RNA–Protein interactions for RNA: ENST00000480614.1

VEGFA-212, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 12,167 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-212ENST00000480614 MT1HL1P0DM35 61 aa4.18□□□□□ -1.74
VEGFA-212ENST00000480614 DNAH2Q9P225 4427 aa4.17□□□□□ -1.74
VEGFA-212ENST00000480614 CRCT1Q9UGL9 99 aa4.15□□□□□ -1.75
VEGFA-212ENST00000480614 KRTAP3-3Q9BYR6 98 aa4.14□□□□□ -1.75
VEGFA-212ENST00000480614 FRAS1Q86XX4 4008 aa4.07□□□□□ -1.76
VEGFA-212ENST00000480614 DNAH6Q9C0G6 4158 aa4.07□□□□□ -1.76
VEGFA-212ENST00000480614 DNAH10Q8IVF4 4471 aa4.07□□□□□ -1.76
VEGFA-212ENST00000480614 CSMD3Q7Z407 3707 aa4.04□□□□□ -1.76
VEGFA-212ENST00000480614 LCE3AQ5TA76 89 aa4.02□□□□□ -1.77
VEGFA-212ENST00000480614 MUC3AQ02505 3323 aa4.01□□□□□ -1.77
VEGFA-212ENST00000480614 KRTAP8-1Q8IUC2 63 aa4.01□□□□□ -1.77
VEGFA-212ENST00000480614 VPS13DQ5THJ4 4388 aa3.99□□□□□ -1.77
VEGFA-212ENST00000480614 KRTAP10-4P60372 401 aaPredicted RBP3.99□□□□□ -1.77
VEGFA-212ENST00000480614 DNAH11Q96DT5 4516 aa3.99□□□□□ -1.77
VEGFA-212ENST00000480614 KRTAP10-5P60370 271 aa3.97□□□□□ -1.77
VEGFA-212ENST00000480614 CUBNO60494 3623 aa3.97□□□□□ -1.77
VEGFA-212ENST00000480614 KMT2AQ03164 3969 aa3.97□□□□□ -1.77
VEGFA-212ENST00000480614 VPS13BQ7Z7G8 4022 aa3.96□□□□□ -1.78
VEGFA-212ENST00000480614 SVEP1Q4LDE5 3571 aa3.95□□□□□ -1.78
VEGFA-212ENST00000480614 PRKDCP78527 4128 aaKnown RBP3.94□□□□□ -1.78
VEGFA-212ENST00000480614 CSMD2Q7Z408 3487 aa3.88□□□□□ -1.79
VEGFA-212ENST00000480614 FLGP20930 4061 aaPredicted RBP3.87□□□□□ -1.79
VEGFA-212ENST00000480614 KRTAP19-4Q3LI73 84 aa3.86□□□□□ -1.79
VEGFA-212ENST00000480614 KRTAP4-5Q9BYR2 181 aa3.86□□□□□ -1.79
VEGFA-212ENST00000480614 DNAH9Q9NYC9 4486 aa3.84□□□□□ -1.79
VEGFA-212ENST00000480614 DNAH17Q9UFH2 4485 aa3.8□□□□□ -1.8
VEGFA-212ENST00000480614 LORP23490 312 aaPredicted RBP3.77□□□□□ -1.81
VEGFA-212ENST00000480614 KRTAP10-7P60409 375 aaPredicted RBP3.77□□□□□ -1.81
VEGFA-212ENST00000480614 LRP1Q07954 4544 aaKnown RBP3.76□□□□□ -1.81
VEGFA-212ENST00000480614 SPRR2GQ9BYE4 73 aa3.74□□□□□ -1.81
VEGFA-212ENST00000480614 DYNC2H1Q8NCM8 4307 aaKnown RBP3.73□□□□□ -1.81
VEGFA-212ENST00000480614 FAT2Q9NYQ8 4349 aa3.73□□□□□ -1.81
VEGFA-212ENST00000480614 DNAH8Q96JB1 4490 aa3.72□□□□□ -1.81
VEGFA-212ENST00000480614 PLECQ15149 4684 aaKnown RBP3.69□□□□□ -1.82
VEGFA-212ENST00000480614 DYNC1H1Q14204 4646 aaKnown RBP3.68□□□□□ -1.82
VEGFA-212ENST00000480614 PKHD1L1Q86WI1 4243 aa3.68□□□□□ -1.82
VEGFA-212ENST00000480614 MT1HP80294 61 aa3.66□□□□□ -1.82
VEGFA-212ENST00000480614 LCE3CQ5T5A8 94 aa3.66□□□□□ -1.82
VEGFA-212ENST00000480614 SPRR2FQ96RM1 72 aa3.65□□□□□ -1.83
VEGFA-212ENST00000480614 KRTAP19-5Q3LI72 72 aa3.64□□□□□ -1.83
VEGFA-212ENST00000480614 MT2AP02795 61 aa3.63□□□□□ -1.83
VEGFA-212ENST00000480614 SACSQ9NZJ4 4579 aa3.63□□□□□ -1.83
VEGFA-212ENST00000480614 PKHD1P08F94 4074 aa3.63□□□□□ -1.83
VEGFA-212ENST00000480614 DNAH5Q8TE73 4624 aa3.57□□□□□ -1.84
VEGFA-212ENST00000480614 KRTAP4-1Q9BYQ7 146 aa3.56□□□□□ -1.84
VEGFA-212ENST00000480614 MT1FP04733 61 aa3.53□□□□□ -1.84
VEGFA-212ENST00000480614 PKD1P98161 4303 aa3.52□□□□□ -1.85
VEGFA-212ENST00000480614 FAT3Q8TDW7 4589 aa3.5□□□□□ -1.85
VEGFA-212ENST00000480614 SPRR5A0A1B0GTR4 108 aa3.47□□□□□ -1.85
VEGFA-212ENST00000480614 APOBP04114 4563 aaKnown RBP3.46□□□□□ -1.86
VEGFA-212ENST00000480614 SPRR2EP22531 72 aa3.43□□□□□ -1.86
VEGFA-212ENST00000480614 SPRR2BP35325 72 aa3.43□□□□□ -1.86
VEGFA-212ENST00000480614 SPRR2AP35326 72 aa3.43□□□□□ -1.86
VEGFA-212ENST00000480614 KRTAP19-8Q3LI54 63 aa3.42□□□□□ -1.86
VEGFA-212ENST00000480614 KRTAP12-4P60329 112 aa3.42□□□□□ -1.86
VEGFA-212ENST00000480614 RYR1P21817 5038 aa3.41□□□□□ -1.86
VEGFA-212ENST00000480614 FAT1Q14517 4588 aa3.41□□□□□ -1.86
VEGFA-212ENST00000480614 HSPG2P98160 4391 aa3.41□□□□□ -1.86
VEGFA-212ENST00000480614 MYCBP2O75592 4640 aa3.4□□□□□ -1.87
VEGFA-212ENST00000480614 LCE3BQ5TA77 95 aa3.39□□□□□ -1.87
VEGFA-212ENST00000480614 STARD9Q9P2P6 4700 aa3.39□□□□□ -1.87
VEGFA-212ENST00000480614 SPRR2DP22532 72 aa3.35□□□□□ -1.87
VEGFA-212ENST00000480614 LCE2BO14633 110 aa3.35□□□□□ -1.87
VEGFA-212ENST00000480614 LRP1BQ9NZR2 4599 aa3.34□□□□□ -1.88
VEGFA-212ENST00000480614 TNXBP22105 4242 aa3.32□□□□□ -1.88
VEGFA-212ENST00000480614 MT1XP80297 61 aa3.31□□□□□ -1.88
VEGFA-212ENST00000480614 MT1GP13640 62 aa3.29□□□□□ -1.88
VEGFA-212ENST00000480614 KRTAP19-1Q8IUB9 90 aa3.28□□□□□ -1.88
VEGFA-212ENST00000480614 RYR3Q15413 4870 aa3.26□□□□□ -1.89
VEGFA-212ENST00000480614 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
VEGFA-212ENST00000480614 LCE3EQ5T5B0 92 aa3.22□□□□□ -1.89
VEGFA-212ENST00000480614 PCLOQ9Y6V0 5065 aa3.2□□□□□ -1.9
VEGFA-212ENST00000480614 DNHD1Q96M86 4753 aa3.17□□□□□ -1.9
VEGFA-212ENST00000480614 MT1BP07438 61 aa3.15□□□□□ -1.9
VEGFA-212ENST00000480614 LCE2CQ5TA81 110 aa3.15□□□□□ -1.91
VEGFA-212ENST00000480614 KRTAP19-3Q7Z4W3 81 aa3.13□□□□□ -1.91
VEGFA-212ENST00000480614 MT1LQ93083 61 aa3.13□□□□□ -1.91
VEGFA-212ENST00000480614 KRTAP9-8Q9BYQ0 159 aa3.11□□□□□ -1.91
VEGFA-212ENST00000480614 KRTAP9-3Q9BYQ3 159 aa3.09□□□□□ -1.91
VEGFA-212ENST00000480614 MT3P25713 68 aa3.07□□□□□ -1.92
VEGFA-212ENST00000480614 LCE2DQ5TA82 110 aaPredicted RBP3.06□□□□□ -1.92
VEGFA-212ENST00000480614 DSTQ03001 7570 aaKnown RBP3.03□□□□□ -1.92
VEGFA-212ENST00000480614 MT1EP04732 61 aa3.01□□□□□ -1.93
VEGFA-212ENST00000480614 HERC2O95714 4834 aa3.01□□□□□ -1.93
VEGFA-212ENST00000480614 KRTAP4-8A0A0G2JLE6 195 aa3.01□□□□□ -1.93
VEGFA-212ENST00000480614 KRTAP4-8Q9BYQ9 185 aa3.01□□□□□ -1.93
VEGFA-212ENST00000480614 RYR2Q92736 4967 aa3.01□□□□□ -1.93
VEGFA-212ENST00000480614 HYDINQ4G0P3 5121 aa2.99□□□□□ -1.93
VEGFA-212ENST00000480614 FSIP2Q5CZC0 6907 aa2.98□□□□□ -1.93
VEGFA-212ENST00000480614 BIRC6Q9NR09 4857 aa2.95□□□□□ -1.94
VEGFA-212ENST00000480614 MT1MQ8N339 61 aa2.94□□□□□ -1.94
VEGFA-212ENST00000480614 MUC17Q685J3 4493 aa2.93□□□□□ -1.94
VEGFA-212ENST00000480614 PRM1P04553 51 aa2.91□□□□□ -1.94
VEGFA-212ENST00000480614 MT4P47944 62 aa2.9□□□□□ -1.95
VEGFA-212ENST00000480614 HERC1Q15751 4861 aa2.89□□□□□ -1.95
VEGFA-212ENST00000480614 KMT2CQ8NEZ4 4911 aaKnown RBP2.88□□□□□ -1.95
VEGFA-212ENST00000480614 LRP2P98164 4655 aa2.87□□□□□ -1.95
VEGFA-212ENST00000480614 LCE1DQ5T752 114 aa2.86□□□□□ -1.95
VEGFA-212ENST00000480614 EPPK1P58107 5090 aaKnown RBP2.85□□□□□ -1.95
VEGFA-212ENST00000480614 KRTAP19-6Q3LI70 58 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms