RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 KRTAP10-10P60014 251 aa7.79□□□□□ -1.16
TCOF1-206ENST00000445265 DNAH5Q8TE73 4624 aa7.76□□□□□ -1.17
TCOF1-206ENST00000445265 STARD9Q9P2P6 4700 aa7.72□□□□□ -1.17
TCOF1-206ENST00000445265 DNAH3Q8TD57 4116 aa7.7□□□□□ -1.18
TCOF1-206ENST00000445265 DNAH8Q96JB1 4490 aa7.64□□□□□ -1.19
TCOF1-206ENST00000445265 KRTAP15-1Q3LI76 137 aa7.63□□□□□ -1.19
TCOF1-206ENST00000445265 DNAH2Q9P225 4427 aa7.62□□□□□ -1.19
TCOF1-206ENST00000445265 PRO2289Q9P1D8 64 aa7.57□□□□□ -1.2
TCOF1-206ENST00000445265 DNHD1Q96M86 4753 aa7.54□□□□□ -1.2
TCOF1-206ENST00000445265 LRP1BQ9NZR2 4599 aa7.54□□□□□ -1.2
TCOF1-206ENST00000445265 ANK2Q01484 3957 aa7.54□□□□□ -1.2
TCOF1-206ENST00000445265 PRKDCP78527 4128 aaKnown RBP7.5□□□□□ -1.21
TCOF1-206ENST00000445265 KRTAP4-5Q9BYR2 181 aa7.49□□□□□ -1.21
TCOF1-206ENST00000445265 DYNC1H1Q14204 4646 aaKnown RBP7.49□□□□□ -1.21
TCOF1-206ENST00000445265 DYNC2H1Q8NCM8 4307 aaKnown RBP7.48□□□□□ -1.21
TCOF1-206ENST00000445265 KMT2AQ03164 3969 aa7.44□□□□□ -1.22
TCOF1-206ENST00000445265 CMYA5Q8N3K9 4069 aa7.44□□□□□ -1.22
TCOF1-206ENST00000445265 FAT1Q14517 4588 aa7.43□□□□□ -1.22
TCOF1-206ENST00000445265 SACSQ9NZJ4 4579 aa7.39□□□□□ -1.23
TCOF1-206ENST00000445265 LORP23490 312 aaPredicted RBP7.36□□□□□ -1.23
TCOF1-206ENST00000445265 VPS13BQ7Z7G8 4022 aa7.31□□□□□ -1.24
TCOF1-206ENST00000445265 FAT2Q9NYQ8 4349 aa7.3□□□□□ -1.24
TCOF1-206ENST00000445265 HECTD4Q9Y4D8 3996 aa7.29□□□□□ -1.24
TCOF1-206ENST00000445265 KRTAP23-1A1A580 65 aa7.27□□□□□ -1.25
TCOF1-206ENST00000445265 LYSTQ99698 3801 aa7.27□□□□□ -1.25
TCOF1-206ENST00000445265 FRAS1Q86XX4 4008 aa7.25□□□□□ -1.25
TCOF1-206ENST00000445265 DNAH6Q9C0G6 4158 aa7.2□□□□□ -1.26
TCOF1-206ENST00000445265 DNAH7Q8WXX0 4024 aa7.19□□□□□ -1.26
TCOF1-206ENST00000445265 KRTAP4-1Q9BYQ7 146 aa7.16□□□□□ -1.26
TCOF1-206ENST00000445265 APOBP04114 4563 aaKnown RBP7.09□□□□□ -1.27
TCOF1-206ENST00000445265 RYR1P21817 5038 aa7.07□□□□□ -1.28
TCOF1-206ENST00000445265 KRTAP10-12P60413 245 aa7.04□□□□□ -1.28
TCOF1-206ENST00000445265 MYCBP2O75592 4640 aa7□□□□□ -1.29
TCOF1-206ENST00000445265 LCE3AQ5TA76 89 aa6.98□□□□□ -1.29
TCOF1-206ENST00000445265 KIAA1109Q2LD37 5005 aa6.96□□□□□ -1.3
TCOF1-206ENST00000445265 KRTAP12-3P60328 96 aa6.94□□□□□ -1.3
TCOF1-206ENST00000445265 LRP1Q07954 4544 aaKnown RBP6.93□□□□□ -1.3
TCOF1-206ENST00000445265 KRTAP17-1Q9BYP8 105 aa6.92□□□□□ -1.3
TCOF1-206ENST00000445265 HYDINQ4G0P3 5121 aa6.91□□□□□ -1.3
TCOF1-206ENST00000445265 INE1O15225 51 aa6.9□□□□□ -1.31
TCOF1-206ENST00000445265 FAT3Q8TDW7 4589 aa6.89□□□□□ -1.31
TCOF1-206ENST00000445265 SPRR2GQ9BYE4 73 aa6.85□□□□□ -1.31
TCOF1-206ENST00000445265 RYR3Q15413 4870 aa6.84□□□□□ -1.31
TCOF1-206ENST00000445265 RYR2Q92736 4967 aa6.83□□□□□ -1.32
TCOF1-206ENST00000445265 PKHD1P08F94 4074 aa6.79□□□□□ -1.32
TCOF1-206ENST00000445265 MT1HP80294 61 aa6.76□□□□□ -1.33
TCOF1-206ENST00000445265 PKD1P98161 4303 aa6.75□□□□□ -1.33
TCOF1-206ENST00000445265 MT2AP02795 61 aa6.72□□□□□ -1.33
TCOF1-206ENST00000445265 LRP2P98164 4655 aa6.63□□□□□ -1.35
TCOF1-206ENST00000445265 MT1FP04733 61 aa6.62□□□□□ -1.35
TCOF1-206ENST00000445265 HSPG2P98160 4391 aa6.61□□□□□ -1.35
TCOF1-206ENST00000445265 PKHD1L1Q86WI1 4243 aa6.57□□□□□ -1.36
TCOF1-206ENST00000445265 KMT2CQ8NEZ4 4911 aaKnown RBP6.54□□□□□ -1.36
TCOF1-206ENST00000445265 KRTAP19-1Q8IUB9 90 aa6.54□□□□□ -1.36
TCOF1-206ENST00000445265 KRTAP8-1Q8IUC2 63 aa6.54□□□□□ -1.36
TCOF1-206ENST00000445265 KRTAP19-8Q3LI54 63 aa6.44□□□□□ -1.38
TCOF1-206ENST00000445265 TNXBP22105 4242 aa6.44□□□□□ -1.38
TCOF1-206ENST00000445265 HERC2O95714 4834 aa6.43□□□□□ -1.38
TCOF1-206ENST00000445265 KRTAP19-2Q3LHN2 52 aa6.36□□□□□ -1.39
TCOF1-206ENST00000445265 SPRR5A0A1B0GTR4 108 aa6.33□□□□□ -1.4
TCOF1-206ENST00000445265 LCE2CQ5TA81 110 aa6.33□□□□□ -1.4
TCOF1-206ENST00000445265 LPAP08519 4548 aa6.3□□□□□ -1.4
TCOF1-206ENST00000445265 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
TCOF1-206ENST00000445265 CRCT1Q9UGL9 99 aa6.28□□□□□ -1.4
TCOF1-206ENST00000445265 MT1XP80297 61 aa6.26□□□□□ -1.41
TCOF1-206ENST00000445265 KRTAP9-8Q9BYQ0 159 aa6.26□□□□□ -1.41
TCOF1-206ENST00000445265 LCE3CQ5T5A8 94 aa6.24□□□□□ -1.41
TCOF1-206ENST00000445265 MT1BP07438 61 aa6.24□□□□□ -1.41
TCOF1-206ENST00000445265 KRTAP10-7P60409 375 aaPredicted RBP6.22□□□□□ -1.41
TCOF1-206ENST00000445265 KRTAP10-5P60370 271 aa6.22□□□□□ -1.41
TCOF1-206ENST00000445265 EPPK1P58107 5090 aaKnown RBP6.21□□□□□ -1.42
TCOF1-206ENST00000445265 BIRC6Q9NR09 4857 aa6.2□□□□□ -1.42
TCOF1-206ENST00000445265 HERC1Q15751 4861 aa6.17□□□□□ -1.42
TCOF1-206ENST00000445265 MUC17Q685J3 4493 aa6.16□□□□□ -1.42
TCOF1-206ENST00000445265 KRTAP19-4Q3LI73 84 aa6.16□□□□□ -1.42
TCOF1-206ENST00000445265 FLGP20930 4061 aaPredicted RBP6.11□□□□□ -1.43
TCOF1-206ENST00000445265 KRTAP9-3Q9BYQ3 159 aa6.06□□□□□ -1.44
TCOF1-206ENST00000445265 ABCA13Q86UQ4 5058 aa6.03□□□□□ -1.44
TCOF1-206ENST00000445265 PCLOQ9Y6V0 5065 aa6.01□□□□□ -1.45
TCOF1-206ENST00000445265 KRTAP4-8A0A0G2JLE6 195 aa5.83□□□□□ -1.48
TCOF1-206ENST00000445265 KRTAP4-8Q9BYQ9 185 aa5.83□□□□□ -1.48
TCOF1-206ENST00000445265 LCE2BO14633 110 aa5.76□□□□□ -1.49
TCOF1-206ENST00000445265 SPRR2FQ96RM1 72 aa5.76□□□□□ -1.49
TCOF1-206ENST00000445265 RNF213Q63HN8 5207 aa5.67□□□□□ -1.5
TCOF1-206ENST00000445265 HMCN2Q8NDA2 5059 aa5.66□□□□□ -1.5
TCOF1-206ENST00000445265 FAT4Q6V0I7 4981 aa5.66□□□□□ -1.5
TCOF1-206ENST00000445265 MT1GP13640 62 aa5.59□□□□□ -1.51
TCOF1-206ENST00000445265 MT1LQ93083 61 aa5.59□□□□□ -1.52
TCOF1-206ENST00000445265 MT1EP04732 61 aa5.55□□□□□ -1.52
TCOF1-206ENST00000445265 MUC2Q02817 5179 aa5.55□□□□□ -1.52
TCOF1-206ENST00000445265 KRTAP4-7Q9BYR0 210 aa5.54□□□□□ -1.52
TCOF1-206ENST00000445265 UBR4Q5T4S7 5183 aa5.53□□□□□ -1.52
TCOF1-206ENST00000445265 KRTAP12-4P60329 112 aa5.48□□□□□ -1.53
TCOF1-206ENST00000445265 KRTAP19-3Q7Z4W3 81 aa5.44□□□□□ -1.54
TCOF1-206ENST00000445265 LCE3BQ5TA77 95 aa5.43□□□□□ -1.54
TCOF1-206ENST00000445265 LCE2AQ5TA79 106 aaPredicted RBP5.41□□□□□ -1.54
TCOF1-206ENST00000445265 KRTAP19-7Q3SYF9 63 aa5.4□□□□□ -1.55
TCOF1-206ENST00000445265 KRTAP19-6Q3LI70 58 aa5.35□□□□□ -1.55
TCOF1-206ENST00000445265 FSIP2Q5CZC0 6907 aa5.3□□□□□ -1.56
TCOF1-206ENST00000445265 MT1MQ8N339 61 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms