RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 ST20-AS1Q8NBB2 130 aa3.64□□□□□ -1.83
SF3B1-209ENST00000479532 SPTSSBQ8NFR3 76 aa3.64□□□□□ -1.83
SF3B1-209ENST00000479532 ANAPC11Q9NYG5 84 aa3.64□□□□□ -1.83
SF3B1-209ENST00000479532 SPRR1BP22528 89 aa3.63□□□□□ -1.83
SF3B1-209ENST00000479532 FLG2Q5D862 2391 aaPredicted RBP3.63□□□□□ -1.83
SF3B1-209ENST00000479532 NDUFAF8A1L188 74 aa3.62□□□□□ -1.83
SF3B1-209ENST00000479532 KRTAP10-8P60410 259 aa3.62□□□□□ -1.83
SF3B1-209ENST00000479532 SPAG11AQ6PDA7 123 aa3.62□□□□□ -1.83
SF3B1-209ENST00000479532 SSBP3-AS1Q7Z2R9 100 aa3.62□□□□□ -1.83
SF3B1-209ENST00000479532 OBSCNQ5VST9 7968 aa3.62□□□□□ -1.83
SF3B1-209ENST00000479532 PCLOQ9Y6V0 5065 aa3.62□□□□□ -1.83
SF3B1-209ENST00000479532 MT1HL1P0DM35 61 aa3.61□□□□□ -1.83
SF3B1-209ENST00000479532 KRTAP13-2Q52LG2 175 aa3.61□□□□□ -1.83
SF3B1-209ENST00000479532 Q8N377 158 aa3.61□□□□□ -1.83
SF3B1-209ENST00000479532 LINC00304Q8N9R0 145 aa3.61□□□□□ -1.83
SF3B1-209ENST00000479532 FAT3Q8TDW7 4589 aa3.6□□□□□ -1.83
SF3B1-209ENST00000479532 LINC00313P59037 77 aa3.6□□□□□ -1.83
SF3B1-209ENST00000479532 COA5Q86WW8 74 aa3.59□□□□□ -1.83
SF3B1-209ENST00000479532 KRTAP4-3Q9BYR4 195 aa3.59□□□□□ -1.83
SF3B1-209ENST00000479532 MYCBP2O75592 4640 aa3.59□□□□□ -1.83
SF3B1-209ENST00000479532 SPINK1P00995 79 aa3.58□□□□□ -1.84
SF3B1-209ENST00000479532 DSCR10P59022 87 aa3.58□□□□□ -1.84
SF3B1-209ENST00000479532 LRP1Q07954 4544 aaKnown RBP3.58□□□□□ -1.84
SF3B1-209ENST00000479532 A8MU10 97 aa3.57□□□□□ -1.84
SF3B1-209ENST00000479532 Q8N9L7 120 aa3.57□□□□□ -1.84
SF3B1-209ENST00000479532 RETNLBQ9BQ08 111 aa3.57□□□□□ -1.84
SF3B1-209ENST00000479532 IGLV8-61A0A075B6I0 122 aa3.56□□□□□ -1.84
SF3B1-209ENST00000479532 H0Y9P7 68 aa3.56□□□□□ -1.84
SF3B1-209ENST00000479532 RPS29P62273 56 aaKnown RBP3.56□□□□□ -1.84
SF3B1-209ENST00000479532 TP53AIP1Q9HCN2 124 aa3.56□□□□□ -1.84
SF3B1-209ENST00000479532 DMBT1Q9UGM3 2413 aaPredicted RBP3.55□□□□□ -1.84
SF3B1-209ENST00000479532 TNXBP22105 4242 aa3.55□□□□□ -1.84
SF3B1-209ENST00000479532 A0A1W2PNM2 257 aa3.54□□□□□ -1.84
SF3B1-209ENST00000479532 K7EQZ3 153 aa3.54□□□□□ -1.84
SF3B1-209ENST00000479532 IGFL1Q6UW32 110 aa3.54□□□□□ -1.84
SF3B1-209ENST00000479532 KRTAP16-1A8MUX0 517 aa3.52□□□□□ -1.85
SF3B1-209ENST00000479532 PRR4Q16378 134 aa3.52□□□□□ -1.85
SF3B1-209ENST00000479532 SPATA8Q6RVD6 105 aa3.51□□□□□ -1.85
SF3B1-209ENST00000479532 A0A0G2JQZ4 141 aa3.5□□□□□ -1.85
SF3B1-209ENST00000479532 A8MWP4 228 aa3.49□□□□□ -1.85
SF3B1-209ENST00000479532 A0A087WSZ3 146 aa3.48□□□□□ -1.85
SF3B1-209ENST00000479532 IGHV6-1A0A0B4J1U7 121 aa3.48□□□□□ -1.85
SF3B1-209ENST00000479532 SPINK7P58062 85 aa3.48□□□□□ -1.85
SF3B1-209ENST00000479532 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
SF3B1-209ENST00000479532 HERC1Q15751 4861 aa3.45□□□□□ -1.86
SF3B1-209ENST00000479532 TPRXLQ17RH7 258 aa3.45□□□□□ -1.86
SF3B1-209ENST00000479532 UQCR11O14957 56 aa3.44□□□□□ -1.86
SF3B1-209ENST00000479532 HRES1P13985 223 aa3.43□□□□□ -1.86
SF3B1-209ENST00000479532 ACYP2P14621 99 aa3.43□□□□□ -1.86
SF3B1-209ENST00000479532 KRTAP10-12P60413 245 aa3.43□□□□□ -1.86
SF3B1-209ENST00000479532 ROMO1P60602 79 aa3.42□□□□□ -1.86
SF3B1-209ENST00000479532 WFDC13Q8IUB5 93 aa3.42□□□□□ -1.86
SF3B1-209ENST00000479532 LINC00472Q9H8W2 130 aa3.42□□□□□ -1.86
SF3B1-209ENST00000479532 MMP24-AS1A0A0U1RRL7 71 aa3.41□□□□□ -1.86
SF3B1-209ENST00000479532 KRTAP13-3Q3SY46 172 aa3.41□□□□□ -1.86
SF3B1-209ENST00000479532 C9orf92A6NGG3 77 aa3.4□□□□□ -1.87
SF3B1-209ENST00000479532 MIR22HGQ0VDD5 57 aa3.4□□□□□ -1.87
SF3B1-209ENST00000479532 Q96NJ1 140 aa3.4□□□□□ -1.87
SF3B1-209ENST00000479532 HMCN2Q8NDA2 5059 aa3.4□□□□□ -1.87
SF3B1-209ENST00000479532 A0A1B0GU69 56 aa3.39□□□□□ -1.87
SF3B1-209ENST00000479532 DEFB116Q30KQ4 102 aa3.39□□□□□ -1.87
SF3B1-209ENST00000479532 CSAG1Q6PB30 78 aa3.38□□□□□ -1.87
SF3B1-209ENST00000479532 DMAC1Q96GE9 116 aa3.38□□□□□ -1.87
SF3B1-209ENST00000479532 A0A1B0GVX0 72 aa3.37□□□□□ -1.87
SF3B1-209ENST00000479532 KRTAP25-1Q3LHN0 102 aa3.37□□□□□ -1.87
SF3B1-209ENST00000479532 ADM2Q7Z4H4 148 aa3.36□□□□□ -1.87
SF3B1-209ENST00000479532 LPAP08519 4548 aa3.34□□□□□ -1.88
SF3B1-209ENST00000479532 RPL37P61927 97 aaKnown RBP3.33□□□□□ -1.88
SF3B1-209ENST00000479532 MRPL34Q9BQ48 92 aaKnown RBP3.33□□□□□ -1.88
SF3B1-209ENST00000479532 C8orf17Q9NRJ1 99 aa3.33□□□□□ -1.88
SF3B1-209ENST00000479532 LRP2P98164 4655 aa3.32□□□□□ -1.88
SF3B1-209ENST00000479532 PCOTHQ58A44 107 aa3.32□□□□□ -1.88
SF3B1-209ENST00000479532 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
SF3B1-209ENST00000479532 C20orf166-AS1Q96NR2 134 aa3.31□□□□□ -1.88
SF3B1-209ENST00000479532 A8MUU9 505 aa3.3□□□□□ -1.88
SF3B1-209ENST00000479532 MUC17Q685J3 4493 aa3.27□□□□□ -1.89
SF3B1-209ENST00000479532 UBR4Q5T4S7 5183 aa3.25□□□□□ -1.89
SF3B1-209ENST00000479532 K7ERS5 55 aa3.22□□□□□ -1.89
SF3B1-209ENST00000479532 P0C880 135 aa3.22□□□□□ -1.89
SF3B1-209ENST00000479532 Q5W150 140 aa3.22□□□□□ -1.89
SF3B1-209ENST00000479532 RNF213Q63HN8 5207 aa3.2□□□□□ -1.9
SF3B1-209ENST00000479532 COX6B2Q6YFQ2 88 aa3.19□□□□□ -1.9
SF3B1-209ENST00000479532 KRTAP4-1Q9BYQ7 146 aa3.19□□□□□ -1.9
SF3B1-209ENST00000479532 LCE3AQ5TA76 89 aa3.16□□□□□ -1.9
SF3B1-209ENST00000479532 H0YAA0 97 aa3.14□□□□□ -1.91
SF3B1-209ENST00000479532 MUC2Q02817 5179 aa3.13□□□□□ -1.91
SF3B1-209ENST00000479532 A0A1B0GU33 70 aa3.11□□□□□ -1.91
SF3B1-209ENST00000479532 M0R2T5 61 aa3.1□□□□□ -1.91
SF3B1-209ENST00000479532 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
SF3B1-209ENST00000479532 FAT4Q6V0I7 4981 aa3.09□□□□□ -1.91
SF3B1-209ENST00000479532 LCE3CQ5T5A8 94 aa3.09□□□□□ -1.91
SF3B1-209ENST00000479532 SPINT4Q6UDR6 99 aa3.09□□□□□ -1.91
SF3B1-209ENST00000479532 KRTAP19-2Q3LHN2 52 aa3.08□□□□□ -1.92
SF3B1-209ENST00000479532 LUZP6Q538Z0 58 aa3.07□□□□□ -1.92
SF3B1-209ENST00000479532 MT1HP80294 61 aa3.06□□□□□ -1.92
SF3B1-209ENST00000479532 S4R3F8 94 aa3.01□□□□□ -1.93
SF3B1-209ENST00000479532 FLGP20930 4061 aaPredicted RBP3.01□□□□□ -1.93
SF3B1-209ENST00000479532 CRIPTQ9P021 101 aa3□□□□□ -1.93
SF3B1-209ENST00000479532 CAMK2N1Q7Z7J9 78 aa2.99□□□□□ -1.93
SF3B1-209ENST00000479532 KRTAP5-8O75690 187 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms