RNA–Protein interactions for RNA: ENST00000380877.7

GABPB1-203, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GABPB1, Length 4,816 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-203ENST00000380877 ANK2Q01484 3957 aa5.81□□□□□ -1.48
GABPB1-203ENST00000380877 DNAH17Q9UFH2 4485 aa5.81□□□□□ -1.48
GABPB1-203ENST00000380877 KRTAP12-1P59990 96 aa5.8□□□□□ -1.48
GABPB1-203ENST00000380877 DYNC1H1Q14204 4646 aaKnown RBP5.79□□□□□ -1.48
GABPB1-203ENST00000380877 PRO2289Q9P1D8 64 aa5.78□□□□□ -1.48
GABPB1-203ENST00000380877 KRTAP13-4Q3LI77 160 aa5.78□□□□□ -1.48
GABPB1-203ENST00000380877 FAT1Q14517 4588 aa5.77□□□□□ -1.49
GABPB1-203ENST00000380877 KRTAP3-3Q9BYR6 98 aa5.75□□□□□ -1.49
GABPB1-203ENST00000380877 LRP1BQ9NZR2 4599 aa5.74□□□□□ -1.49
GABPB1-203ENST00000380877 NDUFAF8A1L188 74 aa5.74□□□□□ -1.49
GABPB1-203ENST00000380877 DNAH2Q9P225 4427 aa5.7□□□□□ -1.5
GABPB1-203ENST00000380877 KRTAP3-2Q9BYR7 98 aa5.69□□□□□ -1.5
GABPB1-203ENST00000380877 DNAH3Q8TD57 4116 aa5.65□□□□□ -1.51
GABPB1-203ENST00000380877 KMT2AQ03164 3969 aa5.64□□□□□ -1.51
GABPB1-203ENST00000380877 RYR1P21817 5038 aa5.63□□□□□ -1.51
GABPB1-203ENST00000380877 DYNC2H1Q8NCM8 4307 aaKnown RBP5.6□□□□□ -1.51
GABPB1-203ENST00000380877 KIAA1109Q2LD37 5005 aa5.59□□□□□ -1.52
GABPB1-203ENST00000380877 FAT2Q9NYQ8 4349 aa5.56□□□□□ -1.52
GABPB1-203ENST00000380877 DNAH8Q96JB1 4490 aa5.56□□□□□ -1.52
GABPB1-203ENST00000380877 CMYA5Q8N3K9 4069 aa5.55□□□□□ -1.52
GABPB1-203ENST00000380877 LYSTQ99698 3801 aa5.54□□□□□ -1.52
GABPB1-203ENST00000380877 SACSQ9NZJ4 4579 aa5.53□□□□□ -1.52
GABPB1-203ENST00000380877 RYR3Q15413 4870 aa5.5□□□□□ -1.53
GABPB1-203ENST00000380877 KRTAP4-1Q9BYQ7 146 aa5.45□□□□□ -1.54
GABPB1-203ENST00000380877 VPS13BQ7Z7G8 4022 aa5.45□□□□□ -1.54
GABPB1-203ENST00000380877 APOBP04114 4563 aaKnown RBP5.42□□□□□ -1.54
GABPB1-203ENST00000380877 MYCBP2O75592 4640 aa5.41□□□□□ -1.54
GABPB1-203ENST00000380877 LORP23490 312 aaPredicted RBP5.41□□□□□ -1.54
GABPB1-203ENST00000380877 KRTAP17-1Q9BYP8 105 aa5.4□□□□□ -1.55
GABPB1-203ENST00000380877 RYR2Q92736 4967 aa5.37□□□□□ -1.55
GABPB1-203ENST00000380877 DNAH6Q9C0G6 4158 aa5.36□□□□□ -1.55
GABPB1-203ENST00000380877 LRP1Q07954 4544 aaKnown RBP5.35□□□□□ -1.55
GABPB1-203ENST00000380877 DNAH7Q8WXX0 4024 aa5.34□□□□□ -1.55
GABPB1-203ENST00000380877 HECTD4Q9Y4D8 3996 aa5.33□□□□□ -1.56
GABPB1-203ENST00000380877 HYDINQ4G0P3 5121 aa5.31□□□□□ -1.56
GABPB1-203ENST00000380877 FRAS1Q86XX4 4008 aa5.26□□□□□ -1.57
GABPB1-203ENST00000380877 FAT3Q8TDW7 4589 aa5.26□□□□□ -1.57
GABPB1-203ENST00000380877 KRTAP10-12P60413 245 aa5.25□□□□□ -1.57
GABPB1-203ENST00000380877 KRTAP15-1Q3LI76 137 aa5.24□□□□□ -1.57
GABPB1-203ENST00000380877 HERC2O95714 4834 aa5.24□□□□□ -1.57
GABPB1-203ENST00000380877 MT1HP80294 61 aa5.23□□□□□ -1.57
GABPB1-203ENST00000380877 PKHD1P08F94 4074 aa5.23□□□□□ -1.57
GABPB1-203ENST00000380877 KMT2CQ8NEZ4 4911 aaKnown RBP5.17□□□□□ -1.58
GABPB1-203ENST00000380877 MT2AP02795 61 aa5.15□□□□□ -1.59
GABPB1-203ENST00000380877 HSPG2P98160 4391 aa5.13□□□□□ -1.59
GABPB1-203ENST00000380877 BIRC6Q9NR09 4857 aa5.12□□□□□ -1.59
GABPB1-203ENST00000380877 KRTAP23-1A1A580 65 aa5.1□□□□□ -1.59
GABPB1-203ENST00000380877 LRP2P98164 4655 aa5.1□□□□□ -1.59
GABPB1-203ENST00000380877 LCE3AQ5TA76 89 aa5.1□□□□□ -1.59
GABPB1-203ENST00000380877 KRTAP12-3P60328 96 aa5.09□□□□□ -1.59
GABPB1-203ENST00000380877 SPRR2GQ9BYE4 73 aa5.08□□□□□ -1.6
GABPB1-203ENST00000380877 PKD1P98161 4303 aa5.07□□□□□ -1.6
GABPB1-203ENST00000380877 MT1FP04733 61 aa5.07□□□□□ -1.6
GABPB1-203ENST00000380877 PCLOQ9Y6V0 5065 aa4.92□□□□□ -1.62
GABPB1-203ENST00000380877 EPPK1P58107 5090 aaKnown RBP4.91□□□□□ -1.62
GABPB1-203ENST00000380877 HERC1Q15751 4861 aa4.91□□□□□ -1.62
GABPB1-203ENST00000380877 KRTAP19-1Q8IUB9 90 aa4.88□□□□□ -1.63
GABPB1-203ENST00000380877 KRTAP8-1Q8IUC2 63 aa4.86□□□□□ -1.63
GABPB1-203ENST00000380877 ABCA13Q86UQ4 5058 aa4.85□□□□□ -1.63
GABPB1-203ENST00000380877 CRCT1Q9UGL9 99 aa4.85□□□□□ -1.63
GABPB1-203ENST00000380877 LCE2CQ5TA81 110 aa4.84□□□□□ -1.63
GABPB1-203ENST00000380877 LPAP08519 4548 aa4.84□□□□□ -1.63
GABPB1-203ENST00000380877 KRTAP19-8Q3LI54 63 aa4.8□□□□□ -1.64
GABPB1-203ENST00000380877 TNXBP22105 4242 aa4.78□□□□□ -1.64
GABPB1-203ENST00000380877 KRTAP9-8Q9BYQ0 159 aa4.78□□□□□ -1.64
GABPB1-203ENST00000380877 PKHD1L1Q86WI1 4243 aa4.75□□□□□ -1.65
GABPB1-203ENST00000380877 KRTAP19-2Q3LHN2 52 aa4.72□□□□□ -1.65
GABPB1-203ENST00000380877 MT1BP07438 61 aa4.69□□□□□ -1.66
GABPB1-203ENST00000380877 KRTAP19-5Q3LI72 72 aa4.67□□□□□ -1.66
GABPB1-203ENST00000380877 MT1XP80297 61 aa4.65□□□□□ -1.66
GABPB1-203ENST00000380877 MUC17Q685J3 4493 aa4.65□□□□□ -1.67
GABPB1-203ENST00000380877 KRTAP10-7P60409 375 aaPredicted RBP4.64□□□□□ -1.67
GABPB1-203ENST00000380877 KRTAP9-3Q9BYQ3 159 aa4.64□□□□□ -1.67
GABPB1-203ENST00000380877 INE1O15225 51 aa4.63□□□□□ -1.67
GABPB1-203ENST00000380877 KRTAP10-5P60370 271 aa4.61□□□□□ -1.67
GABPB1-203ENST00000380877 SPRR2FQ96RM1 72 aa4.58□□□□□ -1.68
GABPB1-203ENST00000380877 FLGP20930 4061 aaPredicted RBP4.58□□□□□ -1.68
GABPB1-203ENST00000380877 RNF213Q63HN8 5207 aa4.52□□□□□ -1.69
GABPB1-203ENST00000380877 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
GABPB1-203ENST00000380877 FAT4Q6V0I7 4981 aa4.5□□□□□ -1.69
GABPB1-203ENST00000380877 UBR4Q5T4S7 5183 aa4.49□□□□□ -1.69
GABPB1-203ENST00000380877 LCE2BO14633 110 aa4.47□□□□□ -1.69
GABPB1-203ENST00000380877 HMCN2Q8NDA2 5059 aa4.45□□□□□ -1.7
GABPB1-203ENST00000380877 KRTAP19-4Q3LI73 84 aa4.45□□□□□ -1.7
GABPB1-203ENST00000380877 KRTAP4-8A0A0G2JLE6 195 aa4.44□□□□□ -1.7
GABPB1-203ENST00000380877 KRTAP4-8Q9BYQ9 185 aa4.44□□□□□ -1.7
GABPB1-203ENST00000380877 MUC2Q02817 5179 aa4.36□□□□□ -1.71
GABPB1-203ENST00000380877 LCE2AQ5TA79 106 aaPredicted RBP4.33□□□□□ -1.72
GABPB1-203ENST00000380877 FSIP2Q5CZC0 6907 aa4.32□□□□□ -1.72
GABPB1-203ENST00000380877 SPRR2EP22531 72 aa4.26□□□□□ -1.73
GABPB1-203ENST00000380877 SPRR2BP35325 72 aa4.26□□□□□ -1.73
GABPB1-203ENST00000380877 SPRR2AP35326 72 aa4.26□□□□□ -1.73
GABPB1-203ENST00000380877 SPRR5A0A1B0GTR4 108 aa4.24□□□□□ -1.73
GABPB1-203ENST00000380877 MT1GP13640 62 aa4.23□□□□□ -1.73
GABPB1-203ENST00000380877 KRTAP19-6Q3LI70 58 aa4.2□□□□□ -1.74
GABPB1-203ENST00000380877 MT1EP04732 61 aa4.15□□□□□ -1.74
GABPB1-203ENST00000380877 MT1LQ93083 61 aa4.14□□□□□ -1.75
GABPB1-203ENST00000380877 KRTAP19-3Q7Z4W3 81 aa4.14□□□□□ -1.75
GABPB1-203ENST00000380877 KRTAP4-7Q9BYR0 210 aa4.11□□□□□ -1.75
GABPB1-203ENST00000380877 SPRR2DP22532 72 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 139.3 ms