RNA–Protein interactions for RNA: ENST00000467326.5

VPS50-209, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 574 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-209ENST00000467326 ACACBO00763 2458 aa0.58□□□□□ -2.32
VPS50-209ENST00000467326 NBEAQ8NFP9 2946 aa0.58□□□□□ -2.32
VPS50-209ENST00000467326 CFAP54Q96N23 3096 aa0.57□□□□□ -2.32
VPS50-209ENST00000467326 SPRR2EP22531 72 aa0.57□□□□□ -2.32
VPS50-209ENST00000467326 KRTAP6-2Q3LI66 62 aa0.57□□□□□ -2.32
VPS50-209ENST00000467326 KMT2AQ03164 3969 aa0.57□□□□□ -2.32
VPS50-209ENST00000467326 BSNQ9UPA5 3926 aa0.57□□□□□ -2.32
VPS50-209ENST00000467326 NBEAL2Q6ZNJ1 2754 aa0.57□□□□□ -2.32
VPS50-209ENST00000467326 NBPF19A0A087WUL8 3843 aa0.56□□□□□ -2.32
VPS50-209ENST00000467326 ANKHD1Q8IWZ3 2542 aaKnown RBP0.56□□□□□ -2.32
VPS50-209ENST00000467326 TRIOO75962 3097 aa0.56□□□□□ -2.32
VPS50-209ENST00000467326 SPENQ96T58 3664 aaKnown RBP0.56□□□□□ -2.32
VPS50-209ENST00000467326 ZZEF1O43149 2961 aa0.56□□□□□ -2.32
VPS50-209ENST00000467326 DEFB4AO15263 64 aa0.55□□□□□ -2.32
VPS50-209ENST00000467326 CUBNO60494 3623 aa0.55□□□□□ -2.32
VPS50-209ENST00000467326 VPS13BQ7Z7G8 4022 aa0.55□□□□□ -2.32
VPS50-209ENST00000467326 ITPR1Q14643 2758 aa0.55□□□□□ -2.32
VPS50-209ENST00000467326 MT1EP04732 61 aa0.54□□□□□ -2.32
VPS50-209ENST00000467326 IGSF10Q6WRI0 2623 aa0.53□□□□□ -2.32
VPS50-209ENST00000467326 ZANQ9Y493 2812 aa0.53□□□□□ -2.32
VPS50-209ENST00000467326 DMXL2Q8TDJ6 3036 aa0.53□□□□□ -2.32
VPS50-209ENST00000467326 SYNE1Q8NF91 8797 aaKnown RBP0.53□□□□□ -2.32
VPS50-209ENST00000467326 HIVEP1P15822 2718 aa0.53□□□□□ -2.32
VPS50-209ENST00000467326 MAP1AP78559 2803 aaPredicted RBP0.53□□□□□ -2.32
VPS50-209ENST00000467326 LAMA5O15230 3695 aa0.53□□□□□ -2.33
VPS50-209ENST00000467326 MT1HP80294 61 aa0.52□□□□□ -2.33
VPS50-209ENST00000467326 DYNC2H1Q8NCM8 4307 aaKnown RBP0.52□□□□□ -2.33
VPS50-209ENST00000467326 DNAH8Q96JB1 4490 aa0.52□□□□□ -2.33
VPS50-209ENST00000467326 CFAP46Q8IYW2 2715 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 CSMD1Q96PZ7 3565 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 AKAP9Q99996 3911 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 TGP01266 2768 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 RELNP78509 3460 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 HRNRQ86YZ3 2850 aaPredicted RBP0.51□□□□□ -2.33
VPS50-209ENST00000467326 MT1LQ93083 61 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 SPG11Q96JI7 2443 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 MXRA5Q9NR99 2828 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 PRUNE2Q8WUY3 3088 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 KALRNO60229 2985 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 LRBAP50851 2863 aa0.51□□□□□ -2.33
VPS50-209ENST00000467326 ATMQ13315 3056 aa0.5□□□□□ -2.33
VPS50-209ENST00000467326 ANK3Q12955 4377 aaKnown RBP0.5□□□□□ -2.33
VPS50-209ENST00000467326 DNAH12Q6ZR08 3092 aa0.5□□□□□ -2.33
VPS50-209ENST00000467326 GPR98Q8WXG9 6306 aa0.5□□□□□ -2.33
VPS50-209ENST00000467326 SVEP1Q4LDE5 3571 aa0.5□□□□□ -2.33
VPS50-209ENST00000467326 MGAM2Q2M2H8 2515 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 TLN2Q9Y4G6 2542 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 NBEAL1Q6ZS30 2694 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 LAMA3Q16787 3333 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 COL6A3P12111 3177 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 DNAH3Q8TD57 4116 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 LRP1Q07954 4544 aaKnown RBP0.49□□□□□ -2.33
VPS50-209ENST00000467326 TEX15Q9BXT5 2789 aa0.49□□□□□ -2.33
VPS50-209ENST00000467326 FLNAP21333 2647 aaKnown RBP0.49□□□□□ -2.33
VPS50-209ENST00000467326 TEP1Q99973 2627 aaKnown RBP0.49□□□□□ -2.33
VPS50-209ENST00000467326 USP9XQ93008 2570 aaPredicted RBP0.49□□□□□ -2.33
VPS50-209ENST00000467326 LPAP08519 4548 aa0.48□□□□□ -2.33
VPS50-209ENST00000467326 MDN1Q9NU22 5596 aa0.48□□□□□ -2.33
VPS50-209ENST00000467326 HTTP42858 3142 aa0.48□□□□□ -2.33
VPS50-209ENST00000467326 CEP350Q5VT06 3117 aa0.48□□□□□ -2.33
VPS50-209ENST00000467326 MYO18BQ8IUG5 2567 aa0.48□□□□□ -2.33
VPS50-209ENST00000467326 FASNP49327 2511 aaKnown RBP0.47□□□□□ -2.33
VPS50-209ENST00000467326 ITPR2Q14571 2701 aa0.47□□□□□ -2.33
VPS50-209ENST00000467326 SPRR2GQ9BYE4 73 aa0.47□□□□□ -2.33
VPS50-209ENST00000467326 DNAH2Q9P225 4427 aa0.47□□□□□ -2.33
VPS50-209ENST00000467326 CENPEQ02224 2701 aa0.46□□□□□ -2.34
VPS50-209ENST00000467326 PKD1P98161 4303 aa0.46□□□□□ -2.34
VPS50-209ENST00000467326 C5orf42Q9H799 3197 aa0.46□□□□□ -2.34
VPS50-209ENST00000467326 SMG1Q96Q15 3661 aaKnown RBP0.46□□□□□ -2.34
VPS50-209ENST00000467326 HSPG2P98160 4391 aa0.46□□□□□ -2.34
VPS50-209ENST00000467326 PKHD1L1Q86WI1 4243 aa0.46□□□□□ -2.34
VPS50-209ENST00000467326 LAMA1P25391 3075 aa0.46□□□□□ -2.34
VPS50-209ENST00000467326 SPTBN5Q9NRC6 3674 aaKnown RBP0.45□□□□□ -2.34
VPS50-209ENST00000467326 BOD1L1Q8NFC6 3051 aa0.45□□□□□ -2.34
VPS50-209ENST00000467326 MUC5ACP98088 5654 aa0.45□□□□□ -2.34
VPS50-209ENST00000467326 ADGRG4Q8IZF6 3080 aa0.45□□□□□ -2.34
VPS50-209ENST00000467326 SZT2Q5T011 3432 aa0.45□□□□□ -2.34
VPS50-209ENST00000467326 DNAH10Q8IVF4 4471 aa0.44□□□□□ -2.34
VPS50-209ENST00000467326 MKI67P46013 3256 aaKnown RBP0.44□□□□□ -2.34
VPS50-209ENST00000467326 DOPEY1Q5JWR5 2465 aa0.44□□□□□ -2.34
VPS50-209ENST00000467326 CEP295Q9C0D2 2601 aa0.44□□□□□ -2.34
VPS50-209ENST00000467326 FLGP20930 4061 aaPredicted RBP0.43□□□□□ -2.34
VPS50-209ENST00000467326 HECTD4Q9Y4D8 3996 aa0.43□□□□□ -2.34
VPS50-209ENST00000467326 FREM2Q5SZK8 3169 aa0.43□□□□□ -2.34
VPS50-209ENST00000467326 MT1XP80297 61 aa0.42□□□□□ -2.34
VPS50-209ENST00000467326 MAST4O15021 2626 aa0.42□□□□□ -2.34
VPS50-209ENST00000467326 DCHS1Q96JQ0 3298 aa0.42□□□□□ -2.34
VPS50-209ENST00000467326 DNAH9Q9NYC9 4486 aa0.41□□□□□ -2.34
VPS50-209ENST00000467326 CMYA5Q8N3K9 4069 aa0.41□□□□□ -2.34
VPS50-209ENST00000467326 WDFY4Q6ZS81 3184 aa0.41□□□□□ -2.34
VPS50-209ENST00000467326 CSMD2Q7Z408 3487 aa0.4□□□□□ -2.34
VPS50-209ENST00000467326 DNAH6Q9C0G6 4158 aa0.4□□□□□ -2.35
VPS50-209ENST00000467326 DMDP11532 3685 aa0.4□□□□□ -2.35
VPS50-209ENST00000467326 APOBP04114 4563 aaKnown RBP0.4□□□□□ -2.35
VPS50-209ENST00000467326 DNAH7Q8WXX0 4024 aa0.4□□□□□ -2.35
VPS50-209ENST00000467326 SPTAN1Q13813 2472 aaKnown RBP0.39□□□□□ -2.35
VPS50-209ENST00000467326 FAT3Q8TDW7 4589 aa0.39□□□□□ -2.35
VPS50-209ENST00000467326 XIRP2A4UGR9 3374 aa0.39□□□□□ -2.35
VPS50-209ENST00000467326 SRCAPQ6ZRS2 3230 aa0.39□□□□□ -2.35
VPS50-209ENST00000467326 MUC3AQ02505 3323 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms