RNA–Protein interactions for RNA: ENST00000388996.9

KCNQ3-201, Transcript of potassium voltage-gated channel subfamily Q member 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene KCNQ3, Length 11,510 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNQ3-201ENST00000388996 KRTAP3-3Q9BYR6 98 aa5.45□□□□□ -1.54
KCNQ3-201ENST00000388996 INE1O15225 51 aa5.43□□□□□ -1.54
KCNQ3-201ENST00000388996 CRCT1Q9UGL9 99 aa5.42□□□□□ -1.54
KCNQ3-201ENST00000388996 ANK3Q12955 4377 aaKnown RBP5.41□□□□□ -1.54
KCNQ3-201ENST00000388996 KRTAP10-4P60372 401 aaPredicted RBP5.41□□□□□ -1.54
KCNQ3-201ENST00000388996 KRTAP4-5Q9BYR2 181 aa5.4□□□□□ -1.54
KCNQ3-201ENST00000388996 HUWE1Q7Z6Z7 4374 aaKnown RBP5.4□□□□□ -1.54
KCNQ3-201ENST00000388996 KRTAP12-3P60328 96 aa5.38□□□□□ -1.55
KCNQ3-201ENST00000388996 KRTAP23-1A1A580 65 aa5.31□□□□□ -1.56
KCNQ3-201ENST00000388996 KMT2AQ03164 3969 aa5.24□□□□□ -1.57
KCNQ3-201ENST00000388996 VPS13BQ7Z7G8 4022 aa5.24□□□□□ -1.57
KCNQ3-201ENST00000388996 LCE3AQ5TA76 89 aa5.21□□□□□ -1.57
KCNQ3-201ENST00000388996 DNAH2Q9P225 4427 aa5.21□□□□□ -1.58
KCNQ3-201ENST00000388996 KRTAP8-1Q8IUC2 63 aa5.15□□□□□ -1.58
KCNQ3-201ENST00000388996 DNAH10Q8IVF4 4471 aa5.09□□□□□ -1.6
KCNQ3-201ENST00000388996 DNAH6Q9C0G6 4158 aa5.08□□□□□ -1.6
KCNQ3-201ENST00000388996 LORP23490 312 aaPredicted RBP5.06□□□□□ -1.6
KCNQ3-201ENST00000388996 KRTAP10-5P60370 271 aa5.03□□□□□ -1.6
KCNQ3-201ENST00000388996 PRKDCP78527 4128 aaKnown RBP5□□□□□ -1.61
KCNQ3-201ENST00000388996 FRAS1Q86XX4 4008 aa5□□□□□ -1.61
KCNQ3-201ENST00000388996 FLGP20930 4061 aaPredicted RBP4.92□□□□□ -1.62
KCNQ3-201ENST00000388996 MT1HP80294 61 aa4.89□□□□□ -1.63
KCNQ3-201ENST00000388996 KRTAP4-1Q9BYQ7 146 aa4.89□□□□□ -1.63
KCNQ3-201ENST00000388996 DNAH11Q96DT5 4516 aa4.88□□□□□ -1.63
KCNQ3-201ENST00000388996 MT2AP02795 61 aa4.84□□□□□ -1.63
KCNQ3-201ENST00000388996 SPRR2GQ9BYE4 73 aa4.84□□□□□ -1.63
KCNQ3-201ENST00000388996 FAT2Q9NYQ8 4349 aa4.8□□□□□ -1.64
KCNQ3-201ENST00000388996 DNAH9Q9NYC9 4486 aa4.8□□□□□ -1.64
KCNQ3-201ENST00000388996 PKHD1P08F94 4074 aa4.79□□□□□ -1.64
KCNQ3-201ENST00000388996 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
KCNQ3-201ENST00000388996 KRTAP10-7P60409 375 aaPredicted RBP4.77□□□□□ -1.65
KCNQ3-201ENST00000388996 KRTAP19-5Q3LI72 72 aa4.75□□□□□ -1.65
KCNQ3-201ENST00000388996 MT1FP04733 61 aa4.74□□□□□ -1.65
KCNQ3-201ENST00000388996 DNAH5Q8TE73 4624 aa4.73□□□□□ -1.65
KCNQ3-201ENST00000388996 DYNC2H1Q8NCM8 4307 aaKnown RBP4.73□□□□□ -1.65
KCNQ3-201ENST00000388996 VPS13DQ5THJ4 4388 aa4.72□□□□□ -1.65
KCNQ3-201ENST00000388996 LCE3CQ5T5A8 94 aa4.68□□□□□ -1.66
KCNQ3-201ENST00000388996 STARD9Q9P2P6 4700 aa4.67□□□□□ -1.66
KCNQ3-201ENST00000388996 DNAH17Q9UFH2 4485 aa4.63□□□□□ -1.67
KCNQ3-201ENST00000388996 RYR1P21817 5038 aa4.61□□□□□ -1.67
KCNQ3-201ENST00000388996 KRTAP19-4Q3LI73 84 aa4.61□□□□□ -1.67
KCNQ3-201ENST00000388996 PLECQ15149 4684 aaKnown RBP4.6□□□□□ -1.67
KCNQ3-201ENST00000388996 LRP1Q07954 4544 aaKnown RBP4.6□□□□□ -1.67
KCNQ3-201ENST00000388996 DYNC1H1Q14204 4646 aaKnown RBP4.58□□□□□ -1.68
KCNQ3-201ENST00000388996 DNHD1Q96M86 4753 aa4.56□□□□□ -1.68
KCNQ3-201ENST00000388996 PKHD1L1Q86WI1 4243 aa4.55□□□□□ -1.68
KCNQ3-201ENST00000388996 DNAH8Q96JB1 4490 aa4.53□□□□□ -1.68
KCNQ3-201ENST00000388996 SPRR2EP22531 72 aa4.47□□□□□ -1.69
KCNQ3-201ENST00000388996 SPRR2BP35325 72 aa4.47□□□□□ -1.69
KCNQ3-201ENST00000388996 SPRR2AP35326 72 aa4.47□□□□□ -1.69
KCNQ3-201ENST00000388996 PCLOQ9Y6V0 5065 aa4.44□□□□□ -1.7
KCNQ3-201ENST00000388996 KRTAP19-8Q3LI54 63 aa4.44□□□□□ -1.7
KCNQ3-201ENST00000388996 RYR3Q15413 4870 aa4.42□□□□□ -1.7
KCNQ3-201ENST00000388996 LCE3BQ5TA77 95 aa4.41□□□□□ -1.7
KCNQ3-201ENST00000388996 SACSQ9NZJ4 4579 aa4.4□□□□□ -1.7
KCNQ3-201ENST00000388996 MT1XP80297 61 aa4.39□□□□□ -1.71
KCNQ3-201ENST00000388996 KRTAP19-1Q8IUB9 90 aa4.38□□□□□ -1.71
KCNQ3-201ENST00000388996 PKD1P98161 4303 aa4.35□□□□□ -1.71
KCNQ3-201ENST00000388996 SPRR2DP22532 72 aa4.35□□□□□ -1.71
KCNQ3-201ENST00000388996 LRP1BQ9NZR2 4599 aa4.35□□□□□ -1.71
KCNQ3-201ENST00000388996 APOBP04114 4563 aaKnown RBP4.33□□□□□ -1.72
KCNQ3-201ENST00000388996 LCE2BO14633 110 aa4.31□□□□□ -1.72
KCNQ3-201ENST00000388996 KRTAP12-4P60329 112 aa4.29□□□□□ -1.72
KCNQ3-201ENST00000388996 HSPG2P98160 4391 aa4.29□□□□□ -1.72
KCNQ3-201ENST00000388996 FAT1Q14517 4588 aa4.28□□□□□ -1.72
KCNQ3-201ENST00000388996 MT1GP13640 62 aa4.28□□□□□ -1.72
KCNQ3-201ENST00000388996 KRTAP17-1Q9BYP8 105 aa4.22□□□□□ -1.73
KCNQ3-201ENST00000388996 MT1BP07438 61 aa4.22□□□□□ -1.73
KCNQ3-201ENST00000388996 KRTAP9-8Q9BYQ0 159 aa4.19□□□□□ -1.74
KCNQ3-201ENST00000388996 KRTAP9-3Q9BYQ3 159 aa4.17□□□□□ -1.74
KCNQ3-201ENST00000388996 MYCBP2O75592 4640 aa4.16□□□□□ -1.74
KCNQ3-201ENST00000388996 FAT3Q8TDW7 4589 aa4.1□□□□□ -1.75
KCNQ3-201ENST00000388996 KRTAP4-8A0A0G2JLE6 195 aa4.09□□□□□ -1.76
KCNQ3-201ENST00000388996 KRTAP4-8Q9BYQ9 185 aa4.09□□□□□ -1.76
KCNQ3-201ENST00000388996 LCE2CQ5TA81 110 aa4.08□□□□□ -1.76
KCNQ3-201ENST00000388996 RYR2Q92736 4967 aa4.08□□□□□ -1.76
KCNQ3-201ENST00000388996 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
KCNQ3-201ENST00000388996 TNXBP22105 4242 aa4.07□□□□□ -1.76
KCNQ3-201ENST00000388996 SPRR5A0A1B0GTR4 108 aa4.06□□□□□ -1.76
KCNQ3-201ENST00000388996 KRTAP19-3Q7Z4W3 81 aa4.06□□□□□ -1.76
KCNQ3-201ENST00000388996 MT1LQ93083 61 aa4.02□□□□□ -1.77
KCNQ3-201ENST00000388996 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
KCNQ3-201ENST00000388996 HYDINQ4G0P3 5121 aa3.98□□□□□ -1.77
KCNQ3-201ENST00000388996 MT1EP04732 61 aa3.96□□□□□ -1.77
KCNQ3-201ENST00000388996 LCE2DQ5TA82 110 aaPredicted RBP3.94□□□□□ -1.78
KCNQ3-201ENST00000388996 HERC2O95714 4834 aa3.93□□□□□ -1.78
KCNQ3-201ENST00000388996 KIAA1109Q2LD37 5005 aa3.92□□□□□ -1.78
KCNQ3-201ENST00000388996 LRP2P98164 4655 aa3.91□□□□□ -1.78
KCNQ3-201ENST00000388996 MT1MQ8N339 61 aa3.88□□□□□ -1.79
KCNQ3-201ENST00000388996 MT4P47944 62 aa3.87□□□□□ -1.79
KCNQ3-201ENST00000388996 KRTAP19-2Q3LHN2 52 aa3.87□□□□□ -1.79
KCNQ3-201ENST00000388996 KRTAP4-7Q9BYR0 210 aa3.86□□□□□ -1.79
KCNQ3-201ENST00000388996 HERC1Q15751 4861 aa3.82□□□□□ -1.8
KCNQ3-201ENST00000388996 KMT2CQ8NEZ4 4911 aaKnown RBP3.82□□□□□ -1.8
KCNQ3-201ENST00000388996 EPPK1P58107 5090 aaKnown RBP3.8□□□□□ -1.8
KCNQ3-201ENST00000388996 MT3P25713 68 aa3.8□□□□□ -1.8
KCNQ3-201ENST00000388996 LPAP08519 4548 aa3.79□□□□□ -1.8
KCNQ3-201ENST00000388996 KRTAP9-2Q9BYQ4 174 aa3.78□□□□□ -1.8
KCNQ3-201ENST00000388996 MUC17Q685J3 4493 aa3.78□□□□□ -1.81
KCNQ3-201ENST00000388996 KRTAP19-6Q3LI70 58 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms