RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 FRYLO94915 3013 aa-2.05□□□□□ -2.74
VPS50-217ENST00000485140 PPLO60437 1756 aa-2.05□□□□□ -2.74
VPS50-217ENST00000485140 TJP1Q07157 1748 aa-2.05□□□□□ -2.74
VPS50-217ENST00000485140 RPS27P42677 84 aaKnown RBP-2.06□□□□□ -2.74
VPS50-217ENST00000485140 MINOS1Q5TGZ0 78 aa-2.06□□□□□ -2.74
VPS50-217ENST00000485140 RPS27LQ71UM5 84 aaKnown RBP-2.06□□□□□ -2.74
VPS50-217ENST00000485140 KCNQ1DNQ9H478 68 aa-2.06□□□□□ -2.74
VPS50-217ENST00000485140 SMARCA2P51531 1590 aa-2.07□□□□□ -2.74
VPS50-217ENST00000485140 DNAH14Q0VDD8 3507 aa-2.07□□□□□ -2.74
VPS50-217ENST00000485140 RALGAPBQ86X10 1494 aa-2.07□□□□□ -2.74
VPS50-217ENST00000485140 ARHGAP35Q9NRY4 1499 aa-2.07□□□□□ -2.74
VPS50-217ENST00000485140 M0QY20 66 aa-2.08□□□□□ -2.74
VPS50-217ENST00000485140 CRIP1P50238 77 aa-2.08□□□□□ -2.74
VPS50-217ENST00000485140 NRAPQ86VF7 1730 aa-2.08□□□□□ -2.74
VPS50-217ENST00000485140 CFAP47Q6ZTR5 3102 aa-2.1□□□□□ -2.75
VPS50-217ENST00000485140 A8MTW9 85 aa-2.1□□□□□ -2.75
VPS50-217ENST00000485140 SMIM13P0DJ93 91 aa-2.1□□□□□ -2.75
VPS50-217ENST00000485140 RNF17Q9BXT8 1623 aaKnown RBP-2.1□□□□□ -2.75
VPS50-217ENST00000485140 A0A1B0GUL6 1792 aa-2.1□□□□□ -2.75
VPS50-217ENST00000485140 INO80Q9ULG1 1556 aaPredicted RBP-2.11□□□□□ -2.75
VPS50-217ENST00000485140 LRRIQ1Q96JM4 1722 aa-2.11□□□□□ -2.75
VPS50-217ENST00000485140 KDM5DQ9BY66 1539 aa-2.12□□□□□ -2.75
VPS50-217ENST00000485140 TTC37Q6PGP7 1564 aa-2.14□□□□□ -2.75
VPS50-217ENST00000485140 DEFB136Q30KP8 78 aa-2.14□□□□□ -2.75
VPS50-217ENST00000485140 DEFB121Q5J5C9 76 aa-2.14□□□□□ -2.75
VPS50-217ENST00000485140 UACAQ9BZF9 1416 aa-2.15□□□□□ -2.75
VPS50-217ENST00000485140 SFTA3P0C7M3 94 aa-2.15□□□□□ -2.75
VPS50-217ENST00000485140 FCER1GP30273 86 aa-2.15□□□□□ -2.75
VPS50-217ENST00000485140 C6orf48Q9UBA6 75 aa-2.15□□□□□ -2.75
VPS50-217ENST00000485140 DNAH12Q6ZR08 3092 aa-2.16□□□□□ -2.75
VPS50-217ENST00000485140 ERVK-7P63135 1459 aa-2.17□□□□□ -2.76
VPS50-217ENST00000485140 CD163L1Q9NR16 1453 aa-2.17□□□□□ -2.76
VPS50-217ENST00000485140 ETDCA0A1B0GVM5 59 aa-2.17□□□□□ -2.76
VPS50-217ENST00000485140 DNMBPQ6XZF7 1577 aa-2.18□□□□□ -2.76
VPS50-217ENST00000485140 NCBP2-AS2Q69YL0 99 aa-2.18□□□□□ -2.76
VPS50-217ENST00000485140 PCNTO95613 3336 aa-2.19□□□□□ -2.76
VPS50-217ENST00000485140 TDRG1Q3Y452 100 aa-2.19□□□□□ -2.76
VPS50-217ENST00000485140 LEAP2Q969E1 77 aa-2.19□□□□□ -2.76
VPS50-217ENST00000485140 ADIRFQ15847 76 aa-2.2□□□□□ -2.76
VPS50-217ENST00000485140 ST20Q9HBF5 79 aa-2.2□□□□□ -2.76
VPS50-217ENST00000485140 MED14O60244 1454 aa-2.2□□□□□ -2.76
VPS50-217ENST00000485140 ENHOQ6UWT2 76 aa-2.21□□□□□ -2.76
VPS50-217ENST00000485140 NHSQ6T4R5 1651 aa-2.22□□□□□ -2.76
VPS50-217ENST00000485140 EIF2AK4Q9P2K8 1649 aaKnown RBP-2.23□□□□□ -2.77
VPS50-217ENST00000485140 MYO5CQ9NQX4 1742 aa-2.25□□□□□ -2.77
VPS50-217ENST00000485140 ABCC1P33527 1531 aa-2.25□□□□□ -2.77
VPS50-217ENST00000485140 H3BUT2 72 aa-2.25□□□□□ -2.77
VPS50-217ENST00000485140 LMTK2Q8IWU2 1503 aa-2.27□□□□□ -2.77
VPS50-217ENST00000485140 S100A13Q99584 98 aa-2.27□□□□□ -2.77
VPS50-217ENST00000485140 CENPFP49454 3210 aa-2.27□□□□□ -2.77
VPS50-217ENST00000485140 DEFB114Q30KQ6 69 aa-2.29□□□□□ -2.78
VPS50-217ENST00000485140 ABRACLQ9P1F3 81 aa-2.29□□□□□ -2.78
VPS50-217ENST00000485140 KIF21BO75037 1637 aa-2.29□□□□□ -2.78
VPS50-217ENST00000485140 CROCC2H7BZ55 1655 aa-2.29□□□□□ -2.78
VPS50-217ENST00000485140 PREX2Q70Z35 1606 aa-2.3□□□□□ -2.78
VPS50-217ENST00000485140 TTTY10Q9BZA0 68 aa-2.31□□□□□ -2.78
VPS50-217ENST00000485140 ABCC6O95255 1503 aa-2.32□□□□□ -2.78
VPS50-217ENST00000485140 H3BVH4 76 aa-2.32□□□□□ -2.78
VPS50-217ENST00000485140 KRTAP19-2Q3LHN2 52 aa-2.32□□□□□ -2.78
VPS50-217ENST00000485140 BRCA2P51587 3418 aa-2.32□□□□□ -2.78
VPS50-217ENST00000485140 CLASP1Q7Z460 1538 aa-2.32□□□□□ -2.78
VPS50-217ENST00000485140 DCAF1Q9Y4B6 1507 aa-2.32□□□□□ -2.78
VPS50-217ENST00000485140 KAAG1Q9UBP8 84 aa-2.33□□□□□ -2.78
VPS50-217ENST00000485140 MROH1Q8NDA8 1641 aa-2.33□□□□□ -2.78
VPS50-217ENST00000485140 CDH23Q9H251 3354 aa-2.33□□□□□ -2.78
VPS50-217ENST00000485140 ANKARQ7Z5J8 1434 aa-2.34□□□□□ -2.78
VPS50-217ENST00000485140 ASPMQ8IZT6 3477 aa-2.35□□□□□ -2.79
VPS50-217ENST00000485140 FAM208AQ9UK61 1670 aaKnown RBP-2.35□□□□□ -2.79
VPS50-217ENST00000485140 CFAP74Q9C0B2 1584 aa-2.36□□□□□ -2.79
VPS50-217ENST00000485140 C3P01024 1663 aa-2.36□□□□□ -2.79
VPS50-217ENST00000485140 DIP2AQ14689 1571 aa-2.37□□□□□ -2.79
VPS50-217ENST00000485140 C18orf32Q8TCD1 76 aa-2.38□□□□□ -2.79
VPS50-217ENST00000485140 RRBP1Q9P2E9 1410 aaKnown RBP-2.39□□□□□ -2.79
VPS50-217ENST00000485140 SMIM27A0A1W2PRY6 76 aa-2.39□□□□□ -2.79
VPS50-217ENST00000485140 GLI2P10070 1586 aa-2.4□□□□□ -2.79
VPS50-217ENST00000485140 ATXN8Q156A1 80 aa-2.42□□□□□ -2.8
VPS50-217ENST00000485140 POLR2KP53803 58 aaKnown RBP-2.44□□□□□ -2.8
VPS50-217ENST00000485140 WFDC10BQ8IUB3 73 aa-2.45□□□□□ -2.8
VPS50-217ENST00000485140 EEA1Q15075 1411 aa-2.45□□□□□ -2.8
VPS50-217ENST00000485140 TIAM1Q13009 1591 aa-2.45□□□□□ -2.8
VPS50-217ENST00000485140 MADDQ8WXG6 1647 aa-2.46□□□□□ -2.8
VPS50-217ENST00000485140 GNG2P59768 71 aa-2.47□□□□□ -2.8
VPS50-217ENST00000485140 VPS13AQ96RL7 3174 aa-2.47□□□□□ -2.81
VPS50-217ENST00000485140 K7EMI3 77 aa-2.49□□□□□ -2.81
VPS50-217ENST00000485140 TMEM167BQ9NRX6 74 aa-2.49□□□□□ -2.81
VPS50-217ENST00000485140 CCDC18Q5T9S5 1454 aa-2.5□□□□□ -2.81
VPS50-217ENST00000485140 LINC00308Q8TCZ7 52 aa-2.51□□□□□ -2.81
VPS50-217ENST00000485140 ABCA8O94911 1581 aa-2.53□□□□□ -2.81
VPS50-217ENST00000485140 RB1CC1Q8TDY2 1594 aa-2.53□□□□□ -2.81
VPS50-217ENST00000485140 UTRNP46939 3433 aa-2.53□□□□□ -2.81
VPS50-217ENST00000485140 DEFB131AP59861 70 aa-2.53□□□□□ -2.81
VPS50-217ENST00000485140 NMES1Q9C002 83 aa-2.53□□□□□ -2.81
VPS50-217ENST00000485140 GNG13Q9P2W3 67 aa-2.53□□□□□ -2.81
VPS50-217ENST00000485140 HILPDAQ9Y5L2 63 aa-2.57□□□□□ -2.82
VPS50-217ENST00000485140 ALS2Q96Q42 1657 aa-2.57□□□□□ -2.82
VPS50-217ENST00000485140 DEFB104AQ8WTQ1 72 aa-2.58□□□□□ -2.82
VPS50-217ENST00000485140 NRXN3Q9Y4C0 1643 aa-2.6□□□□□ -2.83
VPS50-217ENST00000485140 M0R1W7 72 aa-2.61□□□□□ -2.83
VPS50-217ENST00000485140 SERF2P84101 59 aa-2.61□□□□□ -2.83
VPS50-217ENST00000485140 EFCAB6Q5THR3 1501 aa-2.63□□□□□ -2.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms