RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MADDQ8WXG6 1647 aa-1.46□□□□□ -2.64
CCDC88A-212ENST00000474059 SRCAPQ6ZRS2 3230 aa-1.46□□□□□ -2.64
CCDC88A-212ENST00000474059 UGGT2Q9NYU1 1516 aa-1.48□□□□□ -2.65
CCDC88A-212ENST00000474059 A0A1B0GUL6 1792 aa-1.49□□□□□ -2.65
CCDC88A-212ENST00000474059 DNAH17Q9UFH2 4485 aa-1.5□□□□□ -2.65
CCDC88A-212ENST00000474059 GNG13Q9P2W3 67 aa-1.5□□□□□ -2.65
CCDC88A-212ENST00000474059 CROCC2H7BZ55 1655 aa-1.51□□□□□ -2.65
CCDC88A-212ENST00000474059 EYSQ5T1H1 3165 aa-1.51□□□□□ -2.65
CCDC88A-212ENST00000474059 MT1EP04732 61 aa-1.51□□□□□ -2.65
CCDC88A-212ENST00000474059 TIAM1Q13009 1591 aa-1.51□□□□□ -2.65
CCDC88A-212ENST00000474059 M0QY20 66 aa-1.52□□□□□ -2.65
CCDC88A-212ENST00000474059 DUOX2Q9NRD8 1548 aa-1.52□□□□□ -2.65
CCDC88A-212ENST00000474059 CEP295Q9C0D2 2601 aa-1.53□□□□□ -2.65
CCDC88A-212ENST00000474059 CHD7Q9P2D1 2997 aa-1.53□□□□□ -2.65
CCDC88A-212ENST00000474059 MYO9AB2RTY4 2548 aa-1.54□□□□□ -2.66
CCDC88A-212ENST00000474059 CFAP46Q8IYW2 2715 aa-1.55□□□□□ -2.66
CCDC88A-212ENST00000474059 SMG1Q96Q15 3661 aaKnown RBP-1.57□□□□□ -2.66
CCDC88A-212ENST00000474059 DNAH10Q8IVF4 4471 aa-1.57□□□□□ -2.66
CCDC88A-212ENST00000474059 M0QZ58 72 aa-1.57□□□□□ -2.66
CCDC88A-212ENST00000474059 GLI2P10070 1586 aa-1.57□□□□□ -2.66
CCDC88A-212ENST00000474059 CSMD1Q96PZ7 3565 aa-1.58□□□□□ -2.66
CCDC88A-212ENST00000474059 LINC01549A6NIU2 74 aa-1.58□□□□□ -2.66
CCDC88A-212ENST00000474059 K7EMI3 77 aa-1.58□□□□□ -2.66
CCDC88A-212ENST00000474059 MT1LQ93083 61 aa-1.58□□□□□ -2.66
CCDC88A-212ENST00000474059 MGAQ8IWI9 3026 aa-1.59□□□□□ -2.66
CCDC88A-212ENST00000474059 KRTAP20-1Q3LI63 56 aa-1.59□□□□□ -2.66
CCDC88A-212ENST00000474059 FAM208AQ9UK61 1670 aaKnown RBP-1.59□□□□□ -2.66
CCDC88A-212ENST00000474059 TRRAPQ9Y4A5 3859 aa-1.6□□□□□ -2.66
CCDC88A-212ENST00000474059 ADGRG4Q8IZF6 3080 aa-1.6□□□□□ -2.67
CCDC88A-212ENST00000474059 A8MTW9 85 aa-1.61□□□□□ -2.67
CCDC88A-212ENST00000474059 MT1GP13640 62 aa-1.61□□□□□ -2.67
CCDC88A-212ENST00000474059 SMCO4Q9NRQ5 59 aa-1.61□□□□□ -2.67
CCDC88A-212ENST00000474059 ALS2Q96Q42 1657 aa-1.61□□□□□ -2.67
CCDC88A-212ENST00000474059 LRBAP50851 2863 aa-1.62□□□□□ -2.67
CCDC88A-212ENST00000474059 MT1BP07438 61 aa-1.62□□□□□ -2.67
CCDC88A-212ENST00000474059 ABRACLQ9P1F3 81 aa-1.62□□□□□ -2.67
CCDC88A-212ENST00000474059 TLN1Q9Y490 2541 aaKnown RBP-1.62□□□□□ -2.67
CCDC88A-212ENST00000474059 SPTAN1Q13813 2472 aaKnown RBP-1.62□□□□□ -2.67
CCDC88A-212ENST00000474059 ABCA6Q8N139 1617 aa-1.62□□□□□ -2.67
CCDC88A-212ENST00000474059 LINC01546A6NGU7 62 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 M0R1W7 72 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 PDCD5O14737 125 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 MT2AP02795 61 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 MT1MQ8N339 61 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 KAAG1Q9UBP8 84 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 DNAH5Q8TE73 4624 aa-1.63□□□□□ -2.67
CCDC88A-212ENST00000474059 PREX2Q70Z35 1606 aa-1.65□□□□□ -2.67
CCDC88A-212ENST00000474059 LINC00308Q8TCZ7 52 aa-1.67□□□□□ -2.68
CCDC88A-212ENST00000474059 TMEM167BQ9NRX6 74 aa-1.67□□□□□ -2.68
CCDC88A-212ENST00000474059 SCRIBQ14160 1630 aa-1.67□□□□□ -2.68
CCDC88A-212ENST00000474059 EEA1Q15075 1411 aa-1.68□□□□□ -2.68
CCDC88A-212ENST00000474059 SPART-AS1P0CW21 52 aa-1.7□□□□□ -2.68
CCDC88A-212ENST00000474059 SERF2P84101 59 aa-1.7□□□□□ -2.68
CCDC88A-212ENST00000474059 DMXL2Q8TDJ6 3036 aa-1.71□□□□□ -2.68
CCDC88A-212ENST00000474059 ITPR2Q14571 2701 aa-1.71□□□□□ -2.68
CCDC88A-212ENST00000474059 SMIM27A0A1W2PRY6 76 aa-1.71□□□□□ -2.68
CCDC88A-212ENST00000474059 EFCAB5A4FU69 1503 aa-1.71□□□□□ -2.68
CCDC88A-212ENST00000474059 CCDC180Q9P1Z9 1646 aa-1.72□□□□□ -2.68
CCDC88A-212ENST00000474059 NMES1Q9C002 83 aa-1.72□□□□□ -2.68
CCDC88A-212ENST00000474059 KIF21BO75037 1637 aa-1.73□□□□□ -2.69
CCDC88A-212ENST00000474059 EFCAB6Q5THR3 1501 aa-1.73□□□□□ -2.69
CCDC88A-212ENST00000474059 IGIPA6NJ69 53 aa-1.74□□□□□ -2.69
CCDC88A-212ENST00000474059 WFDC10BQ8IUB3 73 aa-1.74□□□□□ -2.69
CCDC88A-212ENST00000474059 ATMQ13315 3056 aa-1.77□□□□□ -2.69
CCDC88A-212ENST00000474059 CSMD2Q7Z408 3487 aa-1.79□□□□□ -2.7
CCDC88A-212ENST00000474059 BOD1L1Q8NFC6 3051 aa-1.8□□□□□ -2.7
CCDC88A-212ENST00000474059 DEFB4AO15263 64 aa-1.8□□□□□ -2.7
CCDC88A-212ENST00000474059 KRTAP19-6Q3LI70 58 aa-1.8□□□□□ -2.7
CCDC88A-212ENST00000474059 UGGT1Q9NYU2 1555 aa-1.81□□□□□ -2.7
CCDC88A-212ENST00000474059 LMO7Q8WWI1 1683 aa-1.81□□□□□ -2.7
CCDC88A-212ENST00000474059 ABCA10Q8WWZ4 1543 aa-1.83□□□□□ -2.7
CCDC88A-212ENST00000474059 FREM2Q5SZK8 3169 aa-1.84□□□□□ -2.7
CCDC88A-212ENST00000474059 A0A087WWC5 75 aa-1.85□□□□□ -2.71
CCDC88A-212ENST00000474059 H0YGX0 51 aa-1.85□□□□□ -2.71
CCDC88A-212ENST00000474059 ZFHX4Q86UP3 3567 aa-1.87□□□□□ -2.71
CCDC88A-212ENST00000474059 CPS1P31327 1500 aa-1.87□□□□□ -2.71
CCDC88A-212ENST00000474059 SYCP2Q9BX26 1530 aa-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 PRUNE2Q8WUY3 3088 aa-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 POLR2KP53803 58 aaKnown RBP-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 DEFB131AP59861 70 aa-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 RPS29P62273 56 aaKnown RBP-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 S100ZQ8WXG8 99 aa-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 LEAP2Q969E1 77 aa-1.9□□□□□ -2.71
CCDC88A-212ENST00000474059 MROH2AA6NES4 1674 aa-1.92□□□□□ -2.72
CCDC88A-212ENST00000474059 AGLP35573 1532 aa-1.92□□□□□ -2.72
CCDC88A-212ENST00000474059 MT1FP04733 61 aa-1.94□□□□□ -2.72
CCDC88A-212ENST00000474059 TFF3Q07654 80 aa-1.97□□□□□ -2.72
CCDC88A-212ENST00000474059 MYO15AQ9UKN7 3530 aa-1.97□□□□□ -2.72
CCDC88A-212ENST00000474059 ABCA5Q8WWZ7 1642 aa-1.98□□□□□ -2.73
CCDC88A-212ENST00000474059 PRXQ9BXM0 1461 aa-1.98□□□□□ -2.73
CCDC88A-212ENST00000474059 DEFB136Q30KP8 78 aa-1.98□□□□□ -2.73
CCDC88A-212ENST00000474059 PLNP26678 52 aa-2□□□□□ -2.73
CCDC88A-212ENST00000474059 SMIM5Q71RC9 77 aa-2□□□□□ -2.73
CCDC88A-212ENST00000474059 SPEGQ15772 3267 aa-2.01□□□□□ -2.73
CCDC88A-212ENST00000474059 CRYBG3Q68DQ2 2970 aa-2.01□□□□□ -2.73
CCDC88A-212ENST00000474059 DMDP11532 3685 aa-2.03□□□□□ -2.73
CCDC88A-212ENST00000474059 IQGAP1P46940 1657 aa-2.03□□□□□ -2.73
CCDC88A-212ENST00000474059 DDX60Q8IY21 1712 aaKnown RBP-2.03□□□□□ -2.73
CCDC88A-212ENST00000474059 NRXN3Q9Y4C0 1643 aa-2.06□□□□□ -2.74
CCDC88A-212ENST00000474059 VPS13CQ709C8 3753 aa-2.07□□□□□ -2.74
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms