RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 DNAH10Q8IVF4 4471 aa5.7□□□□□ -1.5
PTCH1-208ENST00000430669 KRTAP10-10P60014 251 aa5.69□□□□□ -1.5
PTCH1-208ENST00000430669 DNAH2Q9P225 4427 aa5.69□□□□□ -1.5
PTCH1-208ENST00000430669 KRTAP10-4P60372 401 aaPredicted RBP5.65□□□□□ -1.5
PTCH1-208ENST00000430669 KRTAP3-1Q9BYR8 98 aa5.64□□□□□ -1.51
PTCH1-208ENST00000430669 PLECQ15149 4684 aaKnown RBP5.6□□□□□ -1.51
PTCH1-208ENST00000430669 MT1HL1P0DM35 61 aa5.59□□□□□ -1.51
PTCH1-208ENST00000430669 FAT2Q9NYQ8 4349 aa5.58□□□□□ -1.52
PTCH1-208ENST00000430669 STARD9Q9P2P6 4700 aa5.58□□□□□ -1.52
PTCH1-208ENST00000430669 KRTAP12-2P59991 146 aa5.55□□□□□ -1.52
PTCH1-208ENST00000430669 KRTAP12-1P59990 96 aa5.52□□□□□ -1.53
PTCH1-208ENST00000430669 KRTAP13-4Q3LI77 160 aa5.51□□□□□ -1.53
PTCH1-208ENST00000430669 DNAH17Q9UFH2 4485 aa5.51□□□□□ -1.53
PTCH1-208ENST00000430669 DNAH11Q96DT5 4516 aa5.47□□□□□ -1.53
PTCH1-208ENST00000430669 KRTAP10-6P60371 365 aaPredicted RBP5.47□□□□□ -1.53
PTCH1-208ENST00000430669 KRTAP3-3Q9BYR6 98 aa5.39□□□□□ -1.55
PTCH1-208ENST00000430669 DNAH8Q96JB1 4490 aa5.38□□□□□ -1.55
PTCH1-208ENST00000430669 PKHD1P08F94 4074 aa5.33□□□□□ -1.56
PTCH1-208ENST00000430669 KRTAP3-2Q9BYR7 98 aa5.32□□□□□ -1.56
PTCH1-208ENST00000430669 KRTAP4-5Q9BYR2 181 aa5.27□□□□□ -1.57
PTCH1-208ENST00000430669 PKHD1L1Q86WI1 4243 aa5.25□□□□□ -1.57
PTCH1-208ENST00000430669 DNAH5Q8TE73 4624 aa5.25□□□□□ -1.57
PTCH1-208ENST00000430669 LRP1BQ9NZR2 4599 aa5.24□□□□□ -1.57
PTCH1-208ENST00000430669 PKD1P98161 4303 aa5.23□□□□□ -1.57
PTCH1-208ENST00000430669 KRTAP23-1A1A580 65 aa5.19□□□□□ -1.58
PTCH1-208ENST00000430669 TNXBP22105 4242 aa5.07□□□□□ -1.6
PTCH1-208ENST00000430669 KRTAP15-1Q3LI76 137 aa5.04□□□□□ -1.6
PTCH1-208ENST00000430669 KRTAP10-12P60413 245 aa5.04□□□□□ -1.6
PTCH1-208ENST00000430669 DYNC1H1Q14204 4646 aaKnown RBP5.03□□□□□ -1.6
PTCH1-208ENST00000430669 APOBP04114 4563 aaKnown RBP4.99□□□□□ -1.61
PTCH1-208ENST00000430669 SACSQ9NZJ4 4579 aa4.98□□□□□ -1.61
PTCH1-208ENST00000430669 HSPG2P98160 4391 aa4.98□□□□□ -1.61
PTCH1-208ENST00000430669 CRCT1Q9UGL9 99 aa4.94□□□□□ -1.62
PTCH1-208ENST00000430669 FLGP20930 4061 aaPredicted RBP4.91□□□□□ -1.62
PTCH1-208ENST00000430669 DNHD1Q96M86 4753 aa4.88□□□□□ -1.63
PTCH1-208ENST00000430669 KRTAP4-1Q9BYQ7 146 aa4.88□□□□□ -1.63
PTCH1-208ENST00000430669 SPRR2GQ9BYE4 73 aa4.87□□□□□ -1.63
PTCH1-208ENST00000430669 FAT1Q14517 4588 aa4.86□□□□□ -1.63
PTCH1-208ENST00000430669 LORP23490 312 aaPredicted RBP4.85□□□□□ -1.63
PTCH1-208ENST00000430669 MT1HP80294 61 aa4.85□□□□□ -1.63
PTCH1-208ENST00000430669 KRTAP12-3P60328 96 aa4.84□□□□□ -1.63
PTCH1-208ENST00000430669 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
PTCH1-208ENST00000430669 INE1O15225 51 aa4.78□□□□□ -1.64
PTCH1-208ENST00000430669 FAT3Q8TDW7 4589 aa4.74□□□□□ -1.65
PTCH1-208ENST00000430669 LRP1Q07954 4544 aaKnown RBP4.72□□□□□ -1.65
PTCH1-208ENST00000430669 MT2AP02795 61 aa4.7□□□□□ -1.66
PTCH1-208ENST00000430669 HYDINQ4G0P3 5121 aa4.66□□□□□ -1.66
PTCH1-208ENST00000430669 KRTAP17-1Q9BYP8 105 aa4.62□□□□□ -1.67
PTCH1-208ENST00000430669 KRTAP19-4Q3LI73 84 aa4.6□□□□□ -1.67
PTCH1-208ENST00000430669 MT1FP04733 61 aa4.6□□□□□ -1.67
PTCH1-208ENST00000430669 KRTAP8-1Q8IUC2 63 aa4.59□□□□□ -1.67
PTCH1-208ENST00000430669 MYCBP2O75592 4640 aa4.59□□□□□ -1.68
PTCH1-208ENST00000430669 KRTAP19-8Q3LI54 63 aa4.53□□□□□ -1.68
PTCH1-208ENST00000430669 LPAP08519 4548 aa4.49□□□□□ -1.69
PTCH1-208ENST00000430669 RYR3Q15413 4870 aa4.48□□□□□ -1.69
PTCH1-208ENST00000430669 MUC17Q685J3 4493 aa4.47□□□□□ -1.69
PTCH1-208ENST00000430669 KRTAP10-5P60370 271 aa4.47□□□□□ -1.69
PTCH1-208ENST00000430669 KRTAP19-1Q8IUB9 90 aa4.46□□□□□ -1.7
PTCH1-208ENST00000430669 RYR1P21817 5038 aa4.44□□□□□ -1.7
PTCH1-208ENST00000430669 RYR2Q92736 4967 aa4.42□□□□□ -1.7
PTCH1-208ENST00000430669 LRP2P98164 4655 aa4.4□□□□□ -1.7
PTCH1-208ENST00000430669 KRTAP9-8Q9BYQ0 159 aa4.39□□□□□ -1.71
PTCH1-208ENST00000430669 KRTAP19-5Q3LI72 72 aa4.37□□□□□ -1.71
PTCH1-208ENST00000430669 LCE3CQ5T5A8 94 aa4.37□□□□□ -1.71
PTCH1-208ENST00000430669 LCE2CQ5TA81 110 aa4.36□□□□□ -1.71
PTCH1-208ENST00000430669 KRTAP10-7P60409 375 aaPredicted RBP4.32□□□□□ -1.72
PTCH1-208ENST00000430669 MT1XP80297 61 aa4.32□□□□□ -1.72
PTCH1-208ENST00000430669 KMT2CQ8NEZ4 4911 aaKnown RBP4.28□□□□□ -1.72
PTCH1-208ENST00000430669 KRTAP19-2Q3LHN2 52 aa4.26□□□□□ -1.73
PTCH1-208ENST00000430669 KRTAP9-3Q9BYQ3 159 aa4.26□□□□□ -1.73
PTCH1-208ENST00000430669 MT1BP07438 61 aa4.26□□□□□ -1.73
PTCH1-208ENST00000430669 SPRR2FQ96RM1 72 aa4.24□□□□□ -1.73
PTCH1-208ENST00000430669 SPRR5A0A1B0GTR4 108 aa4.12□□□□□ -1.75
PTCH1-208ENST00000430669 KIAA1109Q2LD37 5005 aa4.11□□□□□ -1.75
PTCH1-208ENST00000430669 HERC2O95714 4834 aa4.11□□□□□ -1.75
PTCH1-208ENST00000430669 SPRR2EP22531 72 aa4.06□□□□□ -1.76
PTCH1-208ENST00000430669 SPRR2BP35325 72 aa4.06□□□□□ -1.76
PTCH1-208ENST00000430669 SPRR2AP35326 72 aa4.06□□□□□ -1.76
PTCH1-208ENST00000430669 MT1GP13640 62 aa4.01□□□□□ -1.77
PTCH1-208ENST00000430669 LCE2BO14633 110 aa3.99□□□□□ -1.77
PTCH1-208ENST00000430669 SPRR2DP22532 72 aa3.95□□□□□ -1.78
PTCH1-208ENST00000430669 KRTAP19-6Q3LI70 58 aa3.94□□□□□ -1.78
PTCH1-208ENST00000430669 BIRC6Q9NR09 4857 aa3.93□□□□□ -1.78
PTCH1-208ENST00000430669 KRTAP12-4P60329 112 aa3.92□□□□□ -1.78
PTCH1-208ENST00000430669 KRTAP4-8A0A0G2JLE6 195 aa3.91□□□□□ -1.78
PTCH1-208ENST00000430669 KRTAP4-8Q9BYQ9 185 aa3.91□□□□□ -1.78
PTCH1-208ENST00000430669 HERC1Q15751 4861 aa3.9□□□□□ -1.78
PTCH1-208ENST00000430669 LCE2AQ5TA79 106 aaPredicted RBP3.89□□□□□ -1.79
PTCH1-208ENST00000430669 KRTAP19-3Q7Z4W3 81 aa3.89□□□□□ -1.79
PTCH1-208ENST00000430669 MT1LQ93083 61 aa3.89□□□□□ -1.79
PTCH1-208ENST00000430669 LCE2DQ5TA82 110 aaPredicted RBP3.88□□□□□ -1.79
PTCH1-208ENST00000430669 MT1EP04732 61 aa3.88□□□□□ -1.79
PTCH1-208ENST00000430669 PCLOQ9Y6V0 5065 aa3.87□□□□□ -1.79
PTCH1-208ENST00000430669 LCE3BQ5TA77 95 aa3.79□□□□□ -1.8
PTCH1-208ENST00000430669 EPPK1P58107 5090 aaKnown RBP3.77□□□□□ -1.81
PTCH1-208ENST00000430669 KRTAP9-2Q9BYQ4 174 aa3.72□□□□□ -1.81
PTCH1-208ENST00000430669 HMCN2Q8NDA2 5059 aa3.71□□□□□ -1.82
PTCH1-208ENST00000430669 MT1MQ8N339 61 aa3.7□□□□□ -1.82
PTCH1-208ENST00000430669 ABCA13Q86UQ4 5058 aa3.65□□□□□ -1.83
PTCH1-208ENST00000430669 LCE3DQ9BYE3 92 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms