RNA–Protein interactions for RNA: ENST00000460822.1

HPS3-203, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 1,958 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-203ENST00000460822 LINC01556Q5JQF7 62 aa1.3□□□□□ -2.2
HPS3-203ENST00000460822 SPAG11AQ6PDA7 123 aa1.3□□□□□ -2.2
HPS3-203ENST00000460822 LINC00472Q9H8W2 130 aa1.3□□□□□ -2.2
HPS3-203ENST00000460822 ITPR2Q14571 2701 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 PRLHP81277 87 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 TENM4Q6N022 2769 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 USP24Q9UPU5 2620 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 HECTD4Q9Y4D8 3996 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 DNAH7Q8WXX0 4024 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 COL7A1Q02388 2944 aa1.29□□□□□ -2.2
HPS3-203ENST00000460822 ATRQ13535 2644 aa1.28□□□□□ -2.2
HPS3-203ENST00000460822 HUWE1Q7Z6Z7 4374 aaKnown RBP1.28□□□□□ -2.2
HPS3-203ENST00000460822 HELZ2Q9BYK8 2649 aaKnown RBP1.28□□□□□ -2.2
HPS3-203ENST00000460822 SPRR1BP22528 89 aa1.28□□□□□ -2.2
HPS3-203ENST00000460822 KRTAP12-1P59990 96 aa1.28□□□□□ -2.2
HPS3-203ENST00000460822 Q96NJ1 140 aa1.28□□□□□ -2.2
HPS3-203ENST00000460822 TP53AIP1Q9HCN2 124 aa1.28□□□□□ -2.2
HPS3-203ENST00000460822 NSD1Q96L73 2696 aaPredicted RBP1.28□□□□□ -2.21
HPS3-203ENST00000460822 DNAH8Q96JB1 4490 aa1.28□□□□□ -2.21
HPS3-203ENST00000460822 DYNC2H1Q8NCM8 4307 aaKnown RBP1.27□□□□□ -2.21
HPS3-203ENST00000460822 HECTD1Q9ULT8 2610 aa1.27□□□□□ -2.21
HPS3-203ENST00000460822 DEFB131BA0A096LNP1 70 aa1.27□□□□□ -2.21
HPS3-203ENST00000460822 A0A096LNI7 61 aa1.27□□□□□ -2.21
HPS3-203ENST00000460822 KRTAP13-1Q8IUC0 172 aa1.27□□□□□ -2.21
HPS3-203ENST00000460822 FLNBO75369 2602 aaKnown RBP1.26□□□□□ -2.21
HPS3-203ENST00000460822 NBEAL1Q6ZS30 2694 aa1.26□□□□□ -2.21
HPS3-203ENST00000460822 MAST4O15021 2626 aa1.26□□□□□ -2.21
HPS3-203ENST00000460822 PRKDCP78527 4128 aaKnown RBP1.25□□□□□ -2.21
HPS3-203ENST00000460822 VPS13DQ5THJ4 4388 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 MRPL34Q9BQ48 92 aaKnown RBP1.25□□□□□ -2.21
HPS3-203ENST00000460822 PLECQ15149 4684 aaKnown RBP1.25□□□□□ -2.21
HPS3-203ENST00000460822 MEGF8Q7Z7M0 2845 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 DNAH6Q9C0G6 4158 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 K7EIL1 84 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 ACYP2P14621 99 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 KRTAP21-2Q3LI59 83 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 SPATA8Q6RVD6 105 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 DNAH17Q9UFH2 4485 aa1.25□□□□□ -2.21
HPS3-203ENST00000460822 FASNP49327 2511 aaKnown RBP1.24□□□□□ -2.21
HPS3-203ENST00000460822 A0A1B0GU69 56 aa1.24□□□□□ -2.21
HPS3-203ENST00000460822 DMAC1Q96GE9 116 aa1.24□□□□□ -2.21
HPS3-203ENST00000460822 SMR3AQ99954 134 aa1.24□□□□□ -2.21
HPS3-203ENST00000460822 NOTCH1P46531 2555 aa1.24□□□□□ -2.21
HPS3-203ENST00000460822 COL6A5A8TX70 2615 aa1.24□□□□□ -2.21
HPS3-203ENST00000460822 INE1O15225 51 aa1.23□□□□□ -2.21
HPS3-203ENST00000460822 CSAG1Q6PB30 78 aa1.23□□□□□ -2.21
HPS3-203ENST00000460822 UQCR11O14957 56 aa1.23□□□□□ -2.21
HPS3-203ENST00000460822 MACF1Q9UPN3 7388 aaKnown RBP1.22□□□□□ -2.21
HPS3-203ENST00000460822 KMT2AQ03164 3969 aa1.22□□□□□ -2.21
HPS3-203ENST00000460822 DNAH11Q96DT5 4516 aa1.22□□□□□ -2.21
HPS3-203ENST00000460822 KRTAP12-3P60328 96 aa1.22□□□□□ -2.21
HPS3-203ENST00000460822 DNAH2Q9P225 4427 aa1.22□□□□□ -2.21
HPS3-203ENST00000460822 STAB1Q9NY15 2570 aa1.22□□□□□ -2.21
HPS3-203ENST00000460822 STARD9Q9P2P6 4700 aa1.21□□□□□ -2.22
HPS3-203ENST00000460822 STAB2Q8WWQ8 2551 aa1.21□□□□□ -2.22
HPS3-203ENST00000460822 SPINK6Q6UWN8 80 aa1.21□□□□□ -2.22
HPS3-203ENST00000460822 DNAH5Q8TE73 4624 aa1.2□□□□□ -2.22
HPS3-203ENST00000460822 MUC5ACP98088 5654 aa1.2□□□□□ -2.22
HPS3-203ENST00000460822 FBN3Q75N90 2809 aa1.2□□□□□ -2.22
HPS3-203ENST00000460822 TGP01266 2768 aa1.2□□□□□ -2.22
HPS3-203ENST00000460822 NUPR2A6NF83 97 aa1.19□□□□□ -2.22
HPS3-203ENST00000460822 UBE2DNLQ8IWF7 75 aa1.19□□□□□ -2.22
HPS3-203ENST00000460822 VPS13BQ7Z7G8 4022 aa1.18□□□□□ -2.22
HPS3-203ENST00000460822 H0YAA0 97 aa1.18□□□□□ -2.22
HPS3-203ENST00000460822 LY6G6CO95867 125 aa1.18□□□□□ -2.22
HPS3-203ENST00000460822 MGAM2Q2M2H8 2515 aa1.18□□□□□ -2.22
HPS3-203ENST00000460822 J3QKU1 62 aa1.17□□□□□ -2.22
HPS3-203ENST00000460822 Q6ZSA8 131 aa1.17□□□□□ -2.22
HPS3-203ENST00000460822 APLNQ9ULZ1 77 aa1.17□□□□□ -2.22
HPS3-203ENST00000460822 NBDYA0A0U1RRE5 68 aa1.17□□□□□ -2.22
HPS3-203ENST00000460822 FLG2Q5D862 2391 aaPredicted RBP1.16□□□□□ -2.22
HPS3-203ENST00000460822 SPINK1P00995 79 aa1.16□□□□□ -2.22
HPS3-203ENST00000460822 SSBP3-AS1Q7Z2R9 100 aa1.16□□□□□ -2.22
HPS3-203ENST00000460822 PKD1P98161 4303 aa1.16□□□□□ -2.22
HPS3-203ENST00000460822 LRP1BQ9NZR2 4599 aa1.16□□□□□ -2.22
HPS3-203ENST00000460822 A0A087WTM6 91 aa1.16□□□□□ -2.22
HPS3-203ENST00000460822 KRTAP21-3Q3LHN1 58 aa1.16□□□□□ -2.22
HPS3-203ENST00000460822 SACSQ9NZJ4 4579 aa1.15□□□□□ -2.23
HPS3-203ENST00000460822 FAT2Q9NYQ8 4349 aa1.15□□□□□ -2.23
HPS3-203ENST00000460822 PKHD1L1Q86WI1 4243 aa1.15□□□□□ -2.23
HPS3-203ENST00000460822 PKHD1P08F94 4074 aa1.15□□□□□ -2.23
HPS3-203ENST00000460822 H1FX-AS1Q4G0G2 97 aa1.14□□□□□ -2.23
HPS3-203ENST00000460822 CRIPTQ9P021 101 aa1.14□□□□□ -2.23
HPS3-203ENST00000460822 HYDINQ4G0P3 5121 aa1.13□□□□□ -2.23
HPS3-203ENST00000460822 COX6B2Q6YFQ2 88 aa1.12□□□□□ -2.23
HPS3-203ENST00000460822 APOBP04114 4563 aaKnown RBP1.12□□□□□ -2.23
HPS3-203ENST00000460822 KRTAP12-4P60329 112 aa1.12□□□□□ -2.23
HPS3-203ENST00000460822 TNXBP22105 4242 aa1.11□□□□□ -2.23
HPS3-203ENST00000460822 RPL37P61927 97 aaKnown RBP1.1□□□□□ -2.23
HPS3-203ENST00000460822 NEBP20929 6669 aa1.1□□□□□ -2.23
HPS3-203ENST00000460822 C10orf95Q9H7T3 257 aa1.1□□□□□ -2.23
HPS3-203ENST00000460822 HSPG2P98160 4391 aa1.1□□□□□ -2.23
HPS3-203ENST00000460822 DMBT1Q9UGM3 2413 aaPredicted RBP1.09□□□□□ -2.23
HPS3-203ENST00000460822 RPS29P62273 56 aaKnown RBP1.09□□□□□ -2.23
HPS3-203ENST00000460822 LRP1Q07954 4544 aaKnown RBP1.09□□□□□ -2.24
HPS3-203ENST00000460822 DYNC1H1Q14204 4646 aaKnown RBP1.09□□□□□ -2.24
HPS3-203ENST00000460822 SYNE2Q8WXH0 6885 aaKnown RBP1.09□□□□□ -2.24
HPS3-203ENST00000460822 C9orf92A6NGG3 77 aa1.08□□□□□ -2.24
HPS3-203ENST00000460822 FAT3Q8TDW7 4589 aa1.08□□□□□ -2.24
HPS3-203ENST00000460822 A0A0D9SG42 100 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms