RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 DNAH5Q8TE73 4624 aa3.67□□□□□ -1.82
NPHP3-208ENST00000490993 KMT2AQ03164 3969 aa3.63□□□□□ -1.83
NPHP3-208ENST00000490993 P0C880 135 aa3.63□□□□□ -1.83
NPHP3-208ENST00000490993 CSMD3Q7Z407 3707 aa3.63□□□□□ -1.83
NPHP3-208ENST00000490993 DYNC1H1Q14204 4646 aaKnown RBP3.62□□□□□ -1.83
NPHP3-208ENST00000490993 DNHD1Q96M86 4753 aa3.62□□□□□ -1.83
NPHP3-208ENST00000490993 HECTD4Q9Y4D8 3996 aa3.61□□□□□ -1.83
NPHP3-208ENST00000490993 LRP1BQ9NZR2 4599 aa3.6□□□□□ -1.83
NPHP3-208ENST00000490993 FAT2Q9NYQ8 4349 aa3.59□□□□□ -1.83
NPHP3-208ENST00000490993 SACSQ9NZJ4 4579 aa3.58□□□□□ -1.84
NPHP3-208ENST00000490993 LYSTQ99698 3801 aa3.57□□□□□ -1.84
NPHP3-208ENST00000490993 KRTAP10-6P60371 365 aaPredicted RBP3.57□□□□□ -1.84
NPHP3-208ENST00000490993 KRTAP3-3Q9BYR6 98 aa3.57□□□□□ -1.84
NPHP3-208ENST00000490993 KRTAP4-5Q9BYR2 181 aa3.54□□□□□ -1.84
NPHP3-208ENST00000490993 KRTAP3-2Q9BYR7 98 aa3.52□□□□□ -1.85
NPHP3-208ENST00000490993 PP632Q6XCG6 107 aa3.51□□□□□ -1.85
NPHP3-208ENST00000490993 VPS13BQ7Z7G8 4022 aa3.51□□□□□ -1.85
NPHP3-208ENST00000490993 KRTAP12-2P59991 146 aa3.5□□□□□ -1.85
NPHP3-208ENST00000490993 KRTAP12-1P59990 96 aa3.49□□□□□ -1.85
NPHP3-208ENST00000490993 KRTAP13-4Q3LI77 160 aa3.49□□□□□ -1.85
NPHP3-208ENST00000490993 TNP1P09430 55 aa3.49□□□□□ -1.85
NPHP3-208ENST00000490993 FRAS1Q86XX4 4008 aa3.48□□□□□ -1.85
NPHP3-208ENST00000490993 FAT1Q14517 4588 aa3.47□□□□□ -1.85
NPHP3-208ENST00000490993 APOBP04114 4563 aaKnown RBP3.46□□□□□ -1.86
NPHP3-208ENST00000490993 PKD1P98161 4303 aa3.46□□□□□ -1.86
NPHP3-208ENST00000490993 HYDINQ4G0P3 5121 aa3.45□□□□□ -1.86
NPHP3-208ENST00000490993 RYR2Q92736 4967 aa3.45□□□□□ -1.86
NPHP3-208ENST00000490993 C10orf95Q9H7T3 257 aa3.44□□□□□ -1.86
NPHP3-208ENST00000490993 KRTAP10-10P60014 251 aa3.42□□□□□ -1.86
NPHP3-208ENST00000490993 KRTAP17-1Q9BYP8 105 aa3.38□□□□□ -1.87
NPHP3-208ENST00000490993 RYR1P21817 5038 aa3.38□□□□□ -1.87
NPHP3-208ENST00000490993 PKHD1L1Q86WI1 4243 aa3.35□□□□□ -1.87
NPHP3-208ENST00000490993 FAT3Q8TDW7 4589 aa3.34□□□□□ -1.87
NPHP3-208ENST00000490993 PKHD1P08F94 4074 aa3.33□□□□□ -1.88
NPHP3-208ENST00000490993 KRTAP4-1Q9BYQ7 146 aa3.32□□□□□ -1.88
NPHP3-208ENST00000490993 HSPG2P98160 4391 aa3.32□□□□□ -1.88
NPHP3-208ENST00000490993 PRO2289Q9P1D8 64 aa3.32□□□□□ -1.88
NPHP3-208ENST00000490993 RYR3Q15413 4870 aa3.3□□□□□ -1.88
NPHP3-208ENST00000490993 KRTAP23-1A1A580 65 aa3.28□□□□□ -1.88
NPHP3-208ENST00000490993 KIAA1109Q2LD37 5005 aa3.28□□□□□ -1.88
NPHP3-208ENST00000490993 LRP1Q07954 4544 aaKnown RBP3.26□□□□□ -1.89
NPHP3-208ENST00000490993 LORP23490 312 aaPredicted RBP3.25□□□□□ -1.89
NPHP3-208ENST00000490993 TNXBP22105 4242 aa3.25□□□□□ -1.89
NPHP3-208ENST00000490993 MYCBP2O75592 4640 aa3.22□□□□□ -1.89
NPHP3-208ENST00000490993 KMT2CQ8NEZ4 4911 aaKnown RBP3.21□□□□□ -1.9
NPHP3-208ENST00000490993 MT1HP80294 61 aa3.17□□□□□ -1.9
NPHP3-208ENST00000490993 BIRC6Q9NR09 4857 aa3.15□□□□□ -1.9
NPHP3-208ENST00000490993 SPRR2GQ9BYE4 73 aa3.14□□□□□ -1.91
NPHP3-208ENST00000490993 KRTAP15-1Q3LI76 137 aa3.14□□□□□ -1.91
NPHP3-208ENST00000490993 HERC2O95714 4834 aa3.1□□□□□ -1.91
NPHP3-208ENST00000490993 MT2AP02795 61 aa3.1□□□□□ -1.91
NPHP3-208ENST00000490993 KRTAP19-2Q3LHN2 52 aa3.07□□□□□ -1.92
NPHP3-208ENST00000490993 KRTAP10-12P60413 245 aa3.06□□□□□ -1.92
NPHP3-208ENST00000490993 LRP2P98164 4655 aa3.06□□□□□ -1.92
NPHP3-208ENST00000490993 EPPK1P58107 5090 aaKnown RBP3.06□□□□□ -1.92
NPHP3-208ENST00000490993 MUC17Q685J3 4493 aa3.06□□□□□ -1.92
NPHP3-208ENST00000490993 MT1FP04733 61 aa3.05□□□□□ -1.92
NPHP3-208ENST00000490993 LCE2CQ5TA81 110 aa3.04□□□□□ -1.92
NPHP3-208ENST00000490993 HERC1Q15751 4861 aa3.03□□□□□ -1.92
NPHP3-208ENST00000490993 LPAP08519 4548 aa3.02□□□□□ -1.93
NPHP3-208ENST00000490993 LCE3AQ5TA76 89 aa3.02□□□□□ -1.93
NPHP3-208ENST00000490993 KRTAP19-1Q8IUB9 90 aa3□□□□□ -1.93
NPHP3-208ENST00000490993 KRTAP19-8Q3LI54 63 aa3□□□□□ -1.93
NPHP3-208ENST00000490993 ABCA13Q86UQ4 5058 aa2.99□□□□□ -1.93
NPHP3-208ENST00000490993 KRTAP12-3P60328 96 aa2.98□□□□□ -1.93
NPHP3-208ENST00000490993 INE1O15225 51 aa2.97□□□□□ -1.93
NPHP3-208ENST00000490993 KRTAP9-8Q9BYQ0 159 aa2.96□□□□□ -1.94
NPHP3-208ENST00000490993 FLGP20930 4061 aaPredicted RBP2.92□□□□□ -1.94
NPHP3-208ENST00000490993 KRTAP8-1Q8IUC2 63 aa2.89□□□□□ -1.95
NPHP3-208ENST00000490993 MT1BP07438 61 aa2.88□□□□□ -1.95
NPHP3-208ENST00000490993 PCLOQ9Y6V0 5065 aa2.88□□□□□ -1.95
NPHP3-208ENST00000490993 KRTAP9-3Q9BYQ3 159 aa2.87□□□□□ -1.95
NPHP3-208ENST00000490993 MT1XP80297 61 aa2.86□□□□□ -1.95
NPHP3-208ENST00000490993 KRTAP10-5P60370 271 aa2.85□□□□□ -1.95
NPHP3-208ENST00000490993 HMCN2Q8NDA2 5059 aa2.82□□□□□ -1.96
NPHP3-208ENST00000490993 KRTAP10-7P60409 375 aaPredicted RBP2.82□□□□□ -1.96
NPHP3-208ENST00000490993 KRTAP19-4Q3LI73 84 aa2.81□□□□□ -1.96
NPHP3-208ENST00000490993 KRTAP19-5Q3LI72 72 aa2.77□□□□□ -1.97
NPHP3-208ENST00000490993 RNF213Q63HN8 5207 aa2.75□□□□□ -1.97
NPHP3-208ENST00000490993 SPRR5A0A1B0GTR4 108 aa2.75□□□□□ -1.97
NPHP3-208ENST00000490993 LCE3CQ5T5A8 94 aa2.73□□□□□ -1.97
NPHP3-208ENST00000490993 LCE2BO14633 110 aa2.72□□□□□ -1.97
NPHP3-208ENST00000490993 FAT4Q6V0I7 4981 aa2.71□□□□□ -1.98
NPHP3-208ENST00000490993 LCE2AQ5TA79 106 aaPredicted RBP2.71□□□□□ -1.98
NPHP3-208ENST00000490993 CRCT1Q9UGL9 99 aa2.62□□□□□ -1.99
NPHP3-208ENST00000490993 MUC2Q02817 5179 aa2.61□□□□□ -1.99
NPHP3-208ENST00000490993 KRTAP4-8A0A0G2JLE6 195 aa2.6□□□□□ -1.99
NPHP3-208ENST00000490993 KRTAP4-8Q9BYQ9 185 aa2.6□□□□□ -1.99
NPHP3-208ENST00000490993 UBR4Q5T4S7 5183 aa2.6□□□□□ -1.99
NPHP3-208ENST00000490993 KRTAP19-6Q3LI70 58 aa2.6□□□□□ -1.99
NPHP3-208ENST00000490993 SPRR2FQ96RM1 72 aa2.57□□□□□ -2
NPHP3-208ENST00000490993 LCE2DQ5TA82 110 aaPredicted RBP2.55□□□□□ -2
NPHP3-208ENST00000490993 MT1EP04732 61 aa2.54□□□□□ -2
NPHP3-208ENST00000490993 MT1GP13640 62 aa2.53□□□□□ -2
NPHP3-208ENST00000490993 MT3P25713 68 aa2.53□□□□□ -2.01
NPHP3-208ENST00000490993 MT1LQ93083 61 aa2.53□□□□□ -2.01
NPHP3-208ENST00000490993 KRTAP19-7Q3SYF9 63 aa2.48□□□□□ -2.01
NPHP3-208ENST00000490993 KRTAP19-3Q7Z4W3 81 aa2.48□□□□□ -2.01
NPHP3-208ENST00000490993 SPRR2EP22531 72 aa2.42□□□□□ -2.02
NPHP3-208ENST00000490993 SPRR2BP35325 72 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms