RNA–Protein interactions for RNA: ENST00000452776.1

SMCO1-202, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

TSL 1 (best)

Gene SMCO1, Length 1,846 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-202ENST00000452776 BIRC6Q9NR09 4857 aa4.4□□□□□ -1.7
SMCO1-202ENST00000452776 S4R3F8 94 aa4.4□□□□□ -1.7
SMCO1-202ENST00000452776 TENM3Q9P273 2699 aa4.4□□□□□ -1.71
SMCO1-202ENST00000452776 LYSTQ99698 3801 aa4.4□□□□□ -1.71
SMCO1-202ENST00000452776 KRTAP10-6P60371 365 aaPredicted RBP4.39□□□□□ -1.71
SMCO1-202ENST00000452776 MGAM2Q2M2H8 2515 aa4.38□□□□□ -1.71
SMCO1-202ENST00000452776 DNAH10Q8IVF4 4471 aa4.38□□□□□ -1.71
SMCO1-202ENST00000452776 A0A0D9SG42 100 aa4.38□□□□□ -1.71
SMCO1-202ENST00000452776 KRTAP23-1A1A580 65 aa4.38□□□□□ -1.71
SMCO1-202ENST00000452776 DNAH3Q8TD57 4116 aa4.38□□□□□ -1.71
SMCO1-202ENST00000452776 DNAH8Q96JB1 4490 aa4.37□□□□□ -1.71
SMCO1-202ENST00000452776 FRAS1Q86XX4 4008 aa4.36□□□□□ -1.71
SMCO1-202ENST00000452776 CSMD3Q7Z407 3707 aa4.35□□□□□ -1.71
SMCO1-202ENST00000452776 TENM1Q9UKZ4 2725 aa4.34□□□□□ -1.71
SMCO1-202ENST00000452776 KRTAP1-4P0C5Y4 121 aa4.33□□□□□ -1.72
SMCO1-202ENST00000452776 KRTAP13-4Q3LI77 160 aa4.32□□□□□ -1.72
SMCO1-202ENST00000452776 PLAC4Q8WY50 150 aa4.32□□□□□ -1.72
SMCO1-202ENST00000452776 EPPK1P58107 5090 aaKnown RBP4.32□□□□□ -1.72
SMCO1-202ENST00000452776 COL7A1Q02388 2944 aa4.32□□□□□ -1.72
SMCO1-202ENST00000452776 KRTAP10-2P60368 255 aa4.3□□□□□ -1.72
SMCO1-202ENST00000452776 CAMK2N1Q7Z7J9 78 aa4.3□□□□□ -1.72
SMCO1-202ENST00000452776 DNAH9Q9NYC9 4486 aa4.3□□□□□ -1.72
SMCO1-202ENST00000452776 VPS13DQ5THJ4 4388 aa4.3□□□□□ -1.72
SMCO1-202ENST00000452776 PRKDCP78527 4128 aaKnown RBP4.3□□□□□ -1.72
SMCO1-202ENST00000452776 M0QZ58 72 aa4.29□□□□□ -1.72
SMCO1-202ENST00000452776 DYNC2H1Q8NCM8 4307 aaKnown RBP4.28□□□□□ -1.72
SMCO1-202ENST00000452776 KRTAP12-2P59991 146 aa4.27□□□□□ -1.73
SMCO1-202ENST00000452776 KRTAP12-1P59990 96 aa4.26□□□□□ -1.73
SMCO1-202ENST00000452776 HUWE1Q7Z6Z7 4374 aaKnown RBP4.26□□□□□ -1.73
SMCO1-202ENST00000452776 PCLOQ9Y6V0 5065 aa4.25□□□□□ -1.73
SMCO1-202ENST00000452776 HECTD4Q9Y4D8 3996 aa4.24□□□□□ -1.73
SMCO1-202ENST00000452776 HYDINQ4G0P3 5121 aa4.24□□□□□ -1.73
SMCO1-202ENST00000452776 RYR1P21817 5038 aa4.23□□□□□ -1.73
SMCO1-202ENST00000452776 C9orf92A6NGG3 77 aa4.23□□□□□ -1.73
SMCO1-202ENST00000452776 DNAH17Q9UFH2 4485 aa4.21□□□□□ -1.74
SMCO1-202ENST00000452776 CMYA5Q8N3K9 4069 aa4.2□□□□□ -1.74
SMCO1-202ENST00000452776 PP632Q6XCG6 107 aa4.2□□□□□ -1.74
SMCO1-202ENST00000452776 DNAH7Q8WXX0 4024 aa4.19□□□□□ -1.74
SMCO1-202ENST00000452776 STAB2Q8WWQ8 2551 aa4.17□□□□□ -1.74
SMCO1-202ENST00000452776 RYR2Q92736 4967 aa4.16□□□□□ -1.74
SMCO1-202ENST00000452776 HERC2O95714 4834 aa4.14□□□□□ -1.75
SMCO1-202ENST00000452776 DNAH6Q9C0G6 4158 aa4.13□□□□□ -1.75
SMCO1-202ENST00000452776 KRTAP10-1P60331 282 aa4.11□□□□□ -1.75
SMCO1-202ENST00000452776 PLECQ15149 4684 aaKnown RBP4.1□□□□□ -1.75
SMCO1-202ENST00000452776 DNAH2Q9P225 4427 aa4.1□□□□□ -1.75
SMCO1-202ENST00000452776 DNAH11Q96DT5 4516 aa4.09□□□□□ -1.76
SMCO1-202ENST00000452776 PRO2289Q9P1D8 64 aa4.07□□□□□ -1.76
SMCO1-202ENST00000452776 SACSQ9NZJ4 4579 aa4.06□□□□□ -1.76
SMCO1-202ENST00000452776 DMBT1Q9UGM3 2413 aaPredicted RBP4.04□□□□□ -1.76
SMCO1-202ENST00000452776 KMT2AQ03164 3969 aa4.04□□□□□ -1.76
SMCO1-202ENST00000452776 UBR4Q5T4S7 5183 aa4.02□□□□□ -1.77
SMCO1-202ENST00000452776 KRTAP10-8P60410 259 aa4□□□□□ -1.77
SMCO1-202ENST00000452776 INE1O15225 51 aa3.99□□□□□ -1.77
SMCO1-202ENST00000452776 R4GN34 69 aa3.98□□□□□ -1.77
SMCO1-202ENST00000452776 LRP1BQ9NZR2 4599 aa3.96□□□□□ -1.78
SMCO1-202ENST00000452776 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.95□□□□□ -1.78
SMCO1-202ENST00000452776 SPRR5A0A1B0GTR4 108 aa3.95□□□□□ -1.78
SMCO1-202ENST00000452776 DNAH5Q8TE73 4624 aa3.94□□□□□ -1.78
SMCO1-202ENST00000452776 ABCA13Q86UQ4 5058 aa3.93□□□□□ -1.78
SMCO1-202ENST00000452776 KIAA1109Q2LD37 5005 aa3.92□□□□□ -1.78
SMCO1-202ENST00000452776 VPS13BQ7Z7G8 4022 aa3.92□□□□□ -1.78
SMCO1-202ENST00000452776 STARD9Q9P2P6 4700 aa3.9□□□□□ -1.78
SMCO1-202ENST00000452776 HERC1Q15751 4861 aa3.88□□□□□ -1.79
SMCO1-202ENST00000452776 PKHD1L1Q86WI1 4243 aa3.87□□□□□ -1.79
SMCO1-202ENST00000452776 MYCBP2O75592 4640 aa3.82□□□□□ -1.8
SMCO1-202ENST00000452776 PKD1P98161 4303 aa3.82□□□□□ -1.8
SMCO1-202ENST00000452776 KRTAP10-4P60372 401 aaPredicted RBP3.81□□□□□ -1.8
SMCO1-202ENST00000452776 TNP1P09430 55 aa3.81□□□□□ -1.8
SMCO1-202ENST00000452776 PKHD1P08F94 4074 aa3.8□□□□□ -1.8
SMCO1-202ENST00000452776 SMR3BP02814 79 aaPredicted RBP3.8□□□□□ -1.8
SMCO1-202ENST00000452776 Q5VSD8 79 aa3.79□□□□□ -1.8
SMCO1-202ENST00000452776 LRP1Q07954 4544 aaKnown RBP3.79□□□□□ -1.8
SMCO1-202ENST00000452776 APOBP04114 4563 aaKnown RBP3.76□□□□□ -1.81
SMCO1-202ENST00000452776 FAT2Q9NYQ8 4349 aa3.74□□□□□ -1.81
SMCO1-202ENST00000452776 FAT3Q8TDW7 4589 aa3.71□□□□□ -1.82
SMCO1-202ENST00000452776 TNXBP22105 4242 aa3.7□□□□□ -1.82
SMCO1-202ENST00000452776 DYNC1H1Q14204 4646 aaKnown RBP3.69□□□□□ -1.82
SMCO1-202ENST00000452776 KRTAP5-11Q6L8G4 156 aa3.65□□□□□ -1.82
SMCO1-202ENST00000452776 HSPG2P98160 4391 aa3.65□□□□□ -1.83
SMCO1-202ENST00000452776 FAT1Q14517 4588 aa3.64□□□□□ -1.83
SMCO1-202ENST00000452776 A0A1B0GVY2 172 aa3.63□□□□□ -1.83
SMCO1-202ENST00000452776 KRTAP10-7P60409 375 aaPredicted RBP3.6□□□□□ -1.83
SMCO1-202ENST00000452776 HMCN2Q8NDA2 5059 aa3.56□□□□□ -1.84
SMCO1-202ENST00000452776 RNF213Q63HN8 5207 aa3.54□□□□□ -1.84
SMCO1-202ENST00000452776 MT1HL1P0DM35 61 aa3.45□□□□□ -1.86
SMCO1-202ENST00000452776 MUC2Q02817 5179 aa3.44□□□□□ -1.86
SMCO1-202ENST00000452776 FAT4Q6V0I7 4981 aa3.43□□□□□ -1.86
SMCO1-202ENST00000452776 KRTAP8-1Q8IUC2 63 aa3.42□□□□□ -1.86
SMCO1-202ENST00000452776 FLGP20930 4061 aaPredicted RBP3.41□□□□□ -1.86
SMCO1-202ENST00000452776 KRTAP5-9P26371 169 aa3.39□□□□□ -1.87
SMCO1-202ENST00000452776 LCE3AQ5TA76 89 aa3.39□□□□□ -1.87
SMCO1-202ENST00000452776 LCE1AQ5T7P2 110 aa3.35□□□□□ -1.87
SMCO1-202ENST00000452776 KRTAP10-10P60014 251 aa3.34□□□□□ -1.87
SMCO1-202ENST00000452776 KRTAP5-1Q6L8H4 278 aa3.34□□□□□ -1.87
SMCO1-202ENST00000452776 KRTAP5-4Q6L8H1 288 aa3.33□□□□□ -1.88
SMCO1-202ENST00000452776 LRP2P98164 4655 aa3.32□□□□□ -1.88
SMCO1-202ENST00000452776 KRTAP19-2Q3LHN2 52 aa3.32□□□□□ -1.88
SMCO1-202ENST00000452776 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
SMCO1-202ENST00000452776 SPRR2GQ9BYE4 73 aa3.31□□□□□ -1.88
SMCO1-202ENST00000452776 LPAP08519 4548 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms