RNA–Protein interactions for RNA: ENST00000456367.5

PCDH9-203, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 5,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-203ENST00000456367 FBN3Q75N90 2809 aa2.15□□□□□ -2.06
PCDH9-203ENST00000456367 ANK3Q12955 4377 aaKnown RBP2.15□□□□□ -2.06
PCDH9-203ENST00000456367 KRTAP10-4P60372 401 aaPredicted RBP2.15□□□□□ -2.07
PCDH9-203ENST00000456367 DNAH3Q8TD57 4116 aa2.15□□□□□ -2.07
PCDH9-203ENST00000456367 KRTAP12-3P60328 96 aa2.14□□□□□ -2.07
PCDH9-203ENST00000456367 KRTAP10-12P60413 245 aa2.14□□□□□ -2.07
PCDH9-203ENST00000456367 COL7A1Q02388 2944 aa2.13□□□□□ -2.07
PCDH9-203ENST00000456367 MT1HL1P0DM35 61 aa2.12□□□□□ -2.07
PCDH9-203ENST00000456367 LCE3AQ5TA76 89 aa2.11□□□□□ -2.07
PCDH9-203ENST00000456367 CMYA5Q8N3K9 4069 aa2.11□□□□□ -2.07
PCDH9-203ENST00000456367 OTOGQ6ZRI0 2925 aa2.09□□□□□ -2.07
PCDH9-203ENST00000456367 MT3P25713 68 aa2.07□□□□□ -2.08
PCDH9-203ENST00000456367 DNAH1Q9P2D7 4330 aa2.07□□□□□ -2.08
PCDH9-203ENST00000456367 DNAH6Q9C0G6 4158 aa2.06□□□□□ -2.08
PCDH9-203ENST00000456367 DNAH7Q8WXX0 4024 aa2.06□□□□□ -2.08
PCDH9-203ENST00000456367 SPRR5A0A1B0GTR4 108 aa2.05□□□□□ -2.08
PCDH9-203ENST00000456367 DNAH2Q9P225 4427 aa2.04□□□□□ -2.08
PCDH9-203ENST00000456367 VPS13DQ5THJ4 4388 aa2.03□□□□□ -2.09
PCDH9-203ENST00000456367 DNAH11Q96DT5 4516 aa2.02□□□□□ -2.09
PCDH9-203ENST00000456367 FBN1P35555 2871 aaKnown RBP2.02□□□□□ -2.09
PCDH9-203ENST00000456367 LOC100996750A0A140TA64 210 aa2.02□□□□□ -2.09
PCDH9-203ENST00000456367 KRTAP4-6Q9BYQ5 205 aa2.02□□□□□ -2.09
PCDH9-203ENST00000456367 HUWE1Q7Z6Z7 4374 aaKnown RBP2.01□□□□□ -2.09
PCDH9-203ENST00000456367 KRTAP8-1Q8IUC2 63 aa2.01□□□□□ -2.09
PCDH9-203ENST00000456367 PRKDCP78527 4128 aaKnown RBP2□□□□□ -2.09
PCDH9-203ENST00000456367 SPRR2GQ9BYE4 73 aa1.98□□□□□ -2.09
PCDH9-203ENST00000456367 DNHD1Q96M86 4753 aa1.97□□□□□ -2.09
PCDH9-203ENST00000456367 DNAH10Q8IVF4 4471 aa1.97□□□□□ -2.09
PCDH9-203ENST00000456367 DNAH17Q9UFH2 4485 aa1.95□□□□□ -2.1
PCDH9-203ENST00000456367 KMT2AQ03164 3969 aa1.94□□□□□ -2.1
PCDH9-203ENST00000456367 DYNC2H1Q8NCM8 4307 aaKnown RBP1.93□□□□□ -2.1
PCDH9-203ENST00000456367 LCE3CQ5T5A8 94 aa1.92□□□□□ -2.1
PCDH9-203ENST00000456367 DNAH8Q96JB1 4490 aa1.91□□□□□ -2.1
PCDH9-203ENST00000456367 KRTAP10-5P60370 271 aa1.91□□□□□ -2.1
PCDH9-203ENST00000456367 TNXBP22105 4242 aa1.89□□□□□ -2.11
PCDH9-203ENST00000456367 FRAS1Q86XX4 4008 aa1.89□□□□□ -2.11
PCDH9-203ENST00000456367 DNAH9Q9NYC9 4486 aa1.88□□□□□ -2.11
PCDH9-203ENST00000456367 PKHD1P08F94 4074 aa1.87□□□□□ -2.11
PCDH9-203ENST00000456367 DNAH5Q8TE73 4624 aa1.87□□□□□ -2.11
PCDH9-203ENST00000456367 KRTAP4-1Q9BYQ7 146 aa1.87□□□□□ -2.11
PCDH9-203ENST00000456367 CRCT1Q9UGL9 99 aa1.85□□□□□ -2.11
PCDH9-203ENST00000456367 SACSQ9NZJ4 4579 aa1.85□□□□□ -2.11
PCDH9-203ENST00000456367 MYCBP2O75592 4640 aa1.85□□□□□ -2.11
PCDH9-203ENST00000456367 KRTAP9-9Q9BYP9 154 aa1.85□□□□□ -2.11
PCDH9-203ENST00000456367 KRTAP9-4Q9BYQ2 154 aa1.85□□□□□ -2.11
PCDH9-203ENST00000456367 PLECQ15149 4684 aaKnown RBP1.84□□□□□ -2.11
PCDH9-203ENST00000456367 KRTAP19-8Q3LI54 63 aa1.84□□□□□ -2.11
PCDH9-203ENST00000456367 KRTAP9-6A0A140TA67 174 aa1.84□□□□□ -2.12
PCDH9-203ENST00000456367 MT2AP02795 61 aa1.84□□□□□ -2.12
PCDH9-203ENST00000456367 KRTAP19-5Q3LI72 72 aa1.84□□□□□ -2.12
PCDH9-203ENST00000456367 FAT3Q8TDW7 4589 aa1.83□□□□□ -2.12
PCDH9-203ENST00000456367 VPS13BQ7Z7G8 4022 aa1.83□□□□□ -2.12
PCDH9-203ENST00000456367 FAT2Q9NYQ8 4349 aa1.82□□□□□ -2.12
PCDH9-203ENST00000456367 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.82□□□□□ -2.12
PCDH9-203ENST00000456367 FAT1Q14517 4588 aa1.81□□□□□ -2.12
PCDH9-203ENST00000456367 KRTAP4-5Q9BYR2 181 aa1.81□□□□□ -2.12
PCDH9-203ENST00000456367 MT1HP80294 61 aa1.8□□□□□ -2.12
PCDH9-203ENST00000456367 KRTAP19-1Q8IUB9 90 aa1.8□□□□□ -2.12
PCDH9-203ENST00000456367 PKHD1L1Q86WI1 4243 aa1.8□□□□□ -2.12
PCDH9-203ENST00000456367 DYNC1H1Q14204 4646 aaKnown RBP1.79□□□□□ -2.12
PCDH9-203ENST00000456367 KRTAP10-7P60409 375 aaPredicted RBP1.79□□□□□ -2.12
PCDH9-203ENST00000456367 LRP1BQ9NZR2 4599 aa1.78□□□□□ -2.12
PCDH9-203ENST00000456367 MT1FP04733 61 aa1.78□□□□□ -2.12
PCDH9-203ENST00000456367 APOBP04114 4563 aaKnown RBP1.78□□□□□ -2.12
PCDH9-203ENST00000456367 KRTAP4-12Q9BQ66 201 aa1.78□□□□□ -2.13
PCDH9-203ENST00000456367 KRTAP12-4P60329 112 aa1.77□□□□□ -2.13
PCDH9-203ENST00000456367 KMT2CQ8NEZ4 4911 aaKnown RBP1.76□□□□□ -2.13
PCDH9-203ENST00000456367 KRTAP4-8Q9BYQ9 185 aa1.76□□□□□ -2.13
PCDH9-203ENST00000456367 MT1XP80297 61 aa1.75□□□□□ -2.13
PCDH9-203ENST00000456367 HSPG2P98160 4391 aa1.74□□□□□ -2.13
PCDH9-203ENST00000456367 PKD1P98161 4303 aa1.73□□□□□ -2.13
PCDH9-203ENST00000456367 STARD9Q9P2P6 4700 aa1.73□□□□□ -2.13
PCDH9-203ENST00000456367 KRTAP9-2Q9BYQ4 174 aa1.73□□□□□ -2.13
PCDH9-203ENST00000456367 LRP1Q07954 4544 aaKnown RBP1.73□□□□□ -2.13
PCDH9-203ENST00000456367 RYR3Q15413 4870 aa1.72□□□□□ -2.13
PCDH9-203ENST00000456367 MT1BP07438 61 aa1.71□□□□□ -2.14
PCDH9-203ENST00000456367 HYDINQ4G0P3 5121 aa1.7□□□□□ -2.14
PCDH9-203ENST00000456367 BIRC6Q9NR09 4857 aa1.69□□□□□ -2.14
PCDH9-203ENST00000456367 RYR2Q92736 4967 aa1.67□□□□□ -2.14
PCDH9-203ENST00000456367 LCE3EQ5T5B0 92 aa1.67□□□□□ -2.14
PCDH9-203ENST00000456367 LCE3DQ9BYE3 92 aa1.66□□□□□ -2.14
PCDH9-203ENST00000456367 EPPK1P58107 5090 aaKnown RBP1.66□□□□□ -2.14
PCDH9-203ENST00000456367 MT1LQ93083 61 aa1.65□□□□□ -2.14
PCDH9-203ENST00000456367 MT1GP13640 62 aa1.65□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP9-8Q9BYQ0 159 aa1.64□□□□□ -2.15
PCDH9-203ENST00000456367 HERC1Q15751 4861 aa1.64□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP2-3P0C7H8 128 aa1.64□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP2-4Q9BYR9 128 aa1.64□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP2-1Q9BYU5 128 aa1.64□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP19-2Q3LHN2 52 aa1.63□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP4-2Q9BYR5 136 aa1.63□□□□□ -2.15
PCDH9-203ENST00000456367 LCE3BQ5TA77 95 aa1.62□□□□□ -2.15
PCDH9-203ENST00000456367 KIAA1109Q2LD37 5005 aa1.6□□□□□ -2.15
PCDH9-203ENST00000456367 MT1EP04732 61 aa1.6□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP9-3Q9BYQ3 159 aa1.6□□□□□ -2.15
PCDH9-203ENST00000456367 RYR1P21817 5038 aa1.6□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP9-7A8MTY7 169 aa1.6□□□□□ -2.15
PCDH9-203ENST00000456367 SPRR2FQ96RM1 72 aa1.59□□□□□ -2.15
PCDH9-203ENST00000456367 KRTAP2-2Q9BYT5 123 aa1.58□□□□□ -2.16
PCDH9-203ENST00000456367 LCE5AQ5TCM9 118 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms