RNA–Protein interactions for RNA: ENST00000452448.6

EPHA3-202, Transcript of EPH receptor A3, humanhuman

TSL 1 (best) BASIC

Gene EPHA3, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA3-202ENST00000452448 ZNF469Q96JG9 3925 aaPredicted RBP2.55□□□□□ -2
EPHA3-202ENST00000452448 KMT2CQ8NEZ4 4911 aaKnown RBP2.55□□□□□ -2
EPHA3-202ENST00000452448 KRTAP13-1Q8IUC0 172 aa2.52□□□□□ -2.01
EPHA3-202ENST00000452448 PCLOQ9Y6V0 5065 aa2.52□□□□□ -2.01
EPHA3-202ENST00000452448 PRKDCP78527 4128 aaKnown RBP2.52□□□□□ -2.01
EPHA3-202ENST00000452448 TRRAPQ9Y4A5 3859 aa2.52□□□□□ -2.01
EPHA3-202ENST00000452448 RYR2Q92736 4967 aa2.52□□□□□ -2.01
EPHA3-202ENST00000452448 KRTAP1-5Q9BYS1 174 aa2.5□□□□□ -2.01
EPHA3-202ENST00000452448 CUBNO60494 3623 aa2.5□□□□□ -2.01
EPHA3-202ENST00000452448 APLNQ9ULZ1 77 aa2.5□□□□□ -2.01
EPHA3-202ENST00000452448 TENM1Q9UKZ4 2725 aa2.49□□□□□ -2.01
EPHA3-202ENST00000452448 VWFP04275 2813 aa2.49□□□□□ -2.01
EPHA3-202ENST00000452448 TENM3Q9P273 2699 aa2.49□□□□□ -2.01
EPHA3-202ENST00000452448 LCE1AQ5T7P2 110 aa2.48□□□□□ -2.01
EPHA3-202ENST00000452448 EPPK1P58107 5090 aaKnown RBP2.48□□□□□ -2.01
EPHA3-202ENST00000452448 TENM2Q9NT68 2774 aa2.48□□□□□ -2.01
EPHA3-202ENST00000452448 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.48□□□□□ -2.01
EPHA3-202ENST00000452448 KRTAP12-2P59991 146 aa2.47□□□□□ -2.01
EPHA3-202ENST00000452448 AHNAKQ09666 5890 aaKnown RBP2.47□□□□□ -2.01
EPHA3-202ENST00000452448 A0A0D9SG42 100 aa2.45□□□□□ -2.02
EPHA3-202ENST00000452448 KRTAP5-9P26371 169 aa2.44□□□□□ -2.02
EPHA3-202ENST00000452448 DNAH3Q8TD57 4116 aa2.44□□□□□ -2.02
EPHA3-202ENST00000452448 S4R3F8 94 aa2.44□□□□□ -2.02
EPHA3-202ENST00000452448 A0A1B0GVY2 172 aa2.43□□□□□ -2.02
EPHA3-202ENST00000452448 HYDINQ4G0P3 5121 aa2.43□□□□□ -2.02
EPHA3-202ENST00000452448 SACSQ9NZJ4 4579 aa2.43□□□□□ -2.02
EPHA3-202ENST00000452448 CMYA5Q8N3K9 4069 aa2.43□□□□□ -2.02
EPHA3-202ENST00000452448 PP632Q6XCG6 107 aa2.42□□□□□ -2.02
EPHA3-202ENST00000452448 SRRM2Q9UQ35 2752 aaKnown RBP2.42□□□□□ -2.02
EPHA3-202ENST00000452448 DNAH9Q9NYC9 4486 aa2.4□□□□□ -2.03
EPHA3-202ENST00000452448 HUWE1Q7Z6Z7 4374 aaKnown RBP2.39□□□□□ -2.03
EPHA3-202ENST00000452448 SPINK6Q6UWN8 80 aa2.39□□□□□ -2.03
EPHA3-202ENST00000452448 KRTAP13-4Q3LI77 160 aa2.37□□□□□ -2.03
EPHA3-202ENST00000452448 MUC5BQ9HC84 5762 aaPredicted RBP2.36□□□□□ -2.03
EPHA3-202ENST00000452448 LCE1FQ5T754 118 aa2.35□□□□□ -2.03
EPHA3-202ENST00000452448 RYR1P21817 5038 aa2.35□□□□□ -2.03
EPHA3-202ENST00000452448 HECTD4Q9Y4D8 3996 aa2.35□□□□□ -2.03
EPHA3-202ENST00000452448 DNAH7Q8WXX0 4024 aa2.34□□□□□ -2.03
EPHA3-202ENST00000452448 KRTAP13-2Q52LG2 175 aa2.33□□□□□ -2.04
EPHA3-202ENST00000452448 STAB2Q8WWQ8 2551 aa2.33□□□□□ -2.04
EPHA3-202ENST00000452448 DNAH10Q8IVF4 4471 aa2.33□□□□□ -2.04
EPHA3-202ENST00000452448 DNAH11Q96DT5 4516 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 DMBT1Q9UGM3 2413 aaPredicted RBP2.32□□□□□ -2.04
EPHA3-202ENST00000452448 RPS29P62273 56 aaKnown RBP2.32□□□□□ -2.04
EPHA3-202ENST00000452448 LYSTQ99698 3801 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 KRTAP2-2Q9BYT5 123 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 KIAA1109Q2LD37 5005 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 SPRR5A0A1B0GTR4 108 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 CRCT1Q9UGL9 99 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 COL7A1Q02388 2944 aa2.32□□□□□ -2.04
EPHA3-202ENST00000452448 PLECQ15149 4684 aaKnown RBP2.31□□□□□ -2.04
EPHA3-202ENST00000452448 KRTAP12-1P59990 96 aa2.31□□□□□ -2.04
EPHA3-202ENST00000452448 KRTAP10-6P60371 365 aaPredicted RBP2.3□□□□□ -2.04
EPHA3-202ENST00000452448 DYNC1H1Q14204 4646 aaKnown RBP2.3□□□□□ -2.04
EPHA3-202ENST00000452448 KRTAP1-4P0C5Y4 121 aa2.3□□□□□ -2.04
EPHA3-202ENST00000452448 DNAH6Q9C0G6 4158 aa2.3□□□□□ -2.04
EPHA3-202ENST00000452448 DNAH17Q9UFH2 4485 aa2.28□□□□□ -2.04
EPHA3-202ENST00000452448 VPS13DQ5THJ4 4388 aa2.28□□□□□ -2.04
EPHA3-202ENST00000452448 ABCA13Q86UQ4 5058 aa2.28□□□□□ -2.04
EPHA3-202ENST00000452448 Q5VSD8 79 aa2.28□□□□□ -2.04
EPHA3-202ENST00000452448 LRP1BQ9NZR2 4599 aa2.28□□□□□ -2.04
EPHA3-202ENST00000452448 KRTAP10-1P60331 282 aa2.27□□□□□ -2.05
EPHA3-202ENST00000452448 DNAH8Q96JB1 4490 aa2.26□□□□□ -2.05
EPHA3-202ENST00000452448 KMT2AQ03164 3969 aa2.26□□□□□ -2.05
EPHA3-202ENST00000452448 CSMD3Q7Z407 3707 aa2.25□□□□□ -2.05
EPHA3-202ENST00000452448 LCE3CQ5T5A8 94 aa2.24□□□□□ -2.05
EPHA3-202ENST00000452448 FAT2Q9NYQ8 4349 aa2.23□□□□□ -2.05
EPHA3-202ENST00000452448 FRAS1Q86XX4 4008 aa2.23□□□□□ -2.05
EPHA3-202ENST00000452448 UBR4Q5T4S7 5183 aa2.22□□□□□ -2.05
EPHA3-202ENST00000452448 STARD9Q9P2P6 4700 aa2.22□□□□□ -2.05
EPHA3-202ENST00000452448 DNAH2Q9P225 4427 aa2.21□□□□□ -2.05
EPHA3-202ENST00000452448 VPS13BQ7Z7G8 4022 aa2.18□□□□□ -2.06
EPHA3-202ENST00000452448 HSPG2P98160 4391 aa2.18□□□□□ -2.06
EPHA3-202ENST00000452448 PKHD1P08F94 4074 aa2.18□□□□□ -2.06
EPHA3-202ENST00000452448 NEBP20929 6669 aa2.18□□□□□ -2.06
EPHA3-202ENST00000452448 C9orf92A6NGG3 77 aa2.18□□□□□ -2.06
EPHA3-202ENST00000452448 HERC1Q15751 4861 aa2.17□□□□□ -2.06
EPHA3-202ENST00000452448 DNAH5Q8TE73 4624 aa2.15□□□□□ -2.06
EPHA3-202ENST00000452448 KRTAP5-4Q6L8H1 288 aa2.15□□□□□ -2.07
EPHA3-202ENST00000452448 KRTAP10-4P60372 401 aaPredicted RBP2.14□□□□□ -2.07
EPHA3-202ENST00000452448 MYCBP2O75592 4640 aa2.14□□□□□ -2.07
EPHA3-202ENST00000452448 HMCN2Q8NDA2 5059 aa2.13□□□□□ -2.07
EPHA3-202ENST00000452448 PKHD1L1Q86WI1 4243 aa2.12□□□□□ -2.07
EPHA3-202ENST00000452448 M0QZ58 72 aa2.12□□□□□ -2.07
EPHA3-202ENST00000452448 SMR3BP02814 79 aaPredicted RBP2.12□□□□□ -2.07
EPHA3-202ENST00000452448 FAT3Q8TDW7 4589 aa2.11□□□□□ -2.07
EPHA3-202ENST00000452448 PKD1P98161 4303 aa2.11□□□□□ -2.07
EPHA3-202ENST00000452448 APOBP04114 4563 aaKnown RBP2.09□□□□□ -2.07
EPHA3-202ENST00000452448 KRTAP10-12P60413 245 aa2.09□□□□□ -2.07
EPHA3-202ENST00000452448 LCE3EQ5T5B0 92 aa2.09□□□□□ -2.07
EPHA3-202ENST00000452448 MT3P25713 68 aa2.08□□□□□ -2.08
EPHA3-202ENST00000452448 MT1HL1P0DM35 61 aa2.08□□□□□ -2.08
EPHA3-202ENST00000452448 FAT4Q6V0I7 4981 aa2.07□□□□□ -2.08
EPHA3-202ENST00000452448 RNF213Q63HN8 5207 aa2.06□□□□□ -2.08
EPHA3-202ENST00000452448 KRTAP10-10P60014 251 aa2.06□□□□□ -2.08
EPHA3-202ENST00000452448 AHNAK2Q8IVF2 5795 aa2.01□□□□□ -2.09
EPHA3-202ENST00000452448 TNXBP22105 4242 aa2□□□□□ -2.09
EPHA3-202ENST00000452448 FAT1Q14517 4588 aa1.99□□□□□ -2.09
EPHA3-202ENST00000452448 MUC2Q02817 5179 aa1.97□□□□□ -2.09
EPHA3-202ENST00000452448 LRP1Q07954 4544 aaKnown RBP1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms