RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 RPL37AP61513 92 aaKnown RBP2□□□□□ -2.09
PTCD3-216ENST00000487043 SPINK6Q6UWN8 80 aa2□□□□□ -2.09
PTCD3-216ENST00000487043 SPRR4Q96PI1 79 aa2□□□□□ -2.09
PTCD3-216ENST00000487043 TRBV7-4A0A0J9YYF1 115 aa1.99□□□□□ -2.09
PTCD3-216ENST00000487043 A0A1B0GW54 56 aa1.99□□□□□ -2.09
PTCD3-216ENST00000487043 F8WEM9 126 aa1.99□□□□□ -2.09
PTCD3-216ENST00000487043 KRTAP10-4P60372 401 aaPredicted RBP1.99□□□□□ -2.09
PTCD3-216ENST00000487043 PRR15Q8IV56 129 aa1.99□□□□□ -2.09
PTCD3-216ENST00000487043 BRK1Q8WUW1 75 aa1.99□□□□□ -2.09
PTCD3-216ENST00000487043 CYSTM1Q9H1C7 97 aa1.99□□□□□ -2.09
PTCD3-216ENST00000487043 EPPK1P58107 5090 aaKnown RBP1.99□□□□□ -2.09
PTCD3-216ENST00000487043 KIAA1109Q2LD37 5005 aa1.98□□□□□ -2.09
PTCD3-216ENST00000487043 PKHD1P08F94 4074 aa1.98□□□□□ -2.09
PTCD3-216ENST00000487043 PMAIP1Q13794 54 aa1.98□□□□□ -2.09
PTCD3-216ENST00000487043 Q6ZQT0 140 aa1.98□□□□□ -2.09
PTCD3-216ENST00000487043 FP248Q71RG6 208 aaPredicted RBP1.98□□□□□ -2.09
PTCD3-216ENST00000487043 RYR1P21817 5038 aa1.97□□□□□ -2.09
PTCD3-216ENST00000487043 NREPQ16612 68 aa1.97□□□□□ -2.09
PTCD3-216ENST00000487043 Q1T7F1 81 aa1.97□□□□□ -2.09
PTCD3-216ENST00000487043 SSBP3-AS1Q7Z2R9 100 aa1.97□□□□□ -2.09
PTCD3-216ENST00000487043 TMEM254Q8TBM7 123 aa1.97□□□□□ -2.09
PTCD3-216ENST00000487043 H3BPC8 53 aa1.96□□□□□ -2.1
PTCD3-216ENST00000487043 NDUFB1O75438 58 aa1.96□□□□□ -2.1
PTCD3-216ENST00000487043 Q5VSD8 79 aa1.96□□□□□ -2.1
PTCD3-216ENST00000487043 C20orf166-AS1Q96NR2 134 aa1.96□□□□□ -2.1
PTCD3-216ENST00000487043 SNURFQ9Y675 71 aa1.96□□□□□ -2.1
PTCD3-216ENST00000487043 A0A0G2JQZ4 141 aa1.95□□□□□ -2.1
PTCD3-216ENST00000487043 HSPG2P98160 4391 aa1.94□□□□□ -2.1
PTCD3-216ENST00000487043 A8MUN3 132 aa1.94□□□□□ -2.1
PTCD3-216ENST00000487043 PP632Q6XCG6 107 aa1.94□□□□□ -2.1
PTCD3-216ENST00000487043 BIRC6Q9NR09 4857 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 A0A087WSZ3 146 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 hDV103S1A0JD37 113 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 SPAG11AQ6PDA7 123 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 LIMD2Q9BT23 127 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 CYP4F30PQ9H0H9 118 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 VPS13BQ7Z7G8 4022 aa1.93□□□□□ -2.1
PTCD3-216ENST00000487043 SPINK1P00995 79 aa1.92□□□□□ -2.1
PTCD3-216ENST00000487043 ASB16-AS1Q495Z4 193 aa1.92□□□□□ -2.1
PTCD3-216ENST00000487043 LINC00472Q9H8W2 130 aa1.92□□□□□ -2.1
PTCD3-216ENST00000487043 HERC2O95714 4834 aa1.91□□□□□ -2.1
PTCD3-216ENST00000487043 RPS29P62273 56 aaKnown RBP1.91□□□□□ -2.1
PTCD3-216ENST00000487043 ATP11AUNQ6ZP68 121 aa1.91□□□□□ -2.1
PTCD3-216ENST00000487043 LRP1Q07954 4544 aaKnown RBP1.91□□□□□ -2.1
PTCD3-216ENST00000487043 TRAV22A0A0B4J277 110 aa1.9□□□□□ -2.11
PTCD3-216ENST00000487043 Q96NJ1 140 aa1.9□□□□□ -2.11
PTCD3-216ENST00000487043 FAT3Q8TDW7 4589 aa1.89□□□□□ -2.11
PTCD3-216ENST00000487043 HCG22E2RYF7 251 aa1.89□□□□□ -2.11
PTCD3-216ENST00000487043 MT1HL1P0DM35 61 aa1.89□□□□□ -2.11
PTCD3-216ENST00000487043 KTN1-AS1Q86SY8 53 aa1.89□□□□□ -2.11
PTCD3-216ENST00000487043 ZCCHC13Q8WW36 166 aaKnown RBP1.89□□□□□ -2.11
PTCD3-216ENST00000487043 FLG2Q5D862 2391 aaPredicted RBP1.88□□□□□ -2.11
PTCD3-216ENST00000487043 CHKB-CPT1BH3BT56 60 aa1.88□□□□□ -2.11
PTCD3-216ENST00000487043 K7EQZ3 153 aa1.88□□□□□ -2.11
PTCD3-216ENST00000487043 PKHD1L1Q86WI1 4243 aa1.88□□□□□ -2.11
PTCD3-216ENST00000487043 ABCA13Q86UQ4 5058 aa1.87□□□□□ -2.11
PTCD3-216ENST00000487043 LINC00208Q96KT6 92 aa1.87□□□□□ -2.11
PTCD3-216ENST00000487043 MYCBP2O75592 4640 aa1.86□□□□□ -2.11
PTCD3-216ENST00000487043 DMBT1Q9UGM3 2413 aaPredicted RBP1.86□□□□□ -2.11
PTCD3-216ENST00000487043 LOC101927531A0A1B0GV80 90 aa1.86□□□□□ -2.11
PTCD3-216ENST00000487043 LCA10Q71F78 164 aa1.86□□□□□ -2.11
PTCD3-216ENST00000487043 CDC42SE1Q9NRR8 79 aa1.86□□□□□ -2.11
PTCD3-216ENST00000487043 MMP24-AS1A0A0U1RRL7 71 aa1.85□□□□□ -2.11
PTCD3-216ENST00000487043 Q5VV11 94 aa1.85□□□□□ -2.11
PTCD3-216ENST00000487043 C7orf65Q6ZTY9 151 aa1.85□□□□□ -2.11
PTCD3-216ENST00000487043 SPTSSBQ8NFR3 76 aa1.85□□□□□ -2.11
PTCD3-216ENST00000487043 RETNLBQ9BQ08 111 aa1.85□□□□□ -2.11
PTCD3-216ENST00000487043 TNXBP22105 4242 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 H0Y9P7 68 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 CASC2Q6XLA1 102 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 WFDC13Q8IUB5 93 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 PRR15LQ9BU68 103 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 TP53AIP1Q9HCN2 124 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 LINC01558Q9Y6Z2 57 aa1.84□□□□□ -2.11
PTCD3-216ENST00000487043 A6NN06 94 aa1.83□□□□□ -2.12
PTCD3-216ENST00000487043 MRPL34Q9BQ48 92 aaKnown RBP1.83□□□□□ -2.12
PTCD3-216ENST00000487043 MUC19Q7Z5P9 8384 aa1.83□□□□□ -2.12
PTCD3-216ENST00000487043 PRO2289Q9P1D8 64 aa1.82□□□□□ -2.12
PTCD3-216ENST00000487043 C9orf92A6NGG3 77 aa1.81□□□□□ -2.12
PTCD3-216ENST00000487043 COA5Q86WW8 74 aa1.81□□□□□ -2.12
PTCD3-216ENST00000487043 TPRXLQ17RH7 258 aa1.8□□□□□ -2.12
PTCD3-216ENST00000487043 PCLOQ9Y6V0 5065 aa1.79□□□□□ -2.12
PTCD3-216ENST00000487043 ACYP2P14621 99 aa1.79□□□□□ -2.12
PTCD3-216ENST00000487043 RPL37P61927 97 aaKnown RBP1.78□□□□□ -2.12
PTCD3-216ENST00000487043 LINC01554Q52M75 96 aa1.78□□□□□ -2.12
PTCD3-216ENST00000487043 HERC1Q15751 4861 aa1.77□□□□□ -2.13
PTCD3-216ENST00000487043 LRP2P98164 4655 aa1.77□□□□□ -2.13
PTCD3-216ENST00000487043 LPAP08519 4548 aa1.76□□□□□ -2.13
PTCD3-216ENST00000487043 KRTAP5-7Q6L8G8 165 aa1.76□□□□□ -2.13
PTCD3-216ENST00000487043 SPATA8Q6RVD6 105 aa1.76□□□□□ -2.13
PTCD3-216ENST00000487043 HMCN2Q8NDA2 5059 aa1.75□□□□□ -2.13
PTCD3-216ENST00000487043 A0A1B0GU69 56 aa1.75□□□□□ -2.13
PTCD3-216ENST00000487043 UQCR11O14957 56 aa1.75□□□□□ -2.13
PTCD3-216ENST00000487043 SPINK7P58062 85 aa1.75□□□□□ -2.13
PTCD3-216ENST00000487043 KRTAP6-3Q3LI67 103 aa1.75□□□□□ -2.13
PTCD3-216ENST00000487043 PCOTHQ58A44 107 aa1.75□□□□□ -2.13
PTCD3-216ENST00000487043 MIR22HGQ0VDD5 57 aa1.73□□□□□ -2.13
PTCD3-216ENST00000487043 DMAC1Q96GE9 116 aa1.71□□□□□ -2.14
PTCD3-216ENST00000487043 MUC17Q685J3 4493 aa1.71□□□□□ -2.14
PTCD3-216ENST00000487043 COX6B2Q6YFQ2 88 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms