RNA–Protein interactions for RNA: ENST00000447540.5

CHD9-203, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 5 BASIC

Gene CHD9, Length 11,509 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-203ENST00000447540 M0R2T5 61 aa1.4□□□□□ -2.19
CHD9-203ENST00000447540 DNAH11Q96DT5 4516 aa1.4□□□□□ -2.19
CHD9-203ENST00000447540 DNHD1Q96M86 4753 aa1.38□□□□□ -2.19
CHD9-203ENST00000447540 SPRR5A0A1B0GTR4 108 aa1.38□□□□□ -2.19
CHD9-203ENST00000447540 DNAH1Q9P2D7 4330 aa1.38□□□□□ -2.19
CHD9-203ENST00000447540 KMT2AQ03164 3969 aa1.37□□□□□ -2.19
CHD9-203ENST00000447540 PRKDCP78527 4128 aaKnown RBP1.36□□□□□ -2.19
CHD9-203ENST00000447540 DNAH6Q9C0G6 4158 aa1.36□□□□□ -2.19
CHD9-203ENST00000447540 DNAH2Q9P225 4427 aa1.36□□□□□ -2.19
CHD9-203ENST00000447540 KRTAP10-1P60331 282 aa1.35□□□□□ -2.19
CHD9-203ENST00000447540 VPS13BQ7Z7G8 4022 aa1.35□□□□□ -2.19
CHD9-203ENST00000447540 HUWE1Q7Z6Z7 4374 aaKnown RBP1.34□□□□□ -2.19
CHD9-203ENST00000447540 KRTAP10-2P60368 255 aa1.33□□□□□ -2.2
CHD9-203ENST00000447540 DYNC2H1Q8NCM8 4307 aaKnown RBP1.3□□□□□ -2.2
CHD9-203ENST00000447540 FAT2Q9NYQ8 4349 aa1.3□□□□□ -2.2
CHD9-203ENST00000447540 LORP23490 312 aaPredicted RBP1.3□□□□□ -2.2
CHD9-203ENST00000447540 PKHD1P08F94 4074 aa1.3□□□□□ -2.2
CHD9-203ENST00000447540 DNAH8Q96JB1 4490 aa1.3□□□□□ -2.2
CHD9-203ENST00000447540 HYDINQ4G0P3 5121 aa1.29□□□□□ -2.2
CHD9-203ENST00000447540 PKD1P98161 4303 aa1.29□□□□□ -2.2
CHD9-203ENST00000447540 DNAH17Q9UFH2 4485 aa1.29□□□□□ -2.2
CHD9-203ENST00000447540 STARD9Q9P2P6 4700 aa1.28□□□□□ -2.2
CHD9-203ENST00000447540 DNAH9Q9NYC9 4486 aa1.28□□□□□ -2.21
CHD9-203ENST00000447540 A0A1B0GVY2 172 aa1.27□□□□□ -2.21
CHD9-203ENST00000447540 PCLOQ9Y6V0 5065 aa1.26□□□□□ -2.21
CHD9-203ENST00000447540 KRTAP8-1Q8IUC2 63 aa1.25□□□□□ -2.21
CHD9-203ENST00000447540 VPS13DQ5THJ4 4388 aa1.25□□□□□ -2.21
CHD9-203ENST00000447540 DNAH5Q8TE73 4624 aa1.25□□□□□ -2.21
CHD9-203ENST00000447540 PLECQ15149 4684 aaKnown RBP1.25□□□□□ -2.21
CHD9-203ENST00000447540 SMR3BP02814 79 aaPredicted RBP1.24□□□□□ -2.21
CHD9-203ENST00000447540 KMT2CQ8NEZ4 4911 aaKnown RBP1.24□□□□□ -2.21
CHD9-203ENST00000447540 DYNC1H1Q14204 4646 aaKnown RBP1.24□□□□□ -2.21
CHD9-203ENST00000447540 RYR3Q15413 4870 aa1.21□□□□□ -2.21
CHD9-203ENST00000447540 FLGP20930 4061 aaPredicted RBP1.21□□□□□ -2.22
CHD9-203ENST00000447540 HSPG2P98160 4391 aa1.21□□□□□ -2.22
CHD9-203ENST00000447540 SACSQ9NZJ4 4579 aa1.21□□□□□ -2.22
CHD9-203ENST00000447540 APOBP04114 4563 aaKnown RBP1.2□□□□□ -2.22
CHD9-203ENST00000447540 KRTAP17-1Q9BYP8 105 aa1.2□□□□□ -2.22
CHD9-203ENST00000447540 KRTAP12-3P60328 96 aa1.2□□□□□ -2.22
CHD9-203ENST00000447540 LCE2DQ5TA82 110 aaPredicted RBP1.2□□□□□ -2.22
CHD9-203ENST00000447540 LRP1Q07954 4544 aaKnown RBP1.19□□□□□ -2.22
CHD9-203ENST00000447540 PKHD1L1Q86WI1 4243 aa1.18□□□□□ -2.22
CHD9-203ENST00000447540 TNXBP22105 4242 aa1.16□□□□□ -2.22
CHD9-203ENST00000447540 KRTAP10-12P60413 245 aa1.16□□□□□ -2.22
CHD9-203ENST00000447540 KRTAP10-10P60014 251 aa1.16□□□□□ -2.22
CHD9-203ENST00000447540 MYCBP2O75592 4640 aa1.15□□□□□ -2.22
CHD9-203ENST00000447540 ABCA13Q86UQ4 5058 aa1.15□□□□□ -2.23
CHD9-203ENST00000447540 KRTAP10-4P60372 401 aaPredicted RBP1.14□□□□□ -2.23
CHD9-203ENST00000447540 SPRR2GQ9BYE4 73 aa1.13□□□□□ -2.23
CHD9-203ENST00000447540 FAT1Q14517 4588 aa1.12□□□□□ -2.23
CHD9-203ENST00000447540 KRTAP10-7P60409 375 aaPredicted RBP1.12□□□□□ -2.23
CHD9-203ENST00000447540 LCE3AQ5TA76 89 aa1.12□□□□□ -2.23
CHD9-203ENST00000447540 EPPK1P58107 5090 aaKnown RBP1.11□□□□□ -2.23
CHD9-203ENST00000447540 FAT3Q8TDW7 4589 aa1.11□□□□□ -2.23
CHD9-203ENST00000447540 RYR2Q92736 4967 aa1.11□□□□□ -2.23
CHD9-203ENST00000447540 LRP1BQ9NZR2 4599 aa1.1□□□□□ -2.23
CHD9-203ENST00000447540 LCE1AQ5T7P2 110 aa1.1□□□□□ -2.23
CHD9-203ENST00000447540 LCE3CQ5T5A8 94 aa1.09□□□□□ -2.24
CHD9-203ENST00000447540 SYNE1Q8NF91 8797 aaKnown RBP1.09□□□□□ -2.24
CHD9-203ENST00000447540 RNF213Q63HN8 5207 aa1.08□□□□□ -2.24
CHD9-203ENST00000447540 MUC17Q685J3 4493 aa1.08□□□□□ -2.24
CHD9-203ENST00000447540 LCE2AQ5TA79 106 aaPredicted RBP1.07□□□□□ -2.24
CHD9-203ENST00000447540 LCE2CQ5TA81 110 aa1.07□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP9-6A0A140TA67 174 aa1.07□□□□□ -2.24
CHD9-203ENST00000447540 BIRC6Q9NR09 4857 aa1.07□□□□□ -2.24
CHD9-203ENST00000447540 MUC5BQ9HC84 5762 aaPredicted RBP1.07□□□□□ -2.24
CHD9-203ENST00000447540 MT1HL1P0DM35 61 aa1.07□□□□□ -2.24
CHD9-203ENST00000447540 HERC2O95714 4834 aa1.06□□□□□ -2.24
CHD9-203ENST00000447540 MUC2Q02817 5179 aa1.06□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP19-8Q3LI54 63 aa1.06□□□□□ -2.24
CHD9-203ENST00000447540 KIAA1109Q2LD37 5005 aa1.05□□□□□ -2.24
CHD9-203ENST00000447540 LCE2BO14633 110 aa1.05□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP2-3P0C7H8 128 aa1.05□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP2-4Q9BYR9 128 aa1.05□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP2-1Q9BYU5 128 aa1.05□□□□□ -2.24
CHD9-203ENST00000447540 LPAP08519 4548 aa1.04□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP10-5P60370 271 aa1.03□□□□□ -2.24
CHD9-203ENST00000447540 KRTAP12-4P60329 112 aa1.03□□□□□ -2.24
CHD9-203ENST00000447540 UBR4Q5T4S7 5183 aa1.02□□□□□ -2.25
CHD9-203ENST00000447540 HERC1Q15751 4861 aa1.02□□□□□ -2.25
CHD9-203ENST00000447540 KRTAP9-2Q9BYQ4 174 aa1.02□□□□□ -2.25
CHD9-203ENST00000447540 LCE3BQ5TA77 95 aa1.02□□□□□ -2.25
CHD9-203ENST00000447540 OBSCNQ5VST9 7968 aa1.02□□□□□ -2.25
CHD9-203ENST00000447540 KRTAP19-1Q8IUB9 90 aa1□□□□□ -2.25
CHD9-203ENST00000447540 CRCT1Q9UGL9 99 aa1□□□□□ -2.25
CHD9-203ENST00000447540 LRP2P98164 4655 aa1□□□□□ -2.25
CHD9-203ENST00000447540 HMCN2Q8NDA2 5059 aa0.99□□□□□ -2.25
CHD9-203ENST00000447540 MT1FP04733 61 aa0.98□□□□□ -2.25
CHD9-203ENST00000447540 MT1LQ93083 61 aa0.98□□□□□ -2.25
CHD9-203ENST00000447540 KRTAP4-5Q9BYR2 181 aa0.98□□□□□ -2.25
CHD9-203ENST00000447540 LCE3EQ5T5B0 92 aa0.98□□□□□ -2.25
CHD9-203ENST00000447540 LOC100996750A0A140TA64 210 aa0.97□□□□□ -2.25
CHD9-203ENST00000447540 KRTAP4-6Q9BYQ5 205 aa0.97□□□□□ -2.25
CHD9-203ENST00000447540 KRTAP19-5Q3LI72 72 aa0.96□□□□□ -2.26
CHD9-203ENST00000447540 KRTAP9-7A8MTY7 169 aa0.95□□□□□ -2.26
CHD9-203ENST00000447540 MT1AP04731 61 aa0.95□□□□□ -2.26
CHD9-203ENST00000447540 MT1XP80297 61 aa0.95□□□□□ -2.26
CHD9-203ENST00000447540 MT1GP13640 62 aa0.94□□□□□ -2.26
CHD9-203ENST00000447540 MT1EP04732 61 aa0.94□□□□□ -2.26
CHD9-203ENST00000447540 KRTAP2-2Q9BYT5 123 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms