RNA–Protein interactions for RNA: ENST00000430328.6

RIF1-204, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,992 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-204ENST00000430328 KRTAP10-4P60372 401 aaPredicted RBP6.33□□□□□ -1.4
RIF1-204ENST00000430328 CSMD2Q7Z408 3487 aa6.31□□□□□ -1.4
RIF1-204ENST00000430328 SPRR2FQ96RM1 72 aa6.24□□□□□ -1.41
RIF1-204ENST00000430328 KRTAP19-5Q3LI72 72 aa6.23□□□□□ -1.41
RIF1-204ENST00000430328 KRTAP19-4Q3LI73 84 aa6.21□□□□□ -1.42
RIF1-204ENST00000430328 KRTAP4-5Q9BYR2 181 aa6.15□□□□□ -1.43
RIF1-204ENST00000430328 KRTAP12-4P60329 112 aa6.1□□□□□ -1.43
RIF1-204ENST00000430328 AKAP9Q99996 3911 aa6.09□□□□□ -1.43
RIF1-204ENST00000430328 SPRR2GQ9BYE4 73 aa6.09□□□□□ -1.43
RIF1-204ENST00000430328 LCE3BQ5TA77 95 aa6.08□□□□□ -1.44
RIF1-204ENST00000430328 ANK3Q12955 4377 aaKnown RBP6.05□□□□□ -1.44
RIF1-204ENST00000430328 DNAH2Q9P225 4427 aa6□□□□□ -1.45
RIF1-204ENST00000430328 BSNQ9UPA5 3926 aa6□□□□□ -1.45
RIF1-204ENST00000430328 MT1HP80294 61 aa5.94□□□□□ -1.46
RIF1-204ENST00000430328 HUWE1Q7Z6Z7 4374 aaKnown RBP5.92□□□□□ -1.46
RIF1-204ENST00000430328 MT2AP02795 61 aa5.87□□□□□ -1.47
RIF1-204ENST00000430328 SPRR2EP22531 72 aa5.84□□□□□ -1.48
RIF1-204ENST00000430328 SPRR2BP35325 72 aa5.84□□□□□ -1.48
RIF1-204ENST00000430328 SPRR2AP35326 72 aa5.84□□□□□ -1.48
RIF1-204ENST00000430328 DNAH1Q9P2D7 4330 aa5.83□□□□□ -1.48
RIF1-204ENST00000430328 LCE3DQ9BYE3 92 aa5.82□□□□□ -1.48
RIF1-204ENST00000430328 KRTAP4-1Q9BYQ7 146 aa5.73□□□□□ -1.49
RIF1-204ENST00000430328 LCE3EQ5T5B0 92 aa5.72□□□□□ -1.49
RIF1-204ENST00000430328 MT1FP04733 61 aa5.71□□□□□ -1.5
RIF1-204ENST00000430328 MT1GP13640 62 aa5.71□□□□□ -1.5
RIF1-204ENST00000430328 LCE2BO14633 110 aa5.69□□□□□ -1.5
RIF1-204ENST00000430328 CMYA5Q8N3K9 4069 aa5.66□□□□□ -1.5
RIF1-204ENST00000430328 ZNF469Q96JG9 3925 aaPredicted RBP5.66□□□□□ -1.5
RIF1-204ENST00000430328 LYSTQ99698 3801 aa5.66□□□□□ -1.5
RIF1-204ENST00000430328 SPRR2DP22532 72 aa5.66□□□□□ -1.5
RIF1-204ENST00000430328 MT3P25713 68 aa5.66□□□□□ -1.5
RIF1-204ENST00000430328 DNAH3Q8TD57 4116 aa5.6□□□□□ -1.51
RIF1-204ENST00000430328 VPS13BQ7Z7G8 4022 aa5.59□□□□□ -1.51
RIF1-204ENST00000430328 DNAH8Q96JB1 4490 aa5.57□□□□□ -1.52
RIF1-204ENST00000430328 KMT2AQ03164 3969 aa5.57□□□□□ -1.52
RIF1-204ENST00000430328 DNAH7Q8WXX0 4024 aa5.57□□□□□ -1.52
RIF1-204ENST00000430328 FRAS1Q86XX4 4008 aa5.56□□□□□ -1.52
RIF1-204ENST00000430328 ANK2Q01484 3957 aa5.54□□□□□ -1.52
RIF1-204ENST00000430328 DNAH6Q9C0G6 4158 aa5.53□□□□□ -1.52
RIF1-204ENST00000430328 DNAH17Q9UFH2 4485 aa5.46□□□□□ -1.53
RIF1-204ENST00000430328 DNAH10Q8IVF4 4471 aa5.43□□□□□ -1.54
RIF1-204ENST00000430328 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
RIF1-204ENST00000430328 PRM1P04553 51 aa5.4□□□□□ -1.55
RIF1-204ENST00000430328 KRTAP19-8Q3LI54 63 aa5.4□□□□□ -1.55
RIF1-204ENST00000430328 LCE2CQ5TA81 110 aa5.37□□□□□ -1.55
RIF1-204ENST00000430328 DNAH9Q9NYC9 4486 aa5.36□□□□□ -1.55
RIF1-204ENST00000430328 MT1XP80297 61 aa5.35□□□□□ -1.55
RIF1-204ENST00000430328 HECTD4Q9Y4D8 3996 aa5.34□□□□□ -1.56
RIF1-204ENST00000430328 FAT2Q9NYQ8 4349 aa5.29□□□□□ -1.56
RIF1-204ENST00000430328 FLGP20930 4061 aaPredicted RBP5.29□□□□□ -1.56
RIF1-204ENST00000430328 KRTAP19-1Q8IUB9 90 aa5.29□□□□□ -1.56
RIF1-204ENST00000430328 LCE2DQ5TA82 110 aaPredicted RBP5.25□□□□□ -1.57
RIF1-204ENST00000430328 FAT1Q14517 4588 aa5.25□□□□□ -1.57
RIF1-204ENST00000430328 DNAH11Q96DT5 4516 aa5.25□□□□□ -1.57
RIF1-204ENST00000430328 MT1LQ93083 61 aa5.21□□□□□ -1.58
RIF1-204ENST00000430328 PLECQ15149 4684 aaKnown RBP5.2□□□□□ -1.58
RIF1-204ENST00000430328 KRTAP4-8A0A0G2JLE6 195 aa5.19□□□□□ -1.58
RIF1-204ENST00000430328 KRTAP4-8Q9BYQ9 185 aa5.19□□□□□ -1.58
RIF1-204ENST00000430328 LRP1Q07954 4544 aaKnown RBP5.17□□□□□ -1.58
RIF1-204ENST00000430328 LCE1BQ5T7P3 118 aa5.16□□□□□ -1.58
RIF1-204ENST00000430328 DNAH5Q8TE73 4624 aa5.14□□□□□ -1.59
RIF1-204ENST00000430328 KRTAP19-3Q7Z4W3 81 aa5.13□□□□□ -1.59
RIF1-204ENST00000430328 VPS13DQ5THJ4 4388 aa5.09□□□□□ -1.59
RIF1-204ENST00000430328 DYNC2H1Q8NCM8 4307 aaKnown RBP5.09□□□□□ -1.59
RIF1-204ENST00000430328 LCE1DQ5T752 114 aa5.09□□□□□ -1.59
RIF1-204ENST00000430328 MT1BP07438 61 aa5.06□□□□□ -1.6
RIF1-204ENST00000430328 MT4P47944 62 aa5.04□□□□□ -1.6
RIF1-204ENST00000430328 PRKDCP78527 4128 aaKnown RBP5.01□□□□□ -1.61
RIF1-204ENST00000430328 STARD9Q9P2P6 4700 aa4.97□□□□□ -1.61
RIF1-204ENST00000430328 KRTAP4-7Q9BYR0 210 aa4.95□□□□□ -1.62
RIF1-204ENST00000430328 DYNC1H1Q14204 4646 aaKnown RBP4.94□□□□□ -1.62
RIF1-204ENST00000430328 LRP1BQ9NZR2 4599 aa4.94□□□□□ -1.62
RIF1-204ENST00000430328 APOBP04114 4563 aaKnown RBP4.93□□□□□ -1.62
RIF1-204ENST00000430328 SACSQ9NZJ4 4579 aa4.92□□□□□ -1.62
RIF1-204ENST00000430328 KRTAP9-8Q9BYQ0 159 aa4.91□□□□□ -1.62
RIF1-204ENST00000430328 MT1EP04732 61 aa4.9□□□□□ -1.63
RIF1-204ENST00000430328 LCE5AQ5TCM9 118 aa4.83□□□□□ -1.64
RIF1-204ENST00000430328 FAT3Q8TDW7 4589 aa4.81□□□□□ -1.64
RIF1-204ENST00000430328 KRTAP9-3Q9BYQ3 159 aa4.8□□□□□ -1.64
RIF1-204ENST00000430328 MT1MQ8N339 61 aa4.8□□□□□ -1.64
RIF1-204ENST00000430328 LOC100996750A0A140TA64 210 aa4.77□□□□□ -1.65
RIF1-204ENST00000430328 DNHD1Q96M86 4753 aa4.76□□□□□ -1.65
RIF1-204ENST00000430328 PKD1P98161 4303 aa4.75□□□□□ -1.65
RIF1-204ENST00000430328 PKHD1L1Q86WI1 4243 aa4.69□□□□□ -1.66
RIF1-204ENST00000430328 RYR1P21817 5038 aa4.67□□□□□ -1.66
RIF1-204ENST00000430328 MYCBP2O75592 4640 aa4.67□□□□□ -1.66
RIF1-204ENST00000430328 KRTAP17-1Q9BYP8 105 aa4.66□□□□□ -1.66
RIF1-204ENST00000430328 PKHD1P08F94 4074 aa4.64□□□□□ -1.67
RIF1-204ENST00000430328 LCE1CQ5T751 118 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 LCE1EQ5T753 118 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 LCE1FQ5T754 118 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 LCE1AQ5T7P2 110 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 KRTAP2-3P0C7H8 128 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 KRTAP2-4Q9BYR9 128 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 KRTAP2-1Q9BYU5 128 aa4.6□□□□□ -1.67
RIF1-204ENST00000430328 KRTAP4-9Q9BYQ8 210 aa4.58□□□□□ -1.68
RIF1-204ENST00000430328 KRTAP4-3Q9BYR4 195 aa4.57□□□□□ -1.68
RIF1-204ENST00000430328 MT1AP04731 61 aa4.54□□□□□ -1.68
RIF1-204ENST00000430328 KRTAP6-2Q3LI66 62 aa4.53□□□□□ -1.68
RIF1-204ENST00000430328 HSPG2P98160 4391 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms