RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	NDUFB1	O75438	58 aa		3.47	□□□□□ -1.85
HDAC9-223	ENST00000476135	NREP	Q16612	68 aa		3.47	□□□□□ -1.85
HDAC9-223	ENST00000476135	CAMK2N1	Q7Z7J9	78 aa		3.47	□□□□□ -1.85
HDAC9-223	ENST00000476135	KRTAP9-6	A8MVA2	160 aa		3.46	□□□□□ -1.86
HDAC9-223	ENST00000476135	DEFB116	Q30KQ4	102 aa		3.46	□□□□□ -1.86
HDAC9-223	ENST00000476135	GPR98	Q8WXG9	6306 aa		3.45	□□□□□ -1.86
HDAC9-223	ENST00000476135		A0A1B0GVX0	72 aa		3.45	□□□□□ -1.86
HDAC9-223	ENST00000476135		A6NN06	94 aa		3.45	□□□□□ -1.86
HDAC9-223	ENST00000476135	DSCR10	P59022	87 aa		3.45	□□□□□ -1.86
HDAC9-223	ENST00000476135	NDUFAF8	A1L188	74 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135		A8MWP4	228 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135	LINC00313	P59037	77 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135	KRTAP10-12	P60413	245 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135	ETDB	Q3ZM63	59 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135	UBL5	Q9BZL1	73 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135	RBM12B-AS1	Q9P1G2	102 aa		3.44	□□□□□ -1.86
HDAC9-223	ENST00000476135	LCE1F	Q5T754	118 aa		3.43	□□□□□ -1.86
HDAC9-223	ENST00000476135		A8MUU9	505 aa		3.42	□□□□□ -1.86
HDAC9-223	ENST00000476135	BPY2	O14599	106 aa		3.42	□□□□□ -1.86
HDAC9-223	ENST00000476135	KRTAP5-4	Q6L8H1	288 aa		3.42	□□□□□ -1.86
HDAC9-223	ENST00000476135	KRTAP4-4	Q9BYR3	166 aa		3.41	□□□□□ -1.86
HDAC9-223	ENST00000476135	C8orf17	Q9NRJ1	99 aa		3.41	□□□□□ -1.86
HDAC9-223	ENST00000476135	IGKV3D-7	A0A0C4DH55	119 aa		3.4	□□□□□ -1.87
HDAC9-223	ENST00000476135		A0A1B0GV90	55 aa		3.4	□□□□□ -1.87
HDAC9-223	ENST00000476135	PRR15	Q8IV56	129 aa		3.4	□□□□□ -1.87
HDAC9-223	ENST00000476135	KRTAP16-1	A8MUX0	517 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135		K7EQZ3	153 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	ACYP1	P07311	99 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	HRES1	P13985	223 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	SPRR2E	P22531	72 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	SPRR2B	P35325	72 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	SPRR2A	P35326	72 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	PMAIP1	Q13794	54 aa		3.39	□□□□□ -1.87
HDAC9-223	ENST00000476135	MP68	P56378	58 aa		3.38	□□□□□ -1.87
HDAC9-223	ENST00000476135	MMP24-AS1	A0A0U1RRL7	71 aa		3.37	□□□□□ -1.87
HDAC9-223	ENST00000476135	TMEM254	Q8TBM7	123 aa		3.37	□□□□□ -1.87
HDAC9-223	ENST00000476135	ANAPC13	Q9BS18	74 aa		3.37	□□□□□ -1.87
HDAC9-223	ENST00000476135	hDV103S1	A0JD37	113 aa		3.36	□□□□□ -1.87
HDAC9-223	ENST00000476135	MRPL34	Q9BQ48	92 aa	Known RBP	3.36	□□□□□ -1.87
HDAC9-223	ENST00000476135		J3QR89	54 aa		3.35	□□□□□ -1.87
HDAC9-223	ENST00000476135	ATP5EP2	Q5VTU8	51 aa		3.35	□□□□□ -1.87
HDAC9-223	ENST00000476135		Q8N9L7	120 aa		3.35	□□□□□ -1.87
HDAC9-223	ENST00000476135	ZCCHC13	Q8WW36	166 aa	Known RBP	3.35	□□□□□ -1.87
HDAC9-223	ENST00000476135	CASC2	Q6XLA1	102 aa		3.34	□□□□□ -1.87
HDAC9-223	ENST00000476135	HCG22	E2RYF7	251 aa		3.33	□□□□□ -1.88
HDAC9-223	ENST00000476135	WFDC13	Q8IUB5	93 aa		3.33	□□□□□ -1.88
HDAC9-223	ENST00000476135	SMIM20	Q8N5G0	67 aa		3.33	□□□□□ -1.88
HDAC9-223	ENST00000476135	SCGB1A1	P11684	91 aa		3.32	□□□□□ -1.88
HDAC9-223	ENST00000476135	SPRR2F	Q96RM1	72 aa		3.32	□□□□□ -1.88
HDAC9-223	ENST00000476135	MT1B	P07438	61 aa		3.3	□□□□□ -1.88
HDAC9-223	ENST00000476135	LINC00643	Q86TS7	51 aa		3.3	□□□□□ -1.88
HDAC9-223	ENST00000476135	SPRR2D	P22532	72 aa		3.29	□□□□□ -1.88
HDAC9-223	ENST00000476135	HIST1H4A	P62805	103 aa	Known RBP	3.29	□□□□□ -1.88
HDAC9-223	ENST00000476135	TP53AIP1	Q9HCN2	124 aa		3.28	□□□□□ -1.88
HDAC9-223	ENST00000476135		K7ERU9	68 aa		3.27	□□□□□ -1.89
HDAC9-223	ENST00000476135	SPINK7	P58062	85 aa		3.27	□□□□□ -1.89
HDAC9-223	ENST00000476135		Q5VV11	94 aa		3.27	□□□□□ -1.89
HDAC9-223	ENST00000476135	C7orf65	Q6ZTY9	151 aa		3.27	□□□□□ -1.89
HDAC9-223	ENST00000476135	LCE3C	Q5T5A8	94 aa		3.25	□□□□□ -1.89
HDAC9-223	ENST00000476135		Q5W150	140 aa		3.24	□□□□□ -1.89
HDAC9-223	ENST00000476135		A0A087WVE0	104 aa		3.23	□□□□□ -1.89
HDAC9-223	ENST00000476135	KRTAP19-8	Q3LI54	63 aa		3.23	□□□□□ -1.89
HDAC9-223	ENST00000476135	LUZP6	Q538Z0	58 aa		3.23	□□□□□ -1.89
HDAC9-223	ENST00000476135	TRAV22	A0A0B4J277	110 aa		3.22	□□□□□ -1.89
HDAC9-223	ENST00000476135	UQCRQ	O14949	82 aa		3.21	□□□□□ -1.9
HDAC9-223	ENST00000476135	ATOX1	O00244	68 aa		3.2	□□□□□ -1.9
HDAC9-223	ENST00000476135	LOC101927531	A0A1B0GV80	90 aa		3.19	□□□□□ -1.9
HDAC9-223	ENST00000476135	IMUP	Q9GZP8	106 aa		3.19	□□□□□ -1.9
HDAC9-223	ENST00000476135		A8MUN3	132 aa		3.18	□□□□□ -1.9
HDAC9-223	ENST00000476135		H0Y9P7	68 aa		3.18	□□□□□ -1.9
HDAC9-223	ENST00000476135		K7ERS5	55 aa		3.17	□□□□□ -1.9
HDAC9-223	ENST00000476135	MT-ATP8	P03928	68 aa		3.16	□□□□□ -1.9
HDAC9-223	ENST00000476135	RPS28	P62857	69 aa	Known RBP	3.16	□□□□□ -1.9
HDAC9-223	ENST00000476135	H1FX-AS1	Q4G0G2	97 aa		3.16	□□□□□ -1.9
HDAC9-223	ENST00000476135	KRTAP8-1	Q8IUC2	63 aa		3.16	□□□□□ -1.9
HDAC9-223	ENST00000476135	SPRR2G	Q9BYE4	73 aa		3.16	□□□□□ -1.9
HDAC9-223	ENST00000476135	CYP4F30P	Q9H0H9	118 aa		3.15	□□□□□ -1.91
HDAC9-223	ENST00000476135	FAM236A	A0A1B0GUQ0	79 aa		3.14	□□□□□ -1.91
HDAC9-223	ENST00000476135	FAM236B	A0A1B0GV22	79 aa		3.14	□□□□□ -1.91
HDAC9-223	ENST00000476135	SPANXA2-OT1	Q8N9U9	137 aa		3.14	□□□□□ -1.91
HDAC9-223	ENST00000476135	C1orf64	Q8NEQ6	169 aa		3.14	□□□□□ -1.91
HDAC9-223	ENST00000476135		H3BPC8	53 aa		3.13	□□□□□ -1.91
HDAC9-223	ENST00000476135	LINC00208	Q96KT6	92 aa		3.13	□□□□□ -1.91
HDAC9-223	ENST00000476135	DST	Q03001	7570 aa	Known RBP	3.12	□□□□□ -1.91
HDAC9-223	ENST00000476135	TRAV7	A0A075B6U4	112 aa		3.1	□□□□□ -1.91
HDAC9-223	ENST00000476135		S4R3F8	94 aa		3.1	□□□□□ -1.91
HDAC9-223	ENST00000476135	ADM2	Q7Z4H4	148 aa		3.07	□□□□□ -1.92
HDAC9-223	ENST00000476135	KLKP1	Q107X0	134 aa		3.06	□□□□□ -1.92
HDAC9-223	ENST00000476135	LCA10	Q71F78	164 aa		3.06	□□□□□ -1.92
HDAC9-223	ENST00000476135	KTN1-AS1	Q86SY8	53 aa		3.06	□□□□□ -1.92
HDAC9-223	ENST00000476135		A6NED7	52 aa		3.05	□□□□□ -1.92
HDAC9-223	ENST00000476135	KRTAP5-10	Q6L8G5	202 aa		3.05	□□□□□ -1.92
HDAC9-223	ENST00000476135	CSAG1	Q6PB30	78 aa		3.05	□□□□□ -1.92
HDAC9-223	ENST00000476135	SERP2	Q8N6R1	65 aa		3.04	□□□□□ -1.92
HDAC9-223	ENST00000476135	OBSCN	Q5VST9	7968 aa		3.04	□□□□□ -1.92
HDAC9-223	ENST00000476135	KRTAP4-3	Q9BYR4	195 aa		3.03	□□□□□ -1.92
HDAC9-223	ENST00000476135	NDUFC1	O43677	76 aa		3.02	□□□□□ -1.93
HDAC9-223	ENST00000476135	KRTAP12-2	P59991	146 aa		3.02	□□□□□ -1.93
HDAC9-223	ENST00000476135	KRTAP5-7	Q6L8G8	165 aa		3.02	□□□□□ -1.93
HDAC9-223	ENST00000476135	DMAC1	Q96GE9	116 aa		3.02	□□□□□ -1.93

Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms