RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 CUBNO60494 3623 aa2.85□□□□□ -1.95
MCF2-205ENST00000437564 POLQO75417 2590 aa2.84□□□□□ -1.95
MCF2-205ENST00000437564 ATRQ13535 2644 aa2.84□□□□□ -1.96
MCF2-205ENST00000437564 ANK2Q01484 3957 aa2.83□□□□□ -1.96
MCF2-205ENST00000437564 USP24Q9UPU5 2620 aa2.83□□□□□ -1.96
MCF2-205ENST00000437564 MT3P25713 68 aa2.83□□□□□ -1.96
MCF2-205ENST00000437564 FASNP49327 2511 aaKnown RBP2.83□□□□□ -1.96
MCF2-205ENST00000437564 FBN2P35556 2912 aa2.83□□□□□ -1.96
MCF2-205ENST00000437564 ANK3Q12955 4377 aaKnown RBP2.82□□□□□ -1.96
MCF2-205ENST00000437564 LYSTQ99698 3801 aa2.82□□□□□ -1.96
MCF2-205ENST00000437564 PKD1L1Q8TDX9 2849 aa2.82□□□□□ -1.96
MCF2-205ENST00000437564 DNAH8Q96JB1 4490 aa2.81□□□□□ -1.96
MCF2-205ENST00000437564 KRTAP5-4Q6L8H1 288 aa2.8□□□□□ -1.96
MCF2-205ENST00000437564 STAB2Q8WWQ8 2551 aa2.8□□□□□ -1.96
MCF2-205ENST00000437564 MYCBP2O75592 4640 aa2.8□□□□□ -1.96
MCF2-205ENST00000437564 TNP1P09430 55 aa2.78□□□□□ -1.96
MCF2-205ENST00000437564 KRTAP1-4P0C5Y4 121 aa2.78□□□□□ -1.96
MCF2-205ENST00000437564 FBN3Q75N90 2809 aa2.78□□□□□ -1.96
MCF2-205ENST00000437564 C9orf92A6NGG3 77 aa2.78□□□□□ -1.97
MCF2-205ENST00000437564 ZNF292O60281 2723 aa2.77□□□□□ -1.97
MCF2-205ENST00000437564 SMR3AQ99954 134 aa2.77□□□□□ -1.97
MCF2-205ENST00000437564 DNAH10Q8IVF4 4471 aa2.76□□□□□ -1.97
MCF2-205ENST00000437564 ACACBO00763 2458 aa2.76□□□□□ -1.97
MCF2-205ENST00000437564 DNAH17Q9UFH2 4485 aa2.74□□□□□ -1.97
MCF2-205ENST00000437564 KRTAP10-10P60014 251 aa2.74□□□□□ -1.97
MCF2-205ENST00000437564 ZANQ9Y493 2812 aa2.74□□□□□ -1.97
MCF2-205ENST00000437564 DNAH6Q9C0G6 4158 aa2.73□□□□□ -1.97
MCF2-205ENST00000437564 DNAH9Q9NYC9 4486 aa2.72□□□□□ -1.97
MCF2-205ENST00000437564 DYNC2H1Q8NCM8 4307 aaKnown RBP2.72□□□□□ -1.97
MCF2-205ENST00000437564 FLNCQ14315 2725 aa2.71□□□□□ -1.98
MCF2-205ENST00000437564 LCE1EQ5T753 118 aa2.71□□□□□ -1.98
MCF2-205ENST00000437564 KRTAP5-1Q6L8H4 278 aa2.71□□□□□ -1.98
MCF2-205ENST00000437564 LCE1FQ5T754 118 aa2.7□□□□□ -1.98
MCF2-205ENST00000437564 MYO18BQ8IUG5 2567 aa2.7□□□□□ -1.98
MCF2-205ENST00000437564 NOTCH2Q04721 2471 aa2.7□□□□□ -1.98
MCF2-205ENST00000437564 CMYA5Q8N3K9 4069 aa2.69□□□□□ -1.98
MCF2-205ENST00000437564 NOTCH1P46531 2555 aa2.68□□□□□ -1.98
MCF2-205ENST00000437564 TEP1Q99973 2627 aaKnown RBP2.68□□□□□ -1.98
MCF2-205ENST00000437564 DNAH3Q8TD57 4116 aa2.68□□□□□ -1.98
MCF2-205ENST00000437564 DNAH7Q8WXX0 4024 aa2.67□□□□□ -1.98
MCF2-205ENST00000437564 KRTAP2-2Q9BYT5 123 aa2.67□□□□□ -1.98
MCF2-205ENST00000437564 PRKDCP78527 4128 aaKnown RBP2.66□□□□□ -1.98
MCF2-205ENST00000437564 DNAH2Q9P225 4427 aa2.65□□□□□ -1.99
MCF2-205ENST00000437564 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
MCF2-205ENST00000437564 KMT2AQ03164 3969 aa2.64□□□□□ -1.99
MCF2-205ENST00000437564 TENM3Q9P273 2699 aa2.63□□□□□ -1.99
MCF2-205ENST00000437564 HUWE1Q7Z6Z7 4374 aaKnown RBP2.61□□□□□ -1.99
MCF2-205ENST00000437564 FLNAP21333 2647 aaKnown RBP2.6□□□□□ -1.99
MCF2-205ENST00000437564 HECTD4Q9Y4D8 3996 aa2.6□□□□□ -1.99
MCF2-205ENST00000437564 NSD1Q96L73 2696 aaPredicted RBP2.59□□□□□ -1.99
MCF2-205ENST00000437564 KRTAP10-1P60331 282 aa2.58□□□□□ -2
MCF2-205ENST00000437564 TENM1Q9UKZ4 2725 aa2.57□□□□□ -2
MCF2-205ENST00000437564 MGAM2Q2M2H8 2515 aa2.56□□□□□ -2
MCF2-205ENST00000437564 IGSF10Q6WRI0 2623 aa2.56□□□□□ -2
MCF2-205ENST00000437564 APOBP04114 4563 aaKnown RBP2.56□□□□□ -2
MCF2-205ENST00000437564 STAB1Q9NY15 2570 aa2.55□□□□□ -2
MCF2-205ENST00000437564 KRTAP5-2Q701N4 177 aa2.54□□□□□ -2
MCF2-205ENST00000437564 MAST4O15021 2626 aa2.54□□□□□ -2
MCF2-205ENST00000437564 PKD1P98161 4303 aa2.52□□□□□ -2.01
MCF2-205ENST00000437564 SACSQ9NZJ4 4579 aa2.52□□□□□ -2.01
MCF2-205ENST00000437564 KRTAP10-12P60413 245 aa2.5□□□□□ -2.01
MCF2-205ENST00000437564 FLNBO75369 2602 aaKnown RBP2.5□□□□□ -2.01
MCF2-205ENST00000437564 ZNF469Q96JG9 3925 aaPredicted RBP2.49□□□□□ -2.01
MCF2-205ENST00000437564 LCE3CQ5T5A8 94 aa2.49□□□□□ -2.01
MCF2-205ENST00000437564 VPS13BQ7Z7G8 4022 aa2.48□□□□□ -2.01
MCF2-205ENST00000437564 KRTAP8-1Q8IUC2 63 aa2.47□□□□□ -2.01
MCF2-205ENST00000437564 FLGP20930 4061 aaPredicted RBP2.47□□□□□ -2.01
MCF2-205ENST00000437564 KRTAP5-8O75690 187 aa2.44□□□□□ -2.02
MCF2-205ENST00000437564 PKHD1L1Q86WI1 4243 aa2.43□□□□□ -2.02
MCF2-205ENST00000437564 LRP1Q07954 4544 aaKnown RBP2.43□□□□□ -2.02
MCF2-205ENST00000437564 LCE3AQ5TA76 89 aa2.42□□□□□ -2.02
MCF2-205ENST00000437564 KRTAP2-3P0C7H8 128 aa2.41□□□□□ -2.02
MCF2-205ENST00000437564 KRTAP2-4Q9BYR9 128 aa2.41□□□□□ -2.02
MCF2-205ENST00000437564 KRTAP2-1Q9BYU5 128 aa2.41□□□□□ -2.02
MCF2-205ENST00000437564 FAT3Q8TDW7 4589 aa2.41□□□□□ -2.02
MCF2-205ENST00000437564 HSPG2P98160 4391 aa2.39□□□□□ -2.03
MCF2-205ENST00000437564 FAT2Q9NYQ8 4349 aa2.39□□□□□ -2.03
MCF2-205ENST00000437564 M0R2T5 61 aa2.37□□□□□ -2.03
MCF2-205ENST00000437564 PKHD1P08F94 4074 aa2.37□□□□□ -2.03
MCF2-205ENST00000437564 TNXBP22105 4242 aa2.36□□□□□ -2.03
MCF2-205ENST00000437564 KRTAP6-3Q3LI67 103 aa2.35□□□□□ -2.03
MCF2-205ENST00000437564 STARD9Q9P2P6 4700 aa2.34□□□□□ -2.03
MCF2-205ENST00000437564 DNAH5Q8TE73 4624 aa2.34□□□□□ -2.03
MCF2-205ENST00000437564 KRTAP12-3P60328 96 aa2.34□□□□□ -2.04
MCF2-205ENST00000437564 KRTAP10-5P60370 271 aa2.34□□□□□ -2.04
MCF2-205ENST00000437564 LRP1BQ9NZR2 4599 aa2.33□□□□□ -2.04
MCF2-205ENST00000437564 KRTAP10-4P60372 401 aaPredicted RBP2.32□□□□□ -2.04
MCF2-205ENST00000437564 KRTAP12-4P60329 112 aa2.3□□□□□ -2.04
MCF2-205ENST00000437564 KRTAP4-3Q9BYR4 195 aa2.3□□□□□ -2.04
MCF2-205ENST00000437564 DYNC1H1Q14204 4646 aaKnown RBP2.3□□□□□ -2.04
MCF2-205ENST00000437564 PLECQ15149 4684 aaKnown RBP2.29□□□□□ -2.04
MCF2-205ENST00000437564 LCE3EQ5T5B0 92 aa2.29□□□□□ -2.04
MCF2-205ENST00000437564 SMR3BP02814 79 aaPredicted RBP2.26□□□□□ -2.05
MCF2-205ENST00000437564 KRTAP9-6A8MVA2 160 aa2.24□□□□□ -2.05
MCF2-205ENST00000437564 LPAP08519 4548 aa2.2□□□□□ -2.06
MCF2-205ENST00000437564 OBSCNQ5VST9 7968 aa2.18□□□□□ -2.06
MCF2-205ENST00000437564 FAT1Q14517 4588 aa2.16□□□□□ -2.06
MCF2-205ENST00000437564 SPRR2GQ9BYE4 73 aa2.14□□□□□ -2.07
MCF2-205ENST00000437564 KRTAP19-5Q3LI72 72 aa2.09□□□□□ -2.07
MCF2-205ENST00000437564 MUC17Q685J3 4493 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms