RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 KRTAP20-1Q3LI63 56 aa1.1□□□□□ -2.23
VPS41-213ENST00000485955 UBL5Q9BZL1 73 aa1.1□□□□□ -2.23
VPS41-213ENST00000485955 KMT2DO14686 5537 aa1.1□□□□□ -2.23
VPS41-213ENST00000485955 NCBP2-AS2Q69YL0 99 aa1.09□□□□□ -2.23
VPS41-213ENST00000485955 SSBP3-AS1Q7Z2R9 100 aa1.09□□□□□ -2.23
VPS41-213ENST00000485955 FCER1GP30273 86 aa1.08□□□□□ -2.24
VPS41-213ENST00000485955 RPL38P63173 70 aaKnown RBP1.07□□□□□ -2.24
VPS41-213ENST00000485955 TOMM5Q8N4H5 51 aa1.07□□□□□ -2.24
VPS41-213ENST00000485955 K7EMI3 77 aa1.06□□□□□ -2.24
VPS41-213ENST00000485955 PRH1P02810 166 aa1.06□□□□□ -2.24
VPS41-213ENST00000485955 UBE2DNLQ8IWF7 75 aa1.06□□□□□ -2.24
VPS41-213ENST00000485955 CMC2Q9NRP2 79 aa1.06□□□□□ -2.24
VPS41-213ENST00000485955 MUC17Q685J3 4493 aa1.05□□□□□ -2.24
VPS41-213ENST00000485955 DEFB114Q30KQ6 69 aa1.05□□□□□ -2.24
VPS41-213ENST00000485955 NMES1Q9C002 83 aa1.05□□□□□ -2.24
VPS41-213ENST00000485955 KCNQ1DNQ9H478 68 aa1.05□□□□□ -2.24
VPS41-213ENST00000485955 CPSF4LA6NMK7 179 aaKnown RBP1.04□□□□□ -2.24
VPS41-213ENST00000485955 ANGP03950 147 aaKnown RBP1.04□□□□□ -2.24
VPS41-213ENST00000485955 AHNAK2Q8IVF2 5795 aa1.03□□□□□ -2.24
VPS41-213ENST00000485955 M0R1W7 72 aa1.03□□□□□ -2.24
VPS41-213ENST00000485955 ARL14EPLP0DKL9 152 aa1.03□□□□□ -2.24
VPS41-213ENST00000485955 MT1HL1P0DM35 61 aa1.03□□□□□ -2.24
VPS41-213ENST00000485955 PLNP26678 52 aa1.03□□□□□ -2.24
VPS41-213ENST00000485955 SERF2P84101 59 aa1.03□□□□□ -2.24
VPS41-213ENST00000485955 MDN1Q9NU22 5596 aa1.02□□□□□ -2.25
VPS41-213ENST00000485955 ETDCA0A1B0GVM5 59 aa1.02□□□□□ -2.25
VPS41-213ENST00000485955 IGIPA6NJ69 53 aa1.02□□□□□ -2.25
VPS41-213ENST00000485955 FXYD6P3P58550 94 aa1.02□□□□□ -2.25
VPS41-213ENST00000485955 ABRACLQ9P1F3 81 aa1.02□□□□□ -2.25
VPS41-213ENST00000485955 KRTAP10-4P60372 401 aaPredicted RBP1.01□□□□□ -2.25
VPS41-213ENST00000485955 Q5VSD8 79 aa1.01□□□□□ -2.25
VPS41-213ENST00000485955 DEFB131BA0A096LNP1 70 aa1□□□□□ -2.25
VPS41-213ENST00000485955 SMIM27A0A1W2PRY6 76 aa1□□□□□ -2.25
VPS41-213ENST00000485955 I3L2K1 104 aa1□□□□□ -2.25
VPS41-213ENST00000485955 I3L3M4 83 aa1□□□□□ -2.25
VPS41-213ENST00000485955 MRPL33O75394 65 aaKnown RBP1□□□□□ -2.25
VPS41-213ENST00000485955 DEFB110Q30KQ9 67 aa1□□□□□ -2.25
VPS41-213ENST00000485955 TP53AIP1Q9HCN2 124 aa1□□□□□ -2.25
VPS41-213ENST00000485955 KRTAP5-10Q6L8G5 202 aa0.99□□□□□ -2.25
VPS41-213ENST00000485955 FLGP20930 4061 aaPredicted RBP0.98□□□□□ -2.25
VPS41-213ENST00000485955 LYNX1P0DP58 116 aa0.98□□□□□ -2.25
VPS41-213ENST00000485955 PIGYQ3MUY2 71 aa0.98□□□□□ -2.25
VPS41-213ENST00000485955 USMG5Q96IX5 58 aa0.98□□□□□ -2.25
VPS41-213ENST00000485955 CRIPTQ9P021 101 aa0.98□□□□□ -2.25
VPS41-213ENST00000485955 K7EQZ3 153 aa0.97□□□□□ -2.25
VPS41-213ENST00000485955 MRPL34Q9BQ48 92 aaKnown RBP0.97□□□□□ -2.25
VPS41-213ENST00000485955 CNFNQ9BYD5 112 aa0.97□□□□□ -2.25
VPS41-213ENST00000485955 MUC5BQ9HC84 5762 aaPredicted RBP0.96□□□□□ -2.26
VPS41-213ENST00000485955 LINC01546A6NGU7 62 aa0.96□□□□□ -2.26
VPS41-213ENST00000485955 LYNX1G3V0Z9 82 aa0.96□□□□□ -2.26
VPS41-213ENST00000485955 DEFB108BQ8NET1 73 aa0.96□□□□□ -2.26
VPS41-213ENST00000485955 COX14Q96I36 57 aa0.96□□□□□ -2.26
VPS41-213ENST00000485955 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
VPS41-213ENST00000485955 CCL22O00626 93 aa0.95□□□□□ -2.26
VPS41-213ENST00000485955 CRIP1P50238 77 aa0.95□□□□□ -2.26
VPS41-213ENST00000485955 COX6B2Q6YFQ2 88 aa0.95□□□□□ -2.26
VPS41-213ENST00000485955 PRO0255Q9UI72 69 aa0.95□□□□□ -2.26
VPS41-213ENST00000485955 H0YGX0 51 aa0.94□□□□□ -2.26
VPS41-213ENST00000485955 SMR3BP02814 79 aaPredicted RBP0.94□□□□□ -2.26
VPS41-213ENST00000485955 KRTAP2-3P0C7H8 128 aa0.94□□□□□ -2.26
VPS41-213ENST00000485955 KRTAP19-2Q3LHN2 52 aa0.94□□□□□ -2.26
VPS41-213ENST00000485955 KRTAP2-4Q9BYR9 128 aa0.94□□□□□ -2.26
VPS41-213ENST00000485955 C10orf95Q9H7T3 257 aa0.94□□□□□ -2.26
VPS41-213ENST00000485955 TIMM8BQ9Y5J9 83 aaPredicted RBP0.94□□□□□ -2.26
VPS41-213ENST00000485955 SPINK9Q5DT21 86 aa0.93□□□□□ -2.26
VPS41-213ENST00000485955 Q6ZSA8 131 aa0.93□□□□□ -2.26
VPS41-213ENST00000485955 Q8IZM0 81 aa0.93□□□□□ -2.26
VPS41-213ENST00000485955 CDKN2A-AS1Q9UH64 79 aa0.93□□□□□ -2.26
VPS41-213ENST00000485955 AHNAKQ09666 5890 aaKnown RBP0.93□□□□□ -2.26
VPS41-213ENST00000485955 SPINK4O60575 86 aa0.92□□□□□ -2.26
VPS41-213ENST00000485955 LINC00158P58513 81 aa0.92□□□□□ -2.26
VPS41-213ENST00000485955 COX6A2Q02221 97 aa0.92□□□□□ -2.26
VPS41-213ENST00000485955 TMEM167BQ9NRX6 74 aa0.92□□□□□ -2.26
VPS41-213ENST00000485955 H0YAA0 97 aa0.91□□□□□ -2.26
VPS41-213ENST00000485955 NDUFA3O95167 84 aa0.91□□□□□ -2.26
VPS41-213ENST00000485955 A0A0D9SG42 100 aa0.89□□□□□ -2.27
VPS41-213ENST00000485955 MT1HP80294 61 aa0.89□□□□□ -2.27
VPS41-213ENST00000485955 LINC00308Q8TCZ7 52 aa0.89□□□□□ -2.27
VPS41-213ENST00000485955 KRTAP2-1Q9BYU5 128 aa0.89□□□□□ -2.27
VPS41-213ENST00000485955 MINOS1Q5TGZ0 78 aa0.88□□□□□ -2.27
VPS41-213ENST00000485955 SPRR1AP35321 89 aa0.87□□□□□ -2.27
VPS41-213ENST00000485955 SNRPGP62308 76 aaKnown RBP0.87□□□□□ -2.27
VPS41-213ENST00000485955 DEFB105AQ8NG35 78 aa0.87□□□□□ -2.27
VPS41-213ENST00000485955 C6orf48Q9UBA6 75 aa0.87□□□□□ -2.27
VPS41-213ENST00000485955 APLNQ9ULZ1 77 aa0.87□□□□□ -2.27
VPS41-213ENST00000485955 MUC5ACP98088 5654 aa0.87□□□□□ -2.27
VPS41-213ENST00000485955 PRB3Q04118 309 aaPredicted RBP0.86□□□□□ -2.27
VPS41-213ENST00000485955 KRTAP19-6Q3LI70 58 aa0.86□□□□□ -2.27
VPS41-213ENST00000485955 H1FX-AS1Q4G0G2 97 aa0.86□□□□□ -2.27
VPS41-213ENST00000485955 IAPPP10997 89 aa0.85□□□□□ -2.27
VPS41-213ENST00000485955 WFDC13Q8IUB5 93 aa0.85□□□□□ -2.27
VPS41-213ENST00000485955 DEFB106AQ8N104 65 aa0.85□□□□□ -2.27
VPS41-213ENST00000485955 DSTQ03001 7570 aaKnown RBP0.85□□□□□ -2.27
VPS41-213ENST00000485955 H0YGG7 62 aa0.84□□□□□ -2.27
VPS41-213ENST00000485955 SPRR1BP22528 89 aa0.84□□□□□ -2.27
VPS41-213ENST00000485955 SMIM2Q9BVW6 85 aa0.84□□□□□ -2.27
VPS41-213ENST00000485955 NDUFA1O15239 70 aa0.83□□□□□ -2.28
VPS41-213ENST00000485955 RPS27P42677 84 aaKnown RBP0.83□□□□□ -2.28
VPS41-213ENST00000485955 DEFB136Q30KP8 78 aa0.83□□□□□ -2.28
VPS41-213ENST00000485955 RPS27LQ71UM5 84 aaKnown RBP0.83□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms