RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 Q6ZRX8 168 aa1.57□□□□□ -2.16
CCDC39-207ENST00000495817 VPS13BQ7Z7G8 4022 aa1.56□□□□□ -2.16
CCDC39-207ENST00000495817 FCER1GP30273 86 aa1.56□□□□□ -2.16
CCDC39-207ENST00000495817 FAT3Q8TDW7 4589 aa1.55□□□□□ -2.16
CCDC39-207ENST00000495817 DEFB4AO15263 64 aa1.55□□□□□ -2.16
CCDC39-207ENST00000495817 DEFB135Q30KP9 77 aa1.55□□□□□ -2.16
CCDC39-207ENST00000495817 PIGYQ3MUY2 71 aa1.55□□□□□ -2.16
CCDC39-207ENST00000495817 TOMM5Q8N4H5 51 aa1.55□□□□□ -2.16
CCDC39-207ENST00000495817 CMC2Q9NRP2 79 aa1.55□□□□□ -2.16
CCDC39-207ENST00000495817 LRP1Q07954 4544 aaKnown RBP1.54□□□□□ -2.16
CCDC39-207ENST00000495817 NDUFA4O00483 81 aa1.54□□□□□ -2.16
CCDC39-207ENST00000495817 APELAP0DMC3 54 aa1.54□□□□□ -2.16
CCDC39-207ENST00000495817 COX7BP24311 80 aa1.54□□□□□ -2.16
CCDC39-207ENST00000495817 PLAC4Q8WY50 150 aa1.54□□□□□ -2.16
CCDC39-207ENST00000495817 APLNQ9ULZ1 77 aa1.54□□□□□ -2.16
CCDC39-207ENST00000495817 NCR3O14931 201 aa1.53□□□□□ -2.16
CCDC39-207ENST00000495817 NDUFA3O95167 84 aa1.53□□□□□ -2.16
CCDC39-207ENST00000495817 PRH1P02810 166 aa1.53□□□□□ -2.16
CCDC39-207ENST00000495817 RPL39P5Q59GN2 51 aa1.53□□□□□ -2.16
CCDC39-207ENST00000495817 SSBP3-AS1Q7Z2R9 100 aa1.53□□□□□ -2.16
CCDC39-207ENST00000495817 UBL5Q9BZL1 73 aa1.53□□□□□ -2.16
CCDC39-207ENST00000495817 DMBT1Q9UGM3 2413 aaPredicted RBP1.53□□□□□ -2.16
CCDC39-207ENST00000495817 DEFB114Q30KQ6 69 aa1.52□□□□□ -2.17
CCDC39-207ENST00000495817 DNAH8Q96JB1 4490 aa1.52□□□□□ -2.17
CCDC39-207ENST00000495817 PKHD1L1Q86WI1 4243 aa1.51□□□□□ -2.17
CCDC39-207ENST00000495817 RPL37P61927 97 aaKnown RBP1.51□□□□□ -2.17
CCDC39-207ENST00000495817 LINC00575Q6W349 94 aa1.51□□□□□ -2.17
CCDC39-207ENST00000495817 NMES1Q9C002 83 aa1.51□□□□□ -2.17
CCDC39-207ENST00000495817 LRP2P98164 4655 aa1.5□□□□□ -2.17
CCDC39-207ENST00000495817 TNCP24821 2201 aa1.5□□□□□ -2.17
CCDC39-207ENST00000495817 Q5VSD8 79 aa1.5□□□□□ -2.17
CCDC39-207ENST00000495817 SRRM2Q9UQ35 2752 aaKnown RBP1.5□□□□□ -2.17
CCDC39-207ENST00000495817 TNXBP22105 4242 aa1.5□□□□□ -2.17
CCDC39-207ENST00000495817 DEFB131BA0A096LNP1 70 aa1.48□□□□□ -2.17
CCDC39-207ENST00000495817 H3BUA1 57 aa1.48□□□□□ -2.17
CCDC39-207ENST00000495817 SMR3BP02814 79 aaPredicted RBP1.48□□□□□ -2.17
CCDC39-207ENST00000495817 DEFB1P60022 68 aa1.47□□□□□ -2.17
CCDC39-207ENST00000495817 SPINK13Q1W4C9 94 aa1.47□□□□□ -2.17
CCDC39-207ENST00000495817 USMG5Q96IX5 58 aa1.47□□□□□ -2.17
CCDC39-207ENST00000495817 MUC2Q02817 5179 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 FAT4Q6V0I7 4981 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 HTN3P15516 51 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 DEFB131AP59861 70 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 UBE2DNLQ8IWF7 75 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 KCNQ1DNQ9H478 68 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 LPAP08519 4548 aa1.46□□□□□ -2.18
CCDC39-207ENST00000495817 IGIPA6NJ69 53 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 I3L3M4 83 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 K7EIM0 57 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 WT1-ASQ06250 92 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 KLK9Q2XQG4 91 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 RHPN1-AS1Q9BWJ2 59 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 CRIPTQ9P021 101 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 ABRACLQ9P1F3 81 aa1.45□□□□□ -2.18
CCDC39-207ENST00000495817 PLNP26678 52 aa1.44□□□□□ -2.18
CCDC39-207ENST00000495817 TMEM167AQ8TBQ9 72 aa1.44□□□□□ -2.18
CCDC39-207ENST00000495817 ARHGAP5-AS1Q96IT6 56 aa1.44□□□□□ -2.18
CCDC39-207ENST00000495817 SMIM27A0A1W2PRY6 76 aa1.43□□□□□ -2.18
CCDC39-207ENST00000495817 MT1HL1P0DM35 61 aa1.43□□□□□ -2.18
CCDC39-207ENST00000495817 SNRPGP62308 76 aaKnown RBP1.43□□□□□ -2.18
CCDC39-207ENST00000495817 SPINK9Q5DT21 86 aa1.43□□□□□ -2.18
CCDC39-207ENST00000495817 ETDCA0A1B0GVM5 59 aa1.42□□□□□ -2.18
CCDC39-207ENST00000495817 I3L2K1 104 aa1.42□□□□□ -2.18
CCDC39-207ENST00000495817 SPART-AS1P0CW21 52 aa1.42□□□□□ -2.18
CCDC39-207ENST00000495817 DEFB130BP0DP73 79 aa1.41□□□□□ -2.18
CCDC39-207ENST00000495817 DEFB130AP0DP74 79 aa1.41□□□□□ -2.18
CCDC39-207ENST00000495817 LELP1Q5T871 98 aa1.41□□□□□ -2.18
CCDC39-207ENST00000495817 TIMM8BQ9Y5J9 83 aaPredicted RBP1.41□□□□□ -2.18
CCDC39-207ENST00000495817 A0A096LPF7 62 aa1.39□□□□□ -2.19
CCDC39-207ENST00000495817 A8MTW9 85 aa1.39□□□□□ -2.19
CCDC39-207ENST00000495817 SERF2P84101 59 aa1.39□□□□□ -2.19
CCDC39-207ENST00000495817 WFDC10BQ8IUB3 73 aa1.39□□□□□ -2.19
CCDC39-207ENST00000495817 FSIP2Q5CZC0 6907 aa1.38□□□□□ -2.19
CCDC39-207ENST00000495817 SPINK4O60575 86 aa1.38□□□□□ -2.19
CCDC39-207ENST00000495817 PRCDQ00LT1 54 aa1.38□□□□□ -2.19
CCDC39-207ENST00000495817 DEFB104AQ8WTQ1 72 aa1.38□□□□□ -2.19
CCDC39-207ENST00000495817 NOP10Q9NPE3 64 aaKnown RBP1.38□□□□□ -2.19
CCDC39-207ENST00000495817 LINC01546A6NGU7 62 aa1.37□□□□□ -2.19
CCDC39-207ENST00000495817 K7EQZ3 153 aa1.37□□□□□ -2.19
CCDC39-207ENST00000495817 HTN1P15515 57 aa1.37□□□□□ -2.19
CCDC39-207ENST00000495817 CRIP1P50238 77 aa1.37□□□□□ -2.19
CCDC39-207ENST00000495817 TP53AIP1Q9HCN2 124 aa1.37□□□□□ -2.19
CCDC39-207ENST00000495817 MUC17Q685J3 4493 aa1.36□□□□□ -2.19
CCDC39-207ENST00000495817 MRPL34Q9BQ48 92 aaKnown RBP1.35□□□□□ -2.19
CCDC39-207ENST00000495817 H3BNG1 76 aa1.34□□□□□ -2.19
CCDC39-207ENST00000495817 C10orf95Q9H7T3 257 aa1.34□□□□□ -2.19
CCDC39-207ENST00000495817 CDKN2A-AS1Q9UH64 79 aa1.34□□□□□ -2.19
CCDC39-207ENST00000495817 IAPPP10997 89 aa1.33□□□□□ -2.2
CCDC39-207ENST00000495817 LINC01556Q5JQF7 62 aa1.33□□□□□ -2.2
CCDC39-207ENST00000495817 PRO0255Q9UI72 69 aa1.32□□□□□ -2.2
CCDC39-207ENST00000495817 LINC00158P58513 81 aa1.31□□□□□ -2.2
CCDC39-207ENST00000495817 Q8IZM0 81 aa1.31□□□□□ -2.2
CCDC39-207ENST00000495817 USH2AO75445 5202 aa1.3□□□□□ -2.2
CCDC39-207ENST00000495817 H0YAA0 97 aa1.3□□□□□ -2.2
CCDC39-207ENST00000495817 H0YGX0 51 aa1.3□□□□□ -2.2
CCDC39-207ENST00000495817 COX6A2Q02221 97 aa1.3□□□□□ -2.2
CCDC39-207ENST00000495817 CLPSL2Q6UWE3 100 aa1.29□□□□□ -2.2
CCDC39-207ENST00000495817 CNFNQ9BYD5 112 aa1.29□□□□□ -2.2
CCDC39-207ENST00000495817 SSPOA2VEC9 5147 aa1.27□□□□□ -2.21
CCDC39-207ENST00000495817 LINC00308Q8TCZ7 52 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms