RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 K7ERS5 55 aa5.92□□□□□ -1.46
USP4-205ENST00000431357 KRTAP10-8P60410 259 aa5.9□□□□□ -1.47
USP4-205ENST00000431357 FLG2Q5D862 2391 aaPredicted RBP5.88□□□□□ -1.47
USP4-205ENST00000431357 FAT3Q8TDW7 4589 aa5.88□□□□□ -1.47
USP4-205ENST00000431357 RPL37P61927 97 aaKnown RBP5.87□□□□□ -1.47
USP4-205ENST00000431357 SPINT4Q6UDR6 99 aa5.86□□□□□ -1.47
USP4-205ENST00000431357 NDUFAF8A1L188 74 aa5.85□□□□□ -1.47
USP4-205ENST00000431357 RYR2Q92736 4967 aa5.84□□□□□ -1.47
USP4-205ENST00000431357 KRTAP15-1Q3LI76 137 aa5.83□□□□□ -1.48
USP4-205ENST00000431357 TNXBP22105 4242 aa5.81□□□□□ -1.48
USP4-205ENST00000431357 XP32Q5T750 250 aa5.81□□□□□ -1.48
USP4-205ENST00000431357 Q5VSD8 79 aa5.81□□□□□ -1.48
USP4-205ENST00000431357 KRTAP10-6P60371 365 aaPredicted RBP5.78□□□□□ -1.48
USP4-205ENST00000431357 S4R3F8 94 aa5.78□□□□□ -1.48
USP4-205ENST00000431357 KMT2CQ8NEZ4 4911 aaKnown RBP5.77□□□□□ -1.49
USP4-205ENST00000431357 HSPG2P98160 4391 aa5.75□□□□□ -1.49
USP4-205ENST00000431357 LRP1Q07954 4544 aaKnown RBP5.74□□□□□ -1.49
USP4-205ENST00000431357 LUZP6Q538Z0 58 aa5.72□□□□□ -1.49
USP4-205ENST00000431357 J3QL48 77 aa5.7□□□□□ -1.5
USP4-205ENST00000431357 CRIPTQ9P021 101 aa5.69□□□□□ -1.5
USP4-205ENST00000431357 KRTAP13-4Q3LI77 160 aa5.68□□□□□ -1.5
USP4-205ENST00000431357 SEC61BP60468 96 aaKnown RBP5.67□□□□□ -1.5
USP4-205ENST00000431357 MT1HL1P0DM35 61 aa5.66□□□□□ -1.5
USP4-205ENST00000431357 RYR3Q15413 4870 aa5.66□□□□□ -1.5
USP4-205ENST00000431357 A0A0D9SG42 100 aa5.65□□□□□ -1.51
USP4-205ENST00000431357 DMBT1Q9UGM3 2413 aaPredicted RBP5.64□□□□□ -1.51
USP4-205ENST00000431357 RYR1P21817 5038 aa5.64□□□□□ -1.51
USP4-205ENST00000431357 TPRXLQ17RH7 258 aa5.64□□□□□ -1.51
USP4-205ENST00000431357 KRTAP17-1Q9BYP8 105 aa5.59□□□□□ -1.52
USP4-205ENST00000431357 MYCBP2O75592 4640 aa5.58□□□□□ -1.52
USP4-205ENST00000431357 M0QZ58 72 aa5.55□□□□□ -1.52
USP4-205ENST00000431357 KRTAP12-2P59991 146 aa5.51□□□□□ -1.53
USP4-205ENST00000431357 KRTAP12-1P59990 96 aa5.5□□□□□ -1.53
USP4-205ENST00000431357 KIAA1109Q2LD37 5005 aa5.45□□□□□ -1.54
USP4-205ENST00000431357 EPPK1P58107 5090 aaKnown RBP5.45□□□□□ -1.54
USP4-205ENST00000431357 C10orf95Q9H7T3 257 aa5.44□□□□□ -1.54
USP4-205ENST00000431357 LRP2P98164 4655 aa5.42□□□□□ -1.54
USP4-205ENST00000431357 LPAP08519 4548 aa5.41□□□□□ -1.54
USP4-205ENST00000431357 LCE2BO14633 110 aa5.36□□□□□ -1.55
USP4-205ENST00000431357 R4GN34 69 aa5.36□□□□□ -1.55
USP4-205ENST00000431357 CAMK2N1Q7Z7J9 78 aa5.34□□□□□ -1.55
USP4-205ENST00000431357 KRTAP4-5Q9BYR2 181 aa5.3□□□□□ -1.56
USP4-205ENST00000431357 BIRC6Q9NR09 4857 aa5.29□□□□□ -1.56
USP4-205ENST00000431357 MUC17Q685J3 4493 aa5.28□□□□□ -1.56
USP4-205ENST00000431357 PLAC4Q8WY50 150 aa5.27□□□□□ -1.57
USP4-205ENST00000431357 KRTAP4-1Q9BYQ7 146 aa5.24□□□□□ -1.57
USP4-205ENST00000431357 ABCA13Q86UQ4 5058 aa5.23□□□□□ -1.57
USP4-205ENST00000431357 HERC2O95714 4834 aa5.21□□□□□ -1.58
USP4-205ENST00000431357 LORP23490 312 aaPredicted RBP5.21□□□□□ -1.58
USP4-205ENST00000431357 KRTAP19-2Q3LHN2 52 aa5.19□□□□□ -1.58
USP4-205ENST00000431357 LCE2CQ5TA81 110 aa5.13□□□□□ -1.59
USP4-205ENST00000431357 PP632Q6XCG6 107 aa5.1□□□□□ -1.59
USP4-205ENST00000431357 PRO2289Q9P1D8 64 aa5.08□□□□□ -1.6
USP4-205ENST00000431357 LCE2AQ5TA79 106 aaPredicted RBP5.03□□□□□ -1.6
USP4-205ENST00000431357 PCLOQ9Y6V0 5065 aa5.02□□□□□ -1.61
USP4-205ENST00000431357 FLGP20930 4061 aaPredicted RBP5□□□□□ -1.61
USP4-205ENST00000431357 HERC1Q15751 4861 aa4.99□□□□□ -1.61
USP4-205ENST00000431357 KRTAP23-1A1A580 65 aa4.95□□□□□ -1.62
USP4-205ENST00000431357 TNP1P09430 55 aa4.94□□□□□ -1.62
USP4-205ENST00000431357 INE1O15225 51 aa4.91□□□□□ -1.62
USP4-205ENST00000431357 SPRR5A0A1B0GTR4 108 aa4.87□□□□□ -1.63
USP4-205ENST00000431357 SPRR2GQ9BYE4 73 aa4.84□□□□□ -1.63
USP4-205ENST00000431357 MUC2Q02817 5179 aa4.81□□□□□ -1.64
USP4-205ENST00000431357 HMCN2Q8NDA2 5059 aa4.81□□□□□ -1.64
USP4-205ENST00000431357 KRTAP19-1Q8IUB9 90 aa4.78□□□□□ -1.64
USP4-205ENST00000431357 M0R2T5 61 aa4.75□□□□□ -1.65
USP4-205ENST00000431357 MT1HP80294 61 aa4.72□□□□□ -1.65
USP4-205ENST00000431357 MT2AP02795 61 aa4.67□□□□□ -1.66
USP4-205ENST00000431357 KRTAP10-10P60014 251 aa4.67□□□□□ -1.66
USP4-205ENST00000431357 MT1FP04733 61 aa4.65□□□□□ -1.67
USP4-205ENST00000431357 KRTAP19-8Q3LI54 63 aa4.63□□□□□ -1.67
USP4-205ENST00000431357 FAT4Q6V0I7 4981 aa4.63□□□□□ -1.67
USP4-205ENST00000431357 KRTAP9-8Q9BYQ0 159 aa4.63□□□□□ -1.67
USP4-205ENST00000431357 LCE3AQ5TA76 89 aa4.61□□□□□ -1.67
USP4-205ENST00000431357 UBR4Q5T4S7 5183 aa4.58□□□□□ -1.68
USP4-205ENST00000431357 RNF213Q63HN8 5207 aa4.56□□□□□ -1.68
USP4-205ENST00000431357 KRTAP8-1Q8IUC2 63 aa4.55□□□□□ -1.68
USP4-205ENST00000431357 MT1BP07438 61 aa4.52□□□□□ -1.69
USP4-205ENST00000431357 KRTAP10-5P60370 271 aa4.51□□□□□ -1.69
USP4-205ENST00000431357 MT1XP80297 61 aa4.49□□□□□ -1.69
USP4-205ENST00000431357 KRTAP10-12P60413 245 aa4.45□□□□□ -1.7
USP4-205ENST00000431357 KRTAP9-3Q9BYQ3 159 aa4.44□□□□□ -1.7
USP4-205ENST00000431357 KRTAP12-3P60328 96 aa4.42□□□□□ -1.7
USP4-205ENST00000431357 KRTAP10-7P60409 375 aaPredicted RBP4.35□□□□□ -1.71
USP4-205ENST00000431357 KRTAP19-5Q3LI72 72 aa4.19□□□□□ -1.74
USP4-205ENST00000431357 LCE3CQ5T5A8 94 aa4.16□□□□□ -1.74
USP4-205ENST00000431357 KRTAP19-4Q3LI73 84 aa4.07□□□□□ -1.76
USP4-205ENST00000431357 KRTAP4-8A0A0G2JLE6 195 aa4.04□□□□□ -1.76
USP4-205ENST00000431357 KRTAP4-8Q9BYQ9 185 aa4.04□□□□□ -1.76
USP4-205ENST00000431357 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
USP4-205ENST00000431357 KRTAP9-6A8MVA2 160 aa3.95□□□□□ -1.78
USP4-205ENST00000431357 USH2AO75445 5202 aa3.95□□□□□ -1.78
USP4-205ENST00000431357 LOC100996750A0A140TA64 210 aa3.93□□□□□ -1.78
USP4-205ENST00000431357 KRTAP4-6Q9BYQ5 205 aa3.93□□□□□ -1.78
USP4-205ENST00000431357 KMT2DO14686 5537 aa3.91□□□□□ -1.78
USP4-205ENST00000431357 MT1EP04732 61 aa3.91□□□□□ -1.78
USP4-205ENST00000431357 MT1LQ93083 61 aa3.91□□□□□ -1.78
USP4-205ENST00000431357 KRTAP2-3P0C7H8 128 aa3.9□□□□□ -1.79
USP4-205ENST00000431357 KRTAP2-4Q9BYR9 128 aa3.9□□□□□ -1.79
USP4-205ENST00000431357 KRTAP2-1Q9BYU5 128 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms