RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 FASNP49327 2511 aaKnown RBP0.06□□□□□ -2.4
HMGB1P35-201ENST00000503360 POLR2KP53803 58 aaKnown RBP0.06□□□□□ -2.4
HMGB1P35-201ENST00000503360 CLPSL2Q6UWE3 100 aa0.06□□□□□ -2.4
HMGB1P35-201ENST00000503360 MYO18BQ8IUG5 2567 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 COL6A5A8TX70 2615 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 UTP20O75691 2785 aaKnown RBP0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 NBEAL2Q6ZNJ1 2754 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 TLN2Q9Y4G6 2542 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 SPART-AS1P0CW21 52 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 KRTAP19-5Q3LI72 72 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 KRTAP8-1Q8IUC2 63 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 STAB2Q8WWQ8 2551 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 NBPF19A0A087WUL8 3843 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 TGP01266 2768 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 AKAP9Q99996 3911 aa0.05□□□□□ -2.4
HMGB1P35-201ENST00000503360 NBEAQ8NFP9 2946 aa0.04□□□□□ -2.4
HMGB1P35-201ENST00000503360 DNAH8Q96JB1 4490 aa0.04□□□□□ -2.4
HMGB1P35-201ENST00000503360 SPTBN5Q9NRC6 3674 aaKnown RBP0.03□□□□□ -2.4
HMGB1P35-201ENST00000503360 FAT1Q14517 4588 aa0.03□□□□□ -2.4
HMGB1P35-201ENST00000503360 DNAH10Q8IVF4 4471 aa0.03□□□□□ -2.41
HMGB1P35-201ENST00000503360 CCDC168Q8NDH2 2452 aa0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 USP9YO00507 2555 aaPredicted RBP0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 SNRPGP62308 76 aaKnown RBP0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 USP9XQ93008 2570 aaPredicted RBP0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 COL12A1Q99715 3063 aa0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 HERC1Q15751 4861 aa0□□□□□ -2.41
HMGB1P35-201ENST00000503360 PLECQ15149 4684 aaKnown RBP0□□□□□ -2.41
HMGB1P35-201ENST00000503360 CELSR3Q9NYQ7 3312 aa0□□□□□ -2.41
HMGB1P35-201ENST00000503360 MXRA5Q9NR99 2828 aa-0□□□□□ -2.41
HMGB1P35-201ENST00000503360 HTTP42858 3142 aa-0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 KALRNO60229 2985 aa-0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 SMR3BP02814 79 aaPredicted RBP-0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 MGAM2Q2M2H8 2515 aa-0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 ZFHX4Q86UP3 3567 aa-0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 MUC17Q685J3 4493 aa-0.01□□□□□ -2.41
HMGB1P35-201ENST00000503360 LAMA1P25391 3075 aa-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 MUC12Q9UKN1 5478 aa-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 DEFB1P60022 68 aa-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 RPL39P62891 51 aaKnown RBP-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 KRTAP19-7Q3SYF9 63 aa-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 TOMM7Q9P0U1 55 aa-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 MUC2Q02817 5179 aa-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 DSTQ03001 7570 aaKnown RBP-0.02□□□□□ -2.41
HMGB1P35-201ENST00000503360 RELNP78509 3460 aa-0.03□□□□□ -2.41
HMGB1P35-201ENST00000503360 WDR87Q6ZQQ6 2873 aa-0.04□□□□□ -2.42
HMGB1P35-201ENST00000503360 ITPR1Q14643 2758 aa-0.04□□□□□ -2.42
HMGB1P35-201ENST00000503360 CMYA5Q8N3K9 4069 aa-0.04□□□□□ -2.42
HMGB1P35-201ENST00000503360 KRTAP6-1Q3LI64 71 aa-0.04□□□□□ -2.42
HMGB1P35-201ENST00000503360 DNAH17Q9UFH2 4485 aa-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 CSMD1Q96PZ7 3565 aa-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 DYNC1H1Q14204 4646 aaKnown RBP-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 ITPR3Q14573 2671 aa-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 MT1HP80294 61 aa-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 TRIOO75962 3097 aa-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 KMT2CQ8NEZ4 4911 aaKnown RBP-0.05□□□□□ -2.42
HMGB1P35-201ENST00000503360 PCLOQ9Y6V0 5065 aa-0.06□□□□□ -2.42
HMGB1P35-201ENST00000503360 CRYBG3Q68DQ2 2970 aa-0.06□□□□□ -2.42
HMGB1P35-201ENST00000503360 RPL39LQ96EH5 51 aaKnown RBP-0.06□□□□□ -2.42
HMGB1P35-201ENST00000503360 STARD9Q9P2P6 4700 aa-0.06□□□□□ -2.42
HMGB1P35-201ENST00000503360 TRRAPQ9Y4A5 3859 aa-0.06□□□□□ -2.42
HMGB1P35-201ENST00000503360 SPTAN1Q13813 2472 aaKnown RBP-0.07□□□□□ -2.42
HMGB1P35-201ENST00000503360 CHD7Q9P2D1 2997 aa-0.07□□□□□ -2.42
HMGB1P35-201ENST00000503360 KRTAP19-8Q3LI54 63 aa-0.07□□□□□ -2.42
HMGB1P35-201ENST00000503360 LINC01590Q5TEZ4 76 aa-0.08□□□□□ -2.42
HMGB1P35-201ENST00000503360 LEAP2Q969E1 77 aa-0.08□□□□□ -2.42
HMGB1P35-201ENST00000503360 FRYQ5TBA9 3013 aa-0.08□□□□□ -2.42
HMGB1P35-201ENST00000503360 UBR4Q5T4S7 5183 aa-0.08□□□□□ -2.42
HMGB1P35-201ENST00000503360 HERC2O95714 4834 aa-0.08□□□□□ -2.42
HMGB1P35-201ENST00000503360 C5orf42Q9H799 3197 aa-0.09□□□□□ -2.42
HMGB1P35-201ENST00000503360 LAMA3Q16787 3333 aa-0.09□□□□□ -2.42
HMGB1P35-201ENST00000503360 RYR3Q15413 4870 aa-0.1□□□□□ -2.42
HMGB1P35-201ENST00000503360 MGAQ8IWI9 3026 aa-0.1□□□□□ -2.43
HMGB1P35-201ENST00000503360 DNHD1Q96M86 4753 aa-0.1□□□□□ -2.43
HMGB1P35-201ENST00000503360 NEBP20929 6669 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 DNAH5Q8TE73 4624 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 RYR2Q92736 4967 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 RYR1P21817 5038 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 MT1EP04732 61 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 RNF213Q63HN8 5207 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 USH2AO75445 5202 aa-0.11□□□□□ -2.43
HMGB1P35-201ENST00000503360 DOPEY1Q5JWR5 2465 aa-0.12□□□□□ -2.43
HMGB1P35-201ENST00000503360 EPPK1P58107 5090 aaKnown RBP-0.12□□□□□ -2.43
HMGB1P35-201ENST00000503360 CEP250Q9BV73 2442 aa-0.12□□□□□ -2.43
HMGB1P35-201ENST00000503360 KIAA1109Q2LD37 5005 aa-0.12□□□□□ -2.43
HMGB1P35-201ENST00000503360 DEFB136Q30KP8 78 aa-0.13□□□□□ -2.43
HMGB1P35-201ENST00000503360 LAMA2P24043 3122 aaKnown RBP-0.13□□□□□ -2.43
HMGB1P35-201ENST00000503360 BIRC6Q9NR09 4857 aa-0.13□□□□□ -2.43
HMGB1P35-201ENST00000503360 HYDINQ4G0P3 5121 aa-0.13□□□□□ -2.43
HMGB1P35-201ENST00000503360 SMG1Q96Q15 3661 aaKnown RBP-0.14□□□□□ -2.43
HMGB1P35-201ENST00000503360 TEX15Q9BXT5 2789 aa-0.14□□□□□ -2.43
HMGB1P35-201ENST00000503360 DMXL2Q8TDJ6 3036 aa-0.15□□□□□ -2.43
HMGB1P35-201ENST00000503360 ADGRG4Q8IZF6 3080 aa-0.15□□□□□ -2.43
HMGB1P35-201ENST00000503360 MT1LQ93083 61 aa-0.15□□□□□ -2.43
HMGB1P35-201ENST00000503360 MYO9AB2RTY4 2548 aa-0.16□□□□□ -2.43
HMGB1P35-201ENST00000503360 MT1XP80297 61 aa-0.16□□□□□ -2.44
HMGB1P35-201ENST00000503360 VPS13CQ709C8 3753 aa-0.16□□□□□ -2.44
HMGB1P35-201ENST00000503360 CSMD2Q7Z408 3487 aa-0.17□□□□□ -2.44
HMGB1P35-201ENST00000503360 MT4P47944 62 aa-0.17□□□□□ -2.44
HMGB1P35-201ENST00000503360 ARHGAP5-AS1Q96IT6 56 aa-0.17□□□□□ -2.44
HMGB1P35-201ENST00000503360 RHPN1-AS1Q9BWJ2 59 aa-0.17□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms