RNA–Protein interactions for RNA: ENST00000380701.7

CCDC171-201, Transcript of coiled-coil domain containing 171, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC171, Length 6,512 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-201ENST00000380701 LORP23490 312 aaPredicted RBP2.84□□□□□ -1.95
CCDC171-201ENST00000380701 DNAH10Q8IVF4 4471 aa2.84□□□□□ -1.95
CCDC171-201ENST00000380701 COL7A1Q02388 2944 aa2.83□□□□□ -1.96
CCDC171-201ENST00000380701 KRTAP10-5P60370 271 aa2.83□□□□□ -1.96
CCDC171-201ENST00000380701 SMG1Q96Q15 3661 aaKnown RBP2.82□□□□□ -1.96
CCDC171-201ENST00000380701 DNAH11Q96DT5 4516 aa2.82□□□□□ -1.96
CCDC171-201ENST00000380701 DNAH2Q9P225 4427 aa2.81□□□□□ -1.96
CCDC171-201ENST00000380701 KRTAP4-1Q9BYQ7 146 aa2.8□□□□□ -1.96
CCDC171-201ENST00000380701 SPRR2FQ96RM1 72 aa2.79□□□□□ -1.96
CCDC171-201ENST00000380701 DNAH1Q9P2D7 4330 aa2.79□□□□□ -1.96
CCDC171-201ENST00000380701 MT1FP04733 61 aa2.77□□□□□ -1.97
CCDC171-201ENST00000380701 CSMD1Q96PZ7 3565 aa2.76□□□□□ -1.97
CCDC171-201ENST00000380701 HERC1Q15751 4861 aa2.76□□□□□ -1.97
CCDC171-201ENST00000380701 KRTAP19-8Q3LI54 63 aa2.75□□□□□ -1.97
CCDC171-201ENST00000380701 PLECQ15149 4684 aaKnown RBP2.75□□□□□ -1.97
CCDC171-201ENST00000380701 ZNF469Q96JG9 3925 aaPredicted RBP2.74□□□□□ -1.97
CCDC171-201ENST00000380701 DNAH5Q8TE73 4624 aa2.72□□□□□ -1.97
CCDC171-201ENST00000380701 CSMD2Q7Z408 3487 aa2.71□□□□□ -1.98
CCDC171-201ENST00000380701 LCE3CQ5T5A8 94 aa2.7□□□□□ -1.98
CCDC171-201ENST00000380701 SVEP1Q4LDE5 3571 aa2.7□□□□□ -1.98
CCDC171-201ENST00000380701 KRTAP19-5Q3LI72 72 aa2.69□□□□□ -1.98
CCDC171-201ENST00000380701 MYCBP2O75592 4640 aa2.69□□□□□ -1.98
CCDC171-201ENST00000380701 CUBNO60494 3623 aa2.67□□□□□ -1.98
CCDC171-201ENST00000380701 SPRR2EP22531 72 aa2.67□□□□□ -1.98
CCDC171-201ENST00000380701 SPRR2BP35325 72 aa2.67□□□□□ -1.98
CCDC171-201ENST00000380701 SPRR2AP35326 72 aa2.67□□□□□ -1.98
CCDC171-201ENST00000380701 LRP1BQ9NZR2 4599 aa2.64□□□□□ -1.99
CCDC171-201ENST00000380701 DYNC1H1Q14204 4646 aaKnown RBP2.64□□□□□ -1.99
CCDC171-201ENST00000380701 KRTAP12-4P60329 112 aa2.63□□□□□ -1.99
CCDC171-201ENST00000380701 LRP1Q07954 4544 aaKnown RBP2.61□□□□□ -1.99
CCDC171-201ENST00000380701 DNAH9Q9NYC9 4486 aa2.61□□□□□ -1.99
CCDC171-201ENST00000380701 SPRR2DP22532 72 aa2.61□□□□□ -1.99
CCDC171-201ENST00000380701 MT1GP13640 62 aa2.61□□□□□ -1.99
CCDC171-201ENST00000380701 LCE2BO14633 110 aa2.6□□□□□ -1.99
CCDC171-201ENST00000380701 LCE2DQ5TA82 110 aaPredicted RBP2.6□□□□□ -1.99
CCDC171-201ENST00000380701 RYR1P21817 5038 aa2.59□□□□□ -1.99
CCDC171-201ENST00000380701 HSPG2P98160 4391 aa2.59□□□□□ -1.99
CCDC171-201ENST00000380701 KRTAP19-1Q8IUB9 90 aa2.59□□□□□ -1.99
CCDC171-201ENST00000380701 ANK2Q01484 3957 aa2.58□□□□□ -2
CCDC171-201ENST00000380701 CSMD3Q7Z407 3707 aa2.58□□□□□ -2
CCDC171-201ENST00000380701 CMYA5Q8N3K9 4069 aa2.57□□□□□ -2
CCDC171-201ENST00000380701 DNAH3Q8TD57 4116 aa2.57□□□□□ -2
CCDC171-201ENST00000380701 FAT1Q14517 4588 aa2.56□□□□□ -2
CCDC171-201ENST00000380701 TRRAPQ9Y4A5 3859 aa2.54□□□□□ -2
CCDC171-201ENST00000380701 DNAH17Q9UFH2 4485 aa2.54□□□□□ -2
CCDC171-201ENST00000380701 MT1XP80297 61 aa2.53□□□□□ -2
CCDC171-201ENST00000380701 MT1BP07438 61 aa2.53□□□□□ -2
CCDC171-201ENST00000380701 VPS13DQ5THJ4 4388 aa2.53□□□□□ -2
CCDC171-201ENST00000380701 LYSTQ99698 3801 aa2.52□□□□□ -2.01
CCDC171-201ENST00000380701 KRTAP9-8Q9BYQ0 159 aa2.52□□□□□ -2.01
CCDC171-201ENST00000380701 SACSQ9NZJ4 4579 aa2.51□□□□□ -2.01
CCDC171-201ENST00000380701 DNHD1Q96M86 4753 aa2.51□□□□□ -2.01
CCDC171-201ENST00000380701 BIRC6Q9NR09 4857 aa2.51□□□□□ -2.01
CCDC171-201ENST00000380701 RYR2Q92736 4967 aa2.51□□□□□ -2.01
CCDC171-201ENST00000380701 APOBP04114 4563 aaKnown RBP2.5□□□□□ -2.01
CCDC171-201ENST00000380701 KRTAP9-3Q9BYQ3 159 aa2.5□□□□□ -2.01
CCDC171-201ENST00000380701 RYR3Q15413 4870 aa2.48□□□□□ -2.01
CCDC171-201ENST00000380701 PCLOQ9Y6V0 5065 aa2.48□□□□□ -2.01
CCDC171-201ENST00000380701 FAT3Q8TDW7 4589 aa2.48□□□□□ -2.01
CCDC171-201ENST00000380701 DYNC2H1Q8NCM8 4307 aaKnown RBP2.47□□□□□ -2.01
CCDC171-201ENST00000380701 FAT2Q9NYQ8 4349 aa2.47□□□□□ -2.01
CCDC171-201ENST00000380701 DNAH8Q96JB1 4490 aa2.46□□□□□ -2.01
CCDC171-201ENST00000380701 LCE2CQ5TA81 110 aa2.44□□□□□ -2.02
CCDC171-201ENST00000380701 KRTAP19-3Q7Z4W3 81 aa2.44□□□□□ -2.02
CCDC171-201ENST00000380701 MT1LQ93083 61 aa2.42□□□□□ -2.02
CCDC171-201ENST00000380701 HERC2O95714 4834 aa2.41□□□□□ -2.02
CCDC171-201ENST00000380701 LCE3BQ5TA77 95 aa2.41□□□□□ -2.02
CCDC171-201ENST00000380701 KRTAP19-6Q3LI70 58 aa2.4□□□□□ -2.02
CCDC171-201ENST00000380701 LCE3DQ9BYE3 92 aa2.4□□□□□ -2.03
CCDC171-201ENST00000380701 KRTAP17-1Q9BYP8 105 aa2.39□□□□□ -2.03
CCDC171-201ENST00000380701 LCE3EQ5T5B0 92 aa2.39□□□□□ -2.03
CCDC171-201ENST00000380701 SPRR5A0A1B0GTR4 108 aa2.39□□□□□ -2.03
CCDC171-201ENST00000380701 PRKDCP78527 4128 aaKnown RBP2.37□□□□□ -2.03
CCDC171-201ENST00000380701 KIAA1109Q2LD37 5005 aa2.37□□□□□ -2.03
CCDC171-201ENST00000380701 DNAH6Q9C0G6 4158 aa2.36□□□□□ -2.03
CCDC171-201ENST00000380701 LRP2P98164 4655 aa2.36□□□□□ -2.03
CCDC171-201ENST00000380701 MT3P25713 68 aa2.36□□□□□ -2.03
CCDC171-201ENST00000380701 DNAH7Q8WXX0 4024 aa2.35□□□□□ -2.03
CCDC171-201ENST00000380701 PKD1P98161 4303 aa2.34□□□□□ -2.03
CCDC171-201ENST00000380701 MT1EP04732 61 aa2.34□□□□□ -2.03
CCDC171-201ENST00000380701 KMT2CQ8NEZ4 4911 aaKnown RBP2.34□□□□□ -2.04
CCDC171-201ENST00000380701 KRTAP9-2Q9BYQ4 174 aa2.32□□□□□ -2.04
CCDC171-201ENST00000380701 STARD9Q9P2P6 4700 aa2.31□□□□□ -2.04
CCDC171-201ENST00000380701 KRTAP4-8A0A0G2JLE6 195 aa2.31□□□□□ -2.04
CCDC171-201ENST00000380701 KRTAP4-8Q9BYQ9 185 aa2.31□□□□□ -2.04
CCDC171-201ENST00000380701 FRAS1Q86XX4 4008 aa2.3□□□□□ -2.04
CCDC171-201ENST00000380701 KRTAP19-2Q3LHN2 52 aa2.29□□□□□ -2.04
CCDC171-201ENST00000380701 PKHD1L1Q86WI1 4243 aa2.29□□□□□ -2.04
CCDC171-201ENST00000380701 KRTAP9-6A0A140TA67 174 aa2.29□□□□□ -2.04
CCDC171-201ENST00000380701 EPPK1P58107 5090 aaKnown RBP2.28□□□□□ -2.04
CCDC171-201ENST00000380701 MT1MQ8N339 61 aa2.28□□□□□ -2.04
CCDC171-201ENST00000380701 LCE1AQ5T7P2 110 aa2.26□□□□□ -2.05
CCDC171-201ENST00000380701 LCE2AQ5TA79 106 aaPredicted RBP2.24□□□□□ -2.05
CCDC171-201ENST00000380701 KRTAP20-1Q3LI63 56 aa2.22□□□□□ -2.05
CCDC171-201ENST00000380701 VPS13BQ7Z7G8 4022 aa2.22□□□□□ -2.05
CCDC171-201ENST00000380701 KRTAP6-3Q3LI67 103 aa2.22□□□□□ -2.05
CCDC171-201ENST00000380701 HECTD4Q9Y4D8 3996 aa2.2□□□□□ -2.06
CCDC171-201ENST00000380701 MT1AP04731 61 aa2.2□□□□□ -2.06
CCDC171-201ENST00000380701 PKHD1P08F94 4074 aa2.18□□□□□ -2.06
CCDC171-201ENST00000380701 MT4P47944 62 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 264.7 ms