RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 SLC51BQ86UW2 128 aa0.56□□□□□ -2.32
USP40-211ENST00000464956 ACYP1P07311 99 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 S100PP25815 95 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 PEA15Q15121 130 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 KRTAP25-1Q3LHN0 102 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 KRTAP19-4Q3LI73 84 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 COX19Q49B96 90 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.55□□□□□ -2.32
USP40-211ENST00000464956 YPEL4Q96NS1 127 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 TTTY13Q9BZ97 58 aa0.55□□□□□ -2.32
USP40-211ENST00000464956 K7EP34 96 aa0.54□□□□□ -2.32
USP40-211ENST00000464956 HSBP1O75506 76 aa0.54□□□□□ -2.32
USP40-211ENST00000464956 LEPROTL1O95214 131 aa0.54□□□□□ -2.32
USP40-211ENST00000464956 CHCHD1Q96BP2 118 aaKnown RBP0.54□□□□□ -2.32
USP40-211ENST00000464956 H0YGX0 51 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 H3BQ85 93 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 DNAL4O96015 105 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 CASC2Q6XLA1 102 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 HIST1H4GQ99525 98 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 KRTAP4-4Q9BYR3 166 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 ORMDL1Q9P0S3 153 aa0.53□□□□□ -2.32
USP40-211ENST00000464956 A0A1B0GX51 115 aa0.52□□□□□ -2.33
USP40-211ENST00000464956 TMEM256-PLSCR3K7ERE1 68 aa0.52□□□□□ -2.33
USP40-211ENST00000464956 C9JAW5 83 aa0.51□□□□□ -2.33
USP40-211ENST00000464956 TNP1P09430 55 aa0.51□□□□□ -2.33
USP40-211ENST00000464956 CYP4F30PQ9H0H9 118 aa0.51□□□□□ -2.33
USP40-211ENST00000464956 FABP4P15090 132 aa0.5□□□□□ -2.33
USP40-211ENST00000464956 NREPQ16612 68 aa0.5□□□□□ -2.33
USP40-211ENST00000464956 PET117Q6UWS5 81 aa0.5□□□□□ -2.33
USP40-211ENST00000464956 A0A1B0GW54 56 aa0.49□□□□□ -2.33
USP40-211ENST00000464956 UBE2V1Q13404 147 aa0.49□□□□□ -2.33
USP40-211ENST00000464956 LCE3CQ5T5A8 94 aa0.49□□□□□ -2.33
USP40-211ENST00000464956 HIGD1BQ9P298 99 aa0.49□□□□□ -2.33
USP40-211ENST00000464956 TRAV22A0A0B4J277 110 aa0.48□□□□□ -2.33
USP40-211ENST00000464956 RGS21Q2M5E4 152 aa0.48□□□□□ -2.33
USP40-211ENST00000464956 TMEM238LA0A1B0GVL6 79 aa0.47□□□□□ -2.33
USP40-211ENST00000464956 A6NJY4 79 aa0.47□□□□□ -2.33
USP40-211ENST00000464956 BPY2O14599 106 aa0.47□□□□□ -2.33
USP40-211ENST00000464956 LINC00310P59036 64 aa0.47□□□□□ -2.33
USP40-211ENST00000464956 KRTDAPP60985 99 aa0.47□□□□□ -2.33
USP40-211ENST00000464956 TP53AIP1Q9HCN2 124 aa0.47□□□□□ -2.33
USP40-211ENST00000464956 LOC101927531A0A1B0GV80 90 aa0.46□□□□□ -2.34
USP40-211ENST00000464956 SYS1-DBNDD2H3BUS1 97 aa0.46□□□□□ -2.34
USP40-211ENST00000464956 Q8N9L7 120 aa0.46□□□□□ -2.34
USP40-211ENST00000464956 KRTAP15-1Q3LI76 137 aa0.45□□□□□ -2.34
USP40-211ENST00000464956 SPINT4Q6UDR6 99 aa0.45□□□□□ -2.34
USP40-211ENST00000464956 SNAPINO95295 136 aa0.44□□□□□ -2.34
USP40-211ENST00000464956 LINC01545Q5VT33 79 aa0.44□□□□□ -2.34
USP40-211ENST00000464956 A0A0B4J2C4 111 aa0.43□□□□□ -2.34
USP40-211ENST00000464956 JMJD7-PLA2G4BH0Y9G9 81 aa0.43□□□□□ -2.34
USP40-211ENST00000464956 TRIAP1O43715 76 aa0.43□□□□□ -2.34
USP40-211ENST00000464956 BAALC-AS2P0C853 105 aa0.43□□□□□ -2.34
USP40-211ENST00000464956 KRTAP13-4Q3LI77 160 aa0.43□□□□□ -2.34
USP40-211ENST00000464956 COX6CP09669 75 aa0.42□□□□□ -2.34
USP40-211ENST00000464956 PSMB2P49721 201 aa0.42□□□□□ -2.34
USP40-211ENST00000464956 TRAV7A0A075B6U4 112 aa0.41□□□□□ -2.34
USP40-211ENST00000464956 ATOH7Q8N100 152 aa0.41□□□□□ -2.34
USP40-211ENST00000464956 C14orf132Q9NPU4 83 aa0.41□□□□□ -2.34
USP40-211ENST00000464956 PRO1854Q9UHT4 67 aa0.41□□□□□ -2.34
USP40-211ENST00000464956 SPTSSBQ8NFR3 76 aa0.39□□□□□ -2.35
USP40-211ENST00000464956 LINC00208Q96KT6 92 aa0.39□□□□□ -2.35
USP40-211ENST00000464956 MUC16Q8WXI7 14507 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 TMEM218A2RU14 115 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 HSBP1L1C9JCN9 74 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 TSTD3H0UI37 97 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 ATOX1O00244 68 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 SNRPEP62304 92 aaKnown RBP0.38□□□□□ -2.35
USP40-211ENST00000464956 HIST3H2BBQ8N257 126 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 HIST1H2BLQ99880 126 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 SPCS1Q9Y6A9 102 aa0.38□□□□□ -2.35
USP40-211ENST00000464956 H0Y9P7 68 aa0.37□□□□□ -2.35
USP40-211ENST00000464956 SCGB1A1P11684 91 aa0.37□□□□□ -2.35
USP40-211ENST00000464956 ACYP2P14621 99 aa0.37□□□□□ -2.35
USP40-211ENST00000464956 KRTAP12-1P59990 96 aa0.37□□□□□ -2.35
USP40-211ENST00000464956 H3BS24 57 aa0.36□□□□□ -2.35
USP40-211ENST00000464956 SCGB1C2P0DMR2 95 aa0.36□□□□□ -2.35
USP40-211ENST00000464956 DMAC1Q96GE9 116 aa0.36□□□□□ -2.35
USP40-211ENST00000464956 ATXN8Q156A1 80 aa0.35□□□□□ -2.35
USP40-211ENST00000464956 SPATA8Q6RVD6 105 aa0.35□□□□□ -2.35
USP40-211ENST00000464956 VAMP8Q9BV40 100 aa0.34□□□□□ -2.36
USP40-211ENST00000464956 CHKB-CPT1BH3BT56 60 aa0.33□□□□□ -2.36
USP40-211ENST00000464956 K7ERJ3 54 aa0.33□□□□□ -2.36
USP40-211ENST00000464956 UQCRQO14949 82 aa0.33□□□□□ -2.36
USP40-211ENST00000464956 APOC3P02656 99 aa0.33□□□□□ -2.36
USP40-211ENST00000464956 UBL5Q9BZL1 73 aa0.33□□□□□ -2.36
USP40-211ENST00000464956 COX8AP10176 69 aa0.32□□□□□ -2.36
USP40-211ENST00000464956 FXYD2P54710 66 aa0.32□□□□□ -2.36
USP40-211ENST00000464956 CLLU1Q5K131 121 aa0.32□□□□□ -2.36
USP40-211ENST00000464956 SPANXA2-OT1Q8N9U9 137 aa0.32□□□□□ -2.36
USP40-211ENST00000464956 hCG_2014768A0A024R1R8 64 aa0.31□□□□□ -2.36
USP40-211ENST00000464956 DLEU1O43261 78 aa0.31□□□□□ -2.36
USP40-211ENST00000464956 NDUFA5Q16718 116 aa0.31□□□□□ -2.36
USP40-211ENST00000464956 SVBPQ8N300 66 aa0.31□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BKO60814 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BJP06899 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BOP23527 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BBP33778 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 MP68P56378 58 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BDP58876 126 aa0.3□□□□□ -2.36
USP40-211ENST00000464956 HIST1H2BCP62807 126 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms