RNA–Protein interactions for RNA: ENST00000478451.1

GPNMB-210, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 862 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-210ENST00000478451 VPS13DQ5THJ4 4388 aa2.47□□□□□ -2.01
GPNMB-210ENST00000478451 DNAH7Q8WXX0 4024 aa2.47□□□□□ -2.01
GPNMB-210ENST00000478451 ALMS1Q8TCU4 4167 aa2.46□□□□□ -2.01
GPNMB-210ENST00000478451 PLECQ15149 4684 aaKnown RBP2.46□□□□□ -2.02
GPNMB-210ENST00000478451 DNHD1Q96M86 4753 aa2.46□□□□□ -2.02
GPNMB-210ENST00000478451 DNAH17Q9UFH2 4485 aa2.46□□□□□ -2.02
GPNMB-210ENST00000478451 DNAH6Q9C0G6 4158 aa2.45□□□□□ -2.02
GPNMB-210ENST00000478451 CSMD3Q7Z407 3707 aa2.45□□□□□ -2.02
GPNMB-210ENST00000478451 KRTAP21-3Q3LHN1 58 aa2.45□□□□□ -2.02
GPNMB-210ENST00000478451 C7orf65Q6ZTY9 151 aa2.45□□□□□ -2.02
GPNMB-210ENST00000478451 DMAC1Q96GE9 116 aa2.45□□□□□ -2.02
GPNMB-210ENST00000478451 A0A1B0GU69 56 aa2.44□□□□□ -2.02
GPNMB-210ENST00000478451 A6NN06 94 aa2.44□□□□□ -2.02
GPNMB-210ENST00000478451 LCA10Q71F78 164 aa2.44□□□□□ -2.02
GPNMB-210ENST00000478451 MGAM2Q2M2H8 2515 aa2.44□□□□□ -2.02
GPNMB-210ENST00000478451 PRKDCP78527 4128 aaKnown RBP2.44□□□□□ -2.02
GPNMB-210ENST00000478451 Q5W150 140 aa2.43□□□□□ -2.02
GPNMB-210ENST00000478451 FBN3Q75N90 2809 aa2.43□□□□□ -2.02
GPNMB-210ENST00000478451 MEGF8Q7Z7M0 2845 aa2.42□□□□□ -2.02
GPNMB-210ENST00000478451 DNAH8Q96JB1 4490 aa2.41□□□□□ -2.02
GPNMB-210ENST00000478451 UQCR11O14957 56 aa2.41□□□□□ -2.02
GPNMB-210ENST00000478451 LY6G6CO95867 125 aa2.41□□□□□ -2.02
GPNMB-210ENST00000478451 SPINK1P00995 79 aa2.41□□□□□ -2.02
GPNMB-210ENST00000478451 SPINK7P58062 85 aa2.41□□□□□ -2.02
GPNMB-210ENST00000478451 STARD9Q9P2P6 4700 aa2.41□□□□□ -2.02
GPNMB-210ENST00000478451 RPS29P62273 56 aaKnown RBP2.4□□□□□ -2.03
GPNMB-210ENST00000478451 DNAH2Q9P225 4427 aa2.4□□□□□ -2.03
GPNMB-210ENST00000478451 MIR22HGQ0VDD5 57 aa2.39□□□□□ -2.03
GPNMB-210ENST00000478451 SPATA8Q6RVD6 105 aa2.39□□□□□ -2.03
GPNMB-210ENST00000478451 Q6ZSA8 131 aa2.39□□□□□ -2.03
GPNMB-210ENST00000478451 RBM12B-AS1Q9P1G2 102 aa2.39□□□□□ -2.03
GPNMB-210ENST00000478451 KRTAP13-2Q52LG2 175 aa2.38□□□□□ -2.03
GPNMB-210ENST00000478451 FRAS1Q86XX4 4008 aa2.37□□□□□ -2.03
GPNMB-210ENST00000478451 RETNLBQ9BQ08 111 aa2.36□□□□□ -2.03
GPNMB-210ENST00000478451 TGP01266 2768 aa2.35□□□□□ -2.03
GPNMB-210ENST00000478451 LINC00304Q8N9R0 145 aa2.35□□□□□ -2.03
GPNMB-210ENST00000478451 DNAH5Q8TE73 4624 aa2.35□□□□□ -2.03
GPNMB-210ENST00000478451 PKD1P98161 4303 aa2.34□□□□□ -2.04
GPNMB-210ENST00000478451 DNAH11Q96DT5 4516 aa2.33□□□□□ -2.04
GPNMB-210ENST00000478451 KMT2AQ03164 3969 aa2.32□□□□□ -2.04
GPNMB-210ENST00000478451 A8MUU9 505 aa2.31□□□□□ -2.04
GPNMB-210ENST00000478451 K7ERS5 55 aa2.31□□□□□ -2.04
GPNMB-210ENST00000478451 LINC01554Q52M75 96 aa2.3□□□□□ -2.04
GPNMB-210ENST00000478451 C20orf166-AS1Q96NR2 134 aa2.3□□□□□ -2.04
GPNMB-210ENST00000478451 FAT2Q9NYQ8 4349 aa2.27□□□□□ -2.05
GPNMB-210ENST00000478451 SACSQ9NZJ4 4579 aa2.27□□□□□ -2.05
GPNMB-210ENST00000478451 A0A1B0GU33 70 aa2.27□□□□□ -2.05
GPNMB-210ENST00000478451 H1FX-AS1Q4G0G2 97 aa2.27□□□□□ -2.05
GPNMB-210ENST00000478451 VPS13BQ7Z7G8 4022 aa2.27□□□□□ -2.05
GPNMB-210ENST00000478451 MUC19Q7Z5P9 8384 aa2.27□□□□□ -2.05
GPNMB-210ENST00000478451 LRP1BQ9NZR2 4599 aa2.25□□□□□ -2.05
GPNMB-210ENST00000478451 C9orf92A6NGG3 77 aa2.25□□□□□ -2.05
GPNMB-210ENST00000478451 CSAG1Q6PB30 78 aa2.25□□□□□ -2.05
GPNMB-210ENST00000478451 COX6B2Q6YFQ2 88 aa2.25□□□□□ -2.05
GPNMB-210ENST00000478451 LCE3DQ9BYE3 92 aa2.25□□□□□ -2.05
GPNMB-210ENST00000478451 PKHD1L1Q86WI1 4243 aa2.25□□□□□ -2.05
GPNMB-210ENST00000478451 ADM2Q7Z4H4 148 aa2.24□□□□□ -2.05
GPNMB-210ENST00000478451 APOBP04114 4563 aaKnown RBP2.23□□□□□ -2.05
GPNMB-210ENST00000478451 HYDINQ4G0P3 5121 aa2.23□□□□□ -2.05
GPNMB-210ENST00000478451 H0YAA0 97 aa2.23□□□□□ -2.05
GPNMB-210ENST00000478451 KRTAP25-1Q3LHN0 102 aa2.22□□□□□ -2.05
GPNMB-210ENST00000478451 PKHD1P08F94 4074 aa2.22□□□□□ -2.05
GPNMB-210ENST00000478451 RYR3Q15413 4870 aa2.22□□□□□ -2.05
GPNMB-210ENST00000478451 SMR3BP02814 79 aaPredicted RBP2.21□□□□□ -2.06
GPNMB-210ENST00000478451 RYR2Q92736 4967 aa2.2□□□□□ -2.06
GPNMB-210ENST00000478451 KRTAP10-4P60372 401 aaPredicted RBP2.19□□□□□ -2.06
GPNMB-210ENST00000478451 ROMO1P60602 79 aa2.19□□□□□ -2.06
GPNMB-210ENST00000478451 RPL37P61927 97 aaKnown RBP2.19□□□□□ -2.06
GPNMB-210ENST00000478451 LUZP6Q538Z0 58 aa2.19□□□□□ -2.06
GPNMB-210ENST00000478451 S4R3F8 94 aa2.19□□□□□ -2.06
GPNMB-210ENST00000478451 DYNC1H1Q14204 4646 aaKnown RBP2.19□□□□□ -2.06
GPNMB-210ENST00000478451 PP632Q6XCG6 107 aa2.18□□□□□ -2.06
GPNMB-210ENST00000478451 KMT2CQ8NEZ4 4911 aaKnown RBP2.17□□□□□ -2.06
GPNMB-210ENST00000478451 EPPK1P58107 5090 aaKnown RBP2.17□□□□□ -2.06
GPNMB-210ENST00000478451 FLG2Q5D862 2391 aaPredicted RBP2.15□□□□□ -2.06
GPNMB-210ENST00000478451 TNXBP22105 4242 aa2.15□□□□□ -2.06
GPNMB-210ENST00000478451 BIRC6Q9NR09 4857 aa2.14□□□□□ -2.07
GPNMB-210ENST00000478451 FAT1Q14517 4588 aa2.14□□□□□ -2.07
GPNMB-210ENST00000478451 FAT3Q8TDW7 4589 aa2.14□□□□□ -2.07
GPNMB-210ENST00000478451 HSPG2P98160 4391 aa2.13□□□□□ -2.07
GPNMB-210ENST00000478451 Q5VSD8 79 aa2.13□□□□□ -2.07
GPNMB-210ENST00000478451 CRIPTQ9P021 101 aa2.13□□□□□ -2.07
GPNMB-210ENST00000478451 M0QZ58 72 aa2.12□□□□□ -2.07
GPNMB-210ENST00000478451 A0A0D9SG42 100 aa2.11□□□□□ -2.07
GPNMB-210ENST00000478451 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
GPNMB-210ENST00000478451 SPINT4Q6UDR6 99 aa2.1□□□□□ -2.07
GPNMB-210ENST00000478451 TPRXLQ17RH7 258 aa2.09□□□□□ -2.07
GPNMB-210ENST00000478451 LRP1Q07954 4544 aaKnown RBP2.08□□□□□ -2.08
GPNMB-210ENST00000478451 KRTAP13-4Q3LI77 160 aa2.07□□□□□ -2.08
GPNMB-210ENST00000478451 DMBT1Q9UGM3 2413 aaPredicted RBP2.07□□□□□ -2.08
GPNMB-210ENST00000478451 P0C880 135 aa2.06□□□□□ -2.08
GPNMB-210ENST00000478451 KRTAP10-10P60014 251 aa2.06□□□□□ -2.08
GPNMB-210ENST00000478451 KRTAP12-1P59990 96 aa2.05□□□□□ -2.08
GPNMB-210ENST00000478451 R4GN34 69 aa2.04□□□□□ -2.08
GPNMB-210ENST00000478451 HERC2O95714 4834 aa2.03□□□□□ -2.08
GPNMB-210ENST00000478451 MT1HL1P0DM35 61 aa2.03□□□□□ -2.08
GPNMB-210ENST00000478451 RYR1P21817 5038 aa2.02□□□□□ -2.09
GPNMB-210ENST00000478451 PCLOQ9Y6V0 5065 aa2.01□□□□□ -2.09
GPNMB-210ENST00000478451 KIAA1109Q2LD37 5005 aa2.01□□□□□ -2.09
GPNMB-210ENST00000478451 ABCA13Q86UQ4 5058 aa2□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms