RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 PLECQ15149 4684 aaKnown RBP7.02□□□□□ -1.29
PHRF1-203ENST00000416188 DNAH1Q9P2D7 4330 aa6.97□□□□□ -1.29
PHRF1-203ENST00000416188 CSMD3Q7Z407 3707 aa6.93□□□□□ -1.3
PHRF1-203ENST00000416188 DNAH10Q8IVF4 4471 aa6.87□□□□□ -1.31
PHRF1-203ENST00000416188 DYNC1H1Q14204 4646 aaKnown RBP6.86□□□□□ -1.31
PHRF1-203ENST00000416188 RYR1P21817 5038 aa6.85□□□□□ -1.31
PHRF1-203ENST00000416188 KRTAP10-12P60413 245 aa6.83□□□□□ -1.32
PHRF1-203ENST00000416188 VPS13DQ5THJ4 4388 aa6.8□□□□□ -1.32
PHRF1-203ENST00000416188 PRKDCP78527 4128 aaKnown RBP6.76□□□□□ -1.33
PHRF1-203ENST00000416188 KRTAP4-1Q9BYQ7 146 aa6.76□□□□□ -1.33
PHRF1-203ENST00000416188 LRP1BQ9NZR2 4599 aa6.75□□□□□ -1.33
PHRF1-203ENST00000416188 CRCT1Q9UGL9 99 aa6.75□□□□□ -1.33
PHRF1-203ENST00000416188 STARD9Q9P2P6 4700 aa6.74□□□□□ -1.33
PHRF1-203ENST00000416188 MT1HP80294 61 aa6.72□□□□□ -1.33
PHRF1-203ENST00000416188 FAT1Q14517 4588 aa6.71□□□□□ -1.34
PHRF1-203ENST00000416188 ANK2Q01484 3957 aa6.69□□□□□ -1.34
PHRF1-203ENST00000416188 LORP23490 312 aaPredicted RBP6.67□□□□□ -1.34
PHRF1-203ENST00000416188 KRTAP12-3P60328 96 aa6.67□□□□□ -1.34
PHRF1-203ENST00000416188 DNAH17Q9UFH2 4485 aa6.66□□□□□ -1.34
PHRF1-203ENST00000416188 FAT2Q9NYQ8 4349 aa6.62□□□□□ -1.35
PHRF1-203ENST00000416188 KIAA1109Q2LD37 5005 aa6.62□□□□□ -1.35
PHRF1-203ENST00000416188 LCE3AQ5TA76 89 aa6.6□□□□□ -1.35
PHRF1-203ENST00000416188 RYR3Q15413 4870 aa6.58□□□□□ -1.36
PHRF1-203ENST00000416188 KRTAP8-1Q8IUC2 63 aa6.57□□□□□ -1.36
PHRF1-203ENST00000416188 INE1O15225 51 aa6.56□□□□□ -1.36
PHRF1-203ENST00000416188 SACSQ9NZJ4 4579 aa6.55□□□□□ -1.36
PHRF1-203ENST00000416188 MT2AP02795 61 aa6.54□□□□□ -1.36
PHRF1-203ENST00000416188 DYNC2H1Q8NCM8 4307 aaKnown RBP6.52□□□□□ -1.37
PHRF1-203ENST00000416188 KRTAP17-1Q9BYP8 105 aa6.52□□□□□ -1.37
PHRF1-203ENST00000416188 KRTAP23-1A1A580 65 aa6.49□□□□□ -1.37
PHRF1-203ENST00000416188 DNAH2Q9P225 4427 aa6.49□□□□□ -1.37
PHRF1-203ENST00000416188 BIRC6Q9NR09 4857 aa6.47□□□□□ -1.37
PHRF1-203ENST00000416188 MT1FP04733 61 aa6.4□□□□□ -1.38
PHRF1-203ENST00000416188 KMT2AQ03164 3969 aa6.38□□□□□ -1.39
PHRF1-203ENST00000416188 RYR2Q92736 4967 aa6.37□□□□□ -1.39
PHRF1-203ENST00000416188 DNAH3Q8TD57 4116 aa6.36□□□□□ -1.39
PHRF1-203ENST00000416188 VPS13BQ7Z7G8 4022 aa6.35□□□□□ -1.39
PHRF1-203ENST00000416188 HERC2O95714 4834 aa6.34□□□□□ -1.39
PHRF1-203ENST00000416188 APOBP04114 4563 aaKnown RBP6.32□□□□□ -1.4
PHRF1-203ENST00000416188 LYSTQ99698 3801 aa6.3□□□□□ -1.4
PHRF1-203ENST00000416188 SPRR2GQ9BYE4 73 aa6.29□□□□□ -1.4
PHRF1-203ENST00000416188 DNAH8Q96JB1 4490 aa6.28□□□□□ -1.4
PHRF1-203ENST00000416188 SPRR2FQ96RM1 72 aa6.23□□□□□ -1.41
PHRF1-203ENST00000416188 KRTAP10-5P60370 271 aa6.22□□□□□ -1.41
PHRF1-203ENST00000416188 DNAH6Q9C0G6 4158 aa6.2□□□□□ -1.42
PHRF1-203ENST00000416188 CMYA5Q8N3K9 4069 aa6.18□□□□□ -1.42
PHRF1-203ENST00000416188 FAT3Q8TDW7 4589 aa6.17□□□□□ -1.42
PHRF1-203ENST00000416188 MYCBP2O75592 4640 aa6.14□□□□□ -1.43
PHRF1-203ENST00000416188 PCLOQ9Y6V0 5065 aa6.13□□□□□ -1.43
PHRF1-203ENST00000416188 LRP1Q07954 4544 aaKnown RBP6.13□□□□□ -1.43
PHRF1-203ENST00000416188 HYDINQ4G0P3 5121 aa6.05□□□□□ -1.44
PHRF1-203ENST00000416188 HSPG2P98160 4391 aa6.04□□□□□ -1.44
PHRF1-203ENST00000416188 DNAH7Q8WXX0 4024 aa6.02□□□□□ -1.45
PHRF1-203ENST00000416188 HERC1Q15751 4861 aa6.02□□□□□ -1.45
PHRF1-203ENST00000416188 KRTAP10-7P60409 375 aaPredicted RBP5.98□□□□□ -1.45
PHRF1-203ENST00000416188 KRTAP19-5Q3LI72 72 aa5.93□□□□□ -1.46
PHRF1-203ENST00000416188 SPRR2EP22531 72 aa5.92□□□□□ -1.46
PHRF1-203ENST00000416188 SPRR2BP35325 72 aa5.92□□□□□ -1.46
PHRF1-203ENST00000416188 SPRR2AP35326 72 aa5.92□□□□□ -1.46
PHRF1-203ENST00000416188 KRTAP19-8Q3LI54 63 aa5.92□□□□□ -1.46
PHRF1-203ENST00000416188 KRTAP19-1Q8IUB9 90 aa5.92□□□□□ -1.46
PHRF1-203ENST00000416188 KRTAP9-8Q9BYQ0 159 aa5.91□□□□□ -1.46
PHRF1-203ENST00000416188 KMT2CQ8NEZ4 4911 aaKnown RBP5.91□□□□□ -1.46
PHRF1-203ENST00000416188 LCE2CQ5TA81 110 aa5.9□□□□□ -1.47
PHRF1-203ENST00000416188 PKD1P98161 4303 aa5.88□□□□□ -1.47
PHRF1-203ENST00000416188 PKHD1L1Q86WI1 4243 aa5.87□□□□□ -1.47
PHRF1-203ENST00000416188 LRP2P98164 4655 aa5.85□□□□□ -1.47
PHRF1-203ENST00000416188 HECTD4Q9Y4D8 3996 aa5.82□□□□□ -1.48
PHRF1-203ENST00000416188 PKHD1P08F94 4074 aa5.81□□□□□ -1.48
PHRF1-203ENST00000416188 LCE3CQ5T5A8 94 aa5.8□□□□□ -1.48
PHRF1-203ENST00000416188 EPPK1P58107 5090 aaKnown RBP5.8□□□□□ -1.48
PHRF1-203ENST00000416188 KRTAP9-3Q9BYQ3 159 aa5.79□□□□□ -1.48
PHRF1-203ENST00000416188 MT1BP07438 61 aa5.77□□□□□ -1.49
PHRF1-203ENST00000416188 FRAS1Q86XX4 4008 aa5.77□□□□□ -1.49
PHRF1-203ENST00000416188 SPRR2DP22532 72 aa5.74□□□□□ -1.49
PHRF1-203ENST00000416188 KRTAP9-2Q9BYQ4 174 aa5.74□□□□□ -1.49
PHRF1-203ENST00000416188 ABCA13Q86UQ4 5058 aa5.73□□□□□ -1.49
PHRF1-203ENST00000416188 MT1XP80297 61 aa5.71□□□□□ -1.5
PHRF1-203ENST00000416188 LCE2BO14633 110 aa5.65□□□□□ -1.51
PHRF1-203ENST00000416188 LPAP08519 4548 aa5.63□□□□□ -1.51
PHRF1-203ENST00000416188 KRTAP19-2Q3LHN2 52 aa5.61□□□□□ -1.51
PHRF1-203ENST00000416188 KRTAP19-4Q3LI73 84 aa5.6□□□□□ -1.51
PHRF1-203ENST00000416188 KRTAP4-8A0A0G2JLE6 195 aa5.57□□□□□ -1.52
PHRF1-203ENST00000416188 KRTAP4-8Q9BYQ9 185 aa5.57□□□□□ -1.52
PHRF1-203ENST00000416188 UBR4Q5T4S7 5183 aa5.56□□□□□ -1.52
PHRF1-203ENST00000416188 KRTAP9-6A0A140TA67 174 aa5.52□□□□□ -1.53
PHRF1-203ENST00000416188 LCE2AQ5TA79 106 aaPredicted RBP5.47□□□□□ -1.53
PHRF1-203ENST00000416188 LCE2DQ5TA82 110 aaPredicted RBP5.47□□□□□ -1.53
PHRF1-203ENST00000416188 MT1GP13640 62 aa5.46□□□□□ -1.54
PHRF1-203ENST00000416188 RNF213Q63HN8 5207 aa5.44□□□□□ -1.54
PHRF1-203ENST00000416188 FSIP2Q5CZC0 6907 aa5.43□□□□□ -1.54
PHRF1-203ENST00000416188 LCE3BQ5TA77 95 aa5.43□□□□□ -1.54
PHRF1-203ENST00000416188 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
PHRF1-203ENST00000416188 TNXBP22105 4242 aa5.42□□□□□ -1.54
PHRF1-203ENST00000416188 KRTAP12-4P60329 112 aa5.41□□□□□ -1.54
PHRF1-203ENST00000416188 KRTAP19-6Q3LI70 58 aa5.4□□□□□ -1.55
PHRF1-203ENST00000416188 FAT4Q6V0I7 4981 aa5.38□□□□□ -1.55
PHRF1-203ENST00000416188 MUC17Q685J3 4493 aa5.33□□□□□ -1.56
PHRF1-203ENST00000416188 KRTAP19-3Q7Z4W3 81 aa5.3□□□□□ -1.56
PHRF1-203ENST00000416188 FLGP20930 4061 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms