RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 K7EIM0 57 aa1.24□□□□□ -2.21
VPS41-212ENST00000482217 UNC79Q9P2D8 2635 aa1.24□□□□□ -2.21
VPS41-212ENST00000482217 TENM2Q9NT68 2774 aa1.24□□□□□ -2.21
VPS41-212ENST00000482217 CENPEQ02224 2701 aa1.24□□□□□ -2.21
VPS41-212ENST00000482217 SPTAN1Q13813 2472 aaKnown RBP1.23□□□□□ -2.21
VPS41-212ENST00000482217 WNK1Q9H4A3 2382 aa1.23□□□□□ -2.21
VPS41-212ENST00000482217 PTPN13Q12923 2485 aa1.23□□□□□ -2.21
VPS41-212ENST00000482217 NAV2Q8IVL1 2488 aa1.23□□□□□ -2.21
VPS41-212ENST00000482217 ITPR3Q14573 2671 aa1.22□□□□□ -2.21
VPS41-212ENST00000482217 SACSQ9NZJ4 4579 aa1.22□□□□□ -2.21
VPS41-212ENST00000482217 FASNP49327 2511 aaKnown RBP1.22□□□□□ -2.21
VPS41-212ENST00000482217 DEFB136Q30KP8 78 aa1.22□□□□□ -2.21
VPS41-212ENST00000482217 ZANQ9Y493 2812 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 FRAS1Q86XX4 4008 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 VPS13BQ7Z7G8 4022 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 CRCT1Q9UGL9 99 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 FLNAP21333 2647 aaKnown RBP1.21□□□□□ -2.22
VPS41-212ENST00000482217 SPG11Q96JI7 2443 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 ITPR2Q14571 2701 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 DNHD1Q96M86 4753 aa1.21□□□□□ -2.22
VPS41-212ENST00000482217 MYCBP2O75592 4640 aa1.2□□□□□ -2.22
VPS41-212ENST00000482217 CREBBPQ92793 2442 aa1.2□□□□□ -2.22
VPS41-212ENST00000482217 RHPN1-AS1Q9BWJ2 59 aa1.2□□□□□ -2.22
VPS41-212ENST00000482217 NOP10Q9NPE3 64 aaKnown RBP1.2□□□□□ -2.22
VPS41-212ENST00000482217 COL6A5A8TX70 2615 aa1.2□□□□□ -2.22
VPS41-212ENST00000482217 MXRA5Q9NR99 2828 aa1.2□□□□□ -2.22
VPS41-212ENST00000482217 CCDC168Q8NDH2 2452 aa1.2□□□□□ -2.22
VPS41-212ENST00000482217 TEX15Q9BXT5 2789 aa1.19□□□□□ -2.22
VPS41-212ENST00000482217 MAP1AP78559 2803 aaPredicted RBP1.19□□□□□ -2.22
VPS41-212ENST00000482217 DEFB1P60022 68 aa1.19□□□□□ -2.22
VPS41-212ENST00000482217 HIVEP1P15822 2718 aa1.19□□□□□ -2.22
VPS41-212ENST00000482217 MYO9AB2RTY4 2548 aa1.19□□□□□ -2.22
VPS41-212ENST00000482217 CMYA5Q8N3K9 4069 aa1.19□□□□□ -2.22
VPS41-212ENST00000482217 SETXQ7Z333 2677 aaKnown RBP1.18□□□□□ -2.22
VPS41-212ENST00000482217 NSD1Q96L73 2696 aaPredicted RBP1.18□□□□□ -2.22
VPS41-212ENST00000482217 KMT2AQ03164 3969 aa1.18□□□□□ -2.22
VPS41-212ENST00000482217 ACANP16112 2415 aa1.17□□□□□ -2.22
VPS41-212ENST00000482217 SONP18583 2426 aaKnown RBP1.17□□□□□ -2.22
VPS41-212ENST00000482217 TRRAPQ9Y4A5 3859 aa1.17□□□□□ -2.22
VPS41-212ENST00000482217 DNAH3Q8TD57 4116 aa1.17□□□□□ -2.22
VPS41-212ENST00000482217 NF1P21359 2839 aa1.16□□□□□ -2.22
VPS41-212ENST00000482217 TNXBP22105 4242 aa1.16□□□□□ -2.22
VPS41-212ENST00000482217 TLN2Q9Y4G6 2542 aa1.16□□□□□ -2.22
VPS41-212ENST00000482217 FLNBO75369 2602 aaKnown RBP1.16□□□□□ -2.22
VPS41-212ENST00000482217 FBN3Q75N90 2809 aa1.16□□□□□ -2.22
VPS41-212ENST00000482217 MTORP42345 2549 aa1.16□□□□□ -2.22
VPS41-212ENST00000482217 DMBT1Q9UGM3 2413 aaPredicted RBP1.15□□□□□ -2.23
VPS41-212ENST00000482217 TENM1Q9UKZ4 2725 aa1.15□□□□□ -2.23
VPS41-212ENST00000482217 HTN1P15515 57 aa1.15□□□□□ -2.23
VPS41-212ENST00000482217 DEFB135Q30KP9 77 aa1.15□□□□□ -2.23
VPS41-212ENST00000482217 HUWE1Q7Z6Z7 4374 aaKnown RBP1.15□□□□□ -2.23
VPS41-212ENST00000482217 SETD2Q9BYW2 2564 aaPredicted RBP1.14□□□□□ -2.23
VPS41-212ENST00000482217 DNAH8Q96JB1 4490 aa1.14□□□□□ -2.23
VPS41-212ENST00000482217 NIPBLQ6KC79 2804 aaeCLIP1.14□□□□□ -2.23
VPS41-212ENST00000482217 MAST4O15021 2626 aa1.14□□□□□ -2.23
VPS41-212ENST00000482217 DEFB4AO15263 64 aa1.14□□□□□ -2.23
VPS41-212ENST00000482217 DNAH9Q9NYC9 4486 aa1.14□□□□□ -2.23
VPS41-212ENST00000482217 TEP1Q99973 2627 aaKnown RBP1.13□□□□□ -2.23
VPS41-212ENST00000482217 DNAH2Q9P225 4427 aa1.13□□□□□ -2.23
VPS41-212ENST00000482217 STARD9Q9P2P6 4700 aa1.12□□□□□ -2.23
VPS41-212ENST00000482217 SPART-AS1P0CW21 52 aa1.12□□□□□ -2.23
VPS41-212ENST00000482217 HTN3P15516 51 aa1.12□□□□□ -2.23
VPS41-212ENST00000482217 KRTAP4-1Q9BYQ7 146 aa1.12□□□□□ -2.23
VPS41-212ENST00000482217 DYNC2H1Q8NCM8 4307 aaKnown RBP1.12□□□□□ -2.23
VPS41-212ENST00000482217 PLECQ15149 4684 aaKnown RBP1.12□□□□□ -2.23
VPS41-212ENST00000482217 DNAH1Q9P2D7 4330 aa1.11□□□□□ -2.23
VPS41-212ENST00000482217 A0A096LPF7 62 aa1.11□□□□□ -2.23
VPS41-212ENST00000482217 STAB1Q9NY15 2570 aa1.1□□□□□ -2.23
VPS41-212ENST00000482217 DNAH7Q8WXX0 4024 aa1.1□□□□□ -2.23
VPS41-212ENST00000482217 HYDINQ4G0P3 5121 aa1.1□□□□□ -2.23
VPS41-212ENST00000482217 PKD1L1Q8TDX9 2849 aa1.1□□□□□ -2.23
VPS41-212ENST00000482217 H3BNG1 76 aa1.1□□□□□ -2.23
VPS41-212ENST00000482217 PKD1P98161 4303 aa1.1□□□□□ -2.23
VPS41-212ENST00000482217 PKHD1L1Q86WI1 4243 aa1.09□□□□□ -2.23
VPS41-212ENST00000482217 HECTD4Q9Y4D8 3996 aa1.09□□□□□ -2.23
VPS41-212ENST00000482217 RYR2Q92736 4967 aa1.09□□□□□ -2.24
VPS41-212ENST00000482217 DNAH10Q8IVF4 4471 aa1.08□□□□□ -2.24
VPS41-212ENST00000482217 M0R2T5 61 aa1.08□□□□□ -2.24
VPS41-212ENST00000482217 KRTAP2-3P0C7H8 128 aa1.08□□□□□ -2.24
VPS41-212ENST00000482217 LINC01556Q5JQF7 62 aa1.08□□□□□ -2.24
VPS41-212ENST00000482217 KRTAP2-4Q9BYR9 128 aa1.08□□□□□ -2.24
VPS41-212ENST00000482217 KRTAP2-1Q9BYU5 128 aa1.08□□□□□ -2.24
VPS41-212ENST00000482217 FCGBPQ9Y6R7 5405 aaPredicted RBP1.08□□□□□ -2.24
VPS41-212ENST00000482217 NBEAL1Q6ZS30 2694 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 TENM3Q9P273 2699 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 COL7A1Q02388 2944 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 NBEAL2Q6ZNJ1 2754 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 MGAM2Q2M2H8 2515 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 RYR3Q15413 4870 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 HSPG2P98160 4391 aa1.07□□□□□ -2.24
VPS41-212ENST00000482217 KMT2CQ8NEZ4 4911 aaKnown RBP1.07□□□□□ -2.24
VPS41-212ENST00000482217 NOTCH1P46531 2555 aa1.06□□□□□ -2.24
VPS41-212ENST00000482217 M0QZ58 72 aa1.06□□□□□ -2.24
VPS41-212ENST00000482217 DNAH17Q9UFH2 4485 aa1.06□□□□□ -2.24
VPS41-212ENST00000482217 DNAH6Q9C0G6 4158 aa1.06□□□□□ -2.24
VPS41-212ENST00000482217 DNAH5Q8TE73 4624 aa1.06□□□□□ -2.24
VPS41-212ENST00000482217 PRM1P04553 51 aa1.04□□□□□ -2.24
VPS41-212ENST00000482217 STAB2Q8WWQ8 2551 aa1.04□□□□□ -2.24
VPS41-212ENST00000482217 EPPK1P58107 5090 aaKnown RBP1.03□□□□□ -2.24
VPS41-212ENST00000482217 SPINK6Q6UWN8 80 aa1.03□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms