RNA–Protein interactions for RNA: ENST00000400060.8

PTPRM-203, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5 BASIC

Gene PTPRM, Length 5,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-203ENST00000400060 SPRR5A0A1B0GTR4 108 aa4.29□□□□□ -1.72
PTPRM-203ENST00000400060 DNAH3Q8TD57 4116 aa4.27□□□□□ -1.73
PTPRM-203ENST00000400060 DNAH9Q9NYC9 4486 aa4.27□□□□□ -1.73
PTPRM-203ENST00000400060 DNAH11Q96DT5 4516 aa4.2□□□□□ -1.74
PTPRM-203ENST00000400060 LCE3AQ5TA76 89 aa4.18□□□□□ -1.74
PTPRM-203ENST00000400060 KRTAP12-3P60328 96 aa4.18□□□□□ -1.74
PTPRM-203ENST00000400060 DNAH10Q8IVF4 4471 aa4.18□□□□□ -1.74
PTPRM-203ENST00000400060 DNAH1Q9P2D7 4330 aa4.17□□□□□ -1.74
PTPRM-203ENST00000400060 DNAH17Q9UFH2 4485 aa4.17□□□□□ -1.74
PTPRM-203ENST00000400060 PLECQ15149 4684 aaKnown RBP4.15□□□□□ -1.74
PTPRM-203ENST00000400060 KRTAP10-12P60413 245 aa4.15□□□□□ -1.74
PTPRM-203ENST00000400060 LYSTQ99698 3801 aa4.15□□□□□ -1.75
PTPRM-203ENST00000400060 LORP23490 312 aaPredicted RBP4.14□□□□□ -1.75
PTPRM-203ENST00000400060 DNAH5Q8TE73 4624 aa4.13□□□□□ -1.75
PTPRM-203ENST00000400060 CSMD3Q7Z407 3707 aa4.13□□□□□ -1.75
PTPRM-203ENST00000400060 VPS13DQ5THJ4 4388 aa4.13□□□□□ -1.75
PTPRM-203ENST00000400060 KRTAP4-5Q9BYR2 181 aa4.13□□□□□ -1.75
PTPRM-203ENST00000400060 PRKDCP78527 4128 aaKnown RBP4.12□□□□□ -1.75
PTPRM-203ENST00000400060 DNAH8Q96JB1 4490 aa4.11□□□□□ -1.75
PTPRM-203ENST00000400060 DNHD1Q96M86 4753 aa4.1□□□□□ -1.75
PTPRM-203ENST00000400060 DNAH7Q8WXX0 4024 aa4.09□□□□□ -1.76
PTPRM-203ENST00000400060 STARD9Q9P2P6 4700 aa4.08□□□□□ -1.76
PTPRM-203ENST00000400060 DYNC2H1Q8NCM8 4307 aaKnown RBP4.06□□□□□ -1.76
PTPRM-203ENST00000400060 KMT2AQ03164 3969 aa3.99□□□□□ -1.77
PTPRM-203ENST00000400060 KRTAP8-1Q8IUC2 63 aa3.99□□□□□ -1.77
PTPRM-203ENST00000400060 DNAH6Q9C0G6 4158 aa3.98□□□□□ -1.77
PTPRM-203ENST00000400060 DYNC1H1Q14204 4646 aaKnown RBP3.97□□□□□ -1.77
PTPRM-203ENST00000400060 KRTAP19-4Q3LI73 84 aa3.97□□□□□ -1.77
PTPRM-203ENST00000400060 SACSQ9NZJ4 4579 aa3.95□□□□□ -1.78
PTPRM-203ENST00000400060 LRP1BQ9NZR2 4599 aa3.95□□□□□ -1.78
PTPRM-203ENST00000400060 HECTD4Q9Y4D8 3996 aa3.93□□□□□ -1.78
PTPRM-203ENST00000400060 FAT1Q14517 4588 aa3.92□□□□□ -1.78
PTPRM-203ENST00000400060 KRTAP4-1Q9BYQ7 146 aa3.92□□□□□ -1.78
PTPRM-203ENST00000400060 SPRR2GQ9BYE4 73 aa3.9□□□□□ -1.79
PTPRM-203ENST00000400060 FAT2Q9NYQ8 4349 aa3.86□□□□□ -1.79
PTPRM-203ENST00000400060 HYDINQ4G0P3 5121 aa3.86□□□□□ -1.79
PTPRM-203ENST00000400060 FRAS1Q86XX4 4008 aa3.84□□□□□ -1.79
PTPRM-203ENST00000400060 LCE3CQ5T5A8 94 aa3.82□□□□□ -1.8
PTPRM-203ENST00000400060 PKD1P98161 4303 aa3.8□□□□□ -1.8
PTPRM-203ENST00000400060 VPS13BQ7Z7G8 4022 aa3.78□□□□□ -1.8
PTPRM-203ENST00000400060 RYR1P21817 5038 aa3.77□□□□□ -1.81
PTPRM-203ENST00000400060 APOBP04114 4563 aaKnown RBP3.76□□□□□ -1.81
PTPRM-203ENST00000400060 PKHD1P08F94 4074 aa3.76□□□□□ -1.81
PTPRM-203ENST00000400060 MT1HP80294 61 aa3.76□□□□□ -1.81
PTPRM-203ENST00000400060 MT2AP02795 61 aa3.73□□□□□ -1.81
PTPRM-203ENST00000400060 KMT2CQ8NEZ4 4911 aaKnown RBP3.69□□□□□ -1.82
PTPRM-203ENST00000400060 RYR2Q92736 4967 aa3.69□□□□□ -1.82
PTPRM-203ENST00000400060 KRTAP17-1Q9BYP8 105 aa3.69□□□□□ -1.82
PTPRM-203ENST00000400060 KIAA1109Q2LD37 5005 aa3.67□□□□□ -1.82
PTPRM-203ENST00000400060 MT1FP04733 61 aa3.66□□□□□ -1.82
PTPRM-203ENST00000400060 KRTAP10-5P60370 271 aa3.66□□□□□ -1.82
PTPRM-203ENST00000400060 MYCBP2O75592 4640 aa3.65□□□□□ -1.82
PTPRM-203ENST00000400060 PKHD1L1Q86WI1 4243 aa3.62□□□□□ -1.83
PTPRM-203ENST00000400060 FAT3Q8TDW7 4589 aa3.62□□□□□ -1.83
PTPRM-203ENST00000400060 KRTAP19-8Q3LI54 63 aa3.62□□□□□ -1.83
PTPRM-203ENST00000400060 KRTAP19-5Q3LI72 72 aa3.61□□□□□ -1.83
PTPRM-203ENST00000400060 LRP1Q07954 4544 aaKnown RBP3.61□□□□□ -1.83
PTPRM-203ENST00000400060 RYR3Q15413 4870 aa3.61□□□□□ -1.83
PTPRM-203ENST00000400060 CRCT1Q9UGL9 99 aa3.6□□□□□ -1.83
PTPRM-203ENST00000400060 HSPG2P98160 4391 aa3.6□□□□□ -1.83
PTPRM-203ENST00000400060 KRTAP19-1Q8IUB9 90 aa3.59□□□□□ -1.83
PTPRM-203ENST00000400060 KRTAP12-4P60329 112 aa3.49□□□□□ -1.85
PTPRM-203ENST00000400060 MT1XP80297 61 aa3.48□□□□□ -1.85
PTPRM-203ENST00000400060 EPPK1P58107 5090 aaKnown RBP3.47□□□□□ -1.85
PTPRM-203ENST00000400060 LRP2P98164 4655 aa3.46□□□□□ -1.86
PTPRM-203ENST00000400060 TNXBP22105 4242 aa3.45□□□□□ -1.86
PTPRM-203ENST00000400060 LCE2CQ5TA81 110 aa3.45□□□□□ -1.86
PTPRM-203ENST00000400060 KRTAP10-7P60409 375 aaPredicted RBP3.44□□□□□ -1.86
PTPRM-203ENST00000400060 KRTAP9-8Q9BYQ0 159 aa3.44□□□□□ -1.86
PTPRM-203ENST00000400060 MT1BP07438 61 aa3.43□□□□□ -1.86
PTPRM-203ENST00000400060 HERC2O95714 4834 aa3.41□□□□□ -1.86
PTPRM-203ENST00000400060 KRTAP19-2Q3LHN2 52 aa3.41□□□□□ -1.86
PTPRM-203ENST00000400060 KRTAP2-3P0C7H8 128 aa3.4□□□□□ -1.87
PTPRM-203ENST00000400060 KRTAP2-4Q9BYR9 128 aa3.4□□□□□ -1.87
PTPRM-203ENST00000400060 KRTAP2-1Q9BYU5 128 aa3.4□□□□□ -1.87
PTPRM-203ENST00000400060 HERC1Q15751 4861 aa3.39□□□□□ -1.87
PTPRM-203ENST00000400060 KRTAP9-3Q9BYQ3 159 aa3.34□□□□□ -1.87
PTPRM-203ENST00000400060 BIRC6Q9NR09 4857 aa3.31□□□□□ -1.88
PTPRM-203ENST00000400060 ABCA13Q86UQ4 5058 aa3.31□□□□□ -1.88
PTPRM-203ENST00000400060 LPAP08519 4548 aa3.3□□□□□ -1.88
PTPRM-203ENST00000400060 LCE2DQ5TA82 110 aaPredicted RBP3.29□□□□□ -1.88
PTPRM-203ENST00000400060 MUC17Q685J3 4493 aa3.28□□□□□ -1.88
PTPRM-203ENST00000400060 SPRR2FQ96RM1 72 aa3.28□□□□□ -1.89
PTPRM-203ENST00000400060 LCE3EQ5T5B0 92 aa3.26□□□□□ -1.89
PTPRM-203ENST00000400060 MT1LQ93083 61 aa3.24□□□□□ -1.89
PTPRM-203ENST00000400060 LCE3DQ9BYE3 92 aa3.23□□□□□ -1.89
PTPRM-203ENST00000400060 FLGP20930 4061 aaPredicted RBP3.22□□□□□ -1.89
PTPRM-203ENST00000400060 MT1EP04732 61 aa3.21□□□□□ -1.9
PTPRM-203ENST00000400060 PCLOQ9Y6V0 5065 aa3.21□□□□□ -1.9
PTPRM-203ENST00000400060 KRTAP4-8A0A0G2JLE6 195 aa3.2□□□□□ -1.9
PTPRM-203ENST00000400060 KRTAP4-8Q9BYQ9 185 aa3.2□□□□□ -1.9
PTPRM-203ENST00000400060 MT1GP13640 62 aa3.16□□□□□ -1.9
PTPRM-203ENST00000400060 LCE2BO14633 110 aa3.16□□□□□ -1.9
PTPRM-203ENST00000400060 LCE3BQ5TA77 95 aa3.14□□□□□ -1.91
PTPRM-203ENST00000400060 PRM1P04553 51 aa3.12□□□□□ -1.91
PTPRM-203ENST00000400060 MUC2Q02817 5179 aa3.09□□□□□ -1.91
PTPRM-203ENST00000400060 HMCN2Q8NDA2 5059 aa3.06□□□□□ -1.92
PTPRM-203ENST00000400060 MT1AP04731 61 aa3.06□□□□□ -1.92
PTPRM-203ENST00000400060 KRTAP19-3Q7Z4W3 81 aa3.05□□□□□ -1.92
PTPRM-203ENST00000400060 SPRR2EP22531 72 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms