RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 M0R143 59 aa1.34□□□□□ -2.2
CCDC88A-205ENST00000426576 SNRPEP62304 92 aaKnown RBP1.34□□□□□ -2.2
CCDC88A-205ENST00000426576 C9orf118A6NHY6 69 aa1.33□□□□□ -2.2
CCDC88A-205ENST00000426576 C11orf86A6NJI1 115 aa1.33□□□□□ -2.2
CCDC88A-205ENST00000426576 TMEM254Q8TBM7 123 aa1.33□□□□□ -2.2
CCDC88A-205ENST00000426576 LINC00308Q8TCZ7 52 aa1.33□□□□□ -2.2
CCDC88A-205ENST00000426576 A0A0A0MQY5 61 aa1.33□□□□□ -2.2
CCDC88A-205ENST00000426576 FAM167A-AS1Q96KT0 104 aa1.33□□□□□ -2.2
CCDC88A-205ENST00000426576 TOMM6Q96B49 74 aa1.32□□□□□ -2.2
CCDC88A-205ENST00000426576 H0Y9P7 68 aa1.32□□□□□ -2.2
CCDC88A-205ENST00000426576 PMCHL1Q16048 86 aa1.31□□□□□ -2.2
CCDC88A-205ENST00000426576 ELOF1P60002 83 aaKnown RBP1.31□□□□□ -2.2
CCDC88A-205ENST00000426576 KRTAP16-1A8MUX0 517 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 KRTAP1-4P0C5Y4 121 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 KRTAP19-4Q3LI73 84 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 BRK1Q8WUW1 75 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 C10orf95Q9H7T3 257 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 MT1HP80294 61 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 SMIM11BQ8TCY0 68 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 PRO1854Q9UHT4 67 aa1.3□□□□□ -2.2
CCDC88A-205ENST00000426576 MDN1Q9NU22 5596 aa1.29□□□□□ -2.2
CCDC88A-205ENST00000426576 ADCYAP1P18509 176 aa1.29□□□□□ -2.2
CCDC88A-205ENST00000426576 SVBPQ8N300 66 aa1.29□□□□□ -2.2
CCDC88A-205ENST00000426576 TRBV7-4A0A0J9YYF1 115 aa1.29□□□□□ -2.2
CCDC88A-205ENST00000426576 HSD52Q0P140 79 aa1.29□□□□□ -2.2
CCDC88A-205ENST00000426576 A0A1B0GU69 56 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 LINC01545Q5VT33 79 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 CYSTM1Q9H1C7 97 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 MUC17Q685J3 4493 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 COX8CQ7Z4L0 72 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 A0A0B4J2C4 111 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 KRTAP19-6Q3LI70 58 aa1.28□□□□□ -2.2
CCDC88A-205ENST00000426576 SRP19P09132 144 aaKnown RBP1.28□□□□□ -2.21
CCDC88A-205ENST00000426576 UQCR10Q9UDW1 63 aa1.28□□□□□ -2.21
CCDC88A-205ENST00000426576 ATOH7Q8N100 152 aa1.27□□□□□ -2.21
CCDC88A-205ENST00000426576 KRTAP23-1A1A580 65 aa1.27□□□□□ -2.21
CCDC88A-205ENST00000426576 MMP24-AS1A0A0U1RRL7 71 aa1.27□□□□□ -2.21
CCDC88A-205ENST00000426576 KRTAP5-1Q6L8H4 278 aa1.26□□□□□ -2.21
CCDC88A-205ENST00000426576 LINC00310P59036 64 aa1.26□□□□□ -2.21
CCDC88A-205ENST00000426576 LUZP6Q538Z0 58 aa1.26□□□□□ -2.21
CCDC88A-205ENST00000426576 KLK9Q2XQG4 91 aa1.26□□□□□ -2.21
CCDC88A-205ENST00000426576 KRTAP25-1Q3LHN0 102 aa1.25□□□□□ -2.21
CCDC88A-205ENST00000426576 H2BFSP57053 126 aa1.25□□□□□ -2.21
CCDC88A-205ENST00000426576 MUC2Q02817 5179 aa1.25□□□□□ -2.21
CCDC88A-205ENST00000426576 KRTAP26-1Q6PEX3 210 aa1.24□□□□□ -2.21
CCDC88A-205ENST00000426576 CRIP1P50238 77 aa1.24□□□□□ -2.21
CCDC88A-205ENST00000426576 FCGBPQ9Y6R7 5405 aaPredicted RBP1.24□□□□□ -2.21
CCDC88A-205ENST00000426576 A0A1B0GW54 56 aa1.24□□□□□ -2.21
CCDC88A-205ENST00000426576 UQCRQO14949 82 aa1.23□□□□□ -2.21
CCDC88A-205ENST00000426576 E9PLD3 99 aa1.22□□□□□ -2.21
CCDC88A-205ENST00000426576 SNURFQ9Y675 71 aa1.22□□□□□ -2.21
CCDC88A-205ENST00000426576 LOC105371267A0A1B0GV96 52 aa1.21□□□□□ -2.22
CCDC88A-205ENST00000426576 TAX1BP3O14907 124 aa1.21□□□□□ -2.22
CCDC88A-205ENST00000426576 LRP2P98164 4655 aa1.21□□□□□ -2.22
CCDC88A-205ENST00000426576 V9GYY9 64 aa1.21□□□□□ -2.22
CCDC88A-205ENST00000426576 AHNAKQ09666 5890 aaKnown RBP1.2□□□□□ -2.22
CCDC88A-205ENST00000426576 URB1-AS1Q96HZ7 61 aa1.2□□□□□ -2.22
CCDC88A-205ENST00000426576 A0A1B0GU33 70 aa1.19□□□□□ -2.22
CCDC88A-205ENST00000426576 AHNAK2Q8IVF2 5795 aa1.19□□□□□ -2.22
CCDC88A-205ENST00000426576 IGIPA6NJ69 53 aa1.19□□□□□ -2.22
CCDC88A-205ENST00000426576 CDC42SE1Q9NRR8 79 aa1.19□□□□□ -2.22
CCDC88A-205ENST00000426576 MT2AP02795 61 aa1.19□□□□□ -2.22
CCDC88A-205ENST00000426576 FAT4Q6V0I7 4981 aa1.19□□□□□ -2.22
CCDC88A-205ENST00000426576 RNF213Q63HN8 5207 aa1.18□□□□□ -2.22
CCDC88A-205ENST00000426576 KRTAP10-12P60413 245 aa1.18□□□□□ -2.22
CCDC88A-205ENST00000426576 SMIM20Q8N5G0 67 aa1.18□□□□□ -2.22
CCDC88A-205ENST00000426576 DMAC1Q96GE9 116 aa1.18□□□□□ -2.22
CCDC88A-205ENST00000426576 C14orf144Q96I85 54 aa1.17□□□□□ -2.22
CCDC88A-205ENST00000426576 SPATA8Q6RVD6 105 aa1.17□□□□□ -2.22
CCDC88A-205ENST00000426576 CNFNQ9BYD5 112 aa1.17□□□□□ -2.22
CCDC88A-205ENST00000426576 KRTAP15-1Q3LI76 137 aa1.17□□□□□ -2.22
CCDC88A-205ENST00000426576 HIST3H2BBQ8N257 126 aa1.16□□□□□ -2.22
CCDC88A-205ENST00000426576 C18orf32Q8TCD1 76 aa1.16□□□□□ -2.22
CCDC88A-205ENST00000426576 KRTAP5-4Q6L8H1 288 aa1.16□□□□□ -2.22
CCDC88A-205ENST00000426576 A6NED7 52 aa1.16□□□□□ -2.22
CCDC88A-205ENST00000426576 ETDBQ3ZM63 59 aa1.16□□□□□ -2.22
CCDC88A-205ENST00000426576 SPRR1AP35321 89 aa1.15□□□□□ -2.22
CCDC88A-205ENST00000426576 MUC19Q7Z5P9 8384 aa1.15□□□□□ -2.23
CCDC88A-205ENST00000426576 LCE1FQ5T754 118 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BKO60814 126 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BCP62807 126 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 LCE1CQ5T751 118 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 LCE1EQ5T753 118 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 HMCN2Q8NDA2 5059 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 H3BPC8 53 aa1.14□□□□□ -2.23
CCDC88A-205ENST00000426576 ATP5EP2Q5VTU8 51 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 K7ERU9 68 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 UQCR11O14957 56 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BJP06899 126 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BOP23527 126 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST1H2BBP33778 126 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 HIST2H2BEQ16778 126 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 TTTY13Q9BZ97 58 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 PRO0461Q9UI25 63 aa1.13□□□□□ -2.23
CCDC88A-205ENST00000426576 MT1FP04733 61 aa1.12□□□□□ -2.23
CCDC88A-205ENST00000426576 PRO0628Q9UI54 55 aa1.12□□□□□ -2.23
CCDC88A-205ENST00000426576 KRTAP10-5P60370 271 aa1.12□□□□□ -2.23
CCDC88A-205ENST00000426576 FAM240AA0A1B0GVK7 77 aa1.12□□□□□ -2.23
CCDC88A-205ENST00000426576 H3BT86 120 aa1.12□□□□□ -2.23
CCDC88A-205ENST00000426576 KRTAP4-4Q9BYR3 166 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms