RNA–Protein interactions for RNA: ENST00000380494.9

COL4A3BP-203, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 2 BASIC

Gene COL4A3BP, Length 5,651 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-203ENST00000380494 CUBNO60494 3623 aa6.66□□□□□ -1.34
COL4A3BP-203ENST00000380494 DNAH1Q9P2D7 4330 aa6.64□□□□□ -1.35
COL4A3BP-203ENST00000380494 DNAH9Q9NYC9 4486 aa6.62□□□□□ -1.35
COL4A3BP-203ENST00000380494 KRTAP19-4Q3LI73 84 aa6.6□□□□□ -1.35
COL4A3BP-203ENST00000380494 DNAH17Q9UFH2 4485 aa6.59□□□□□ -1.35
COL4A3BP-203ENST00000380494 KRTAP4-1Q9BYQ7 146 aa6.57□□□□□ -1.36
COL4A3BP-203ENST00000380494 AKAP9Q99996 3911 aa6.57□□□□□ -1.36
COL4A3BP-203ENST00000380494 DMDP11532 3685 aa6.57□□□□□ -1.36
COL4A3BP-203ENST00000380494 LCE3CQ5T5A8 94 aa6.57□□□□□ -1.36
COL4A3BP-203ENST00000380494 BSNQ9UPA5 3926 aa6.56□□□□□ -1.36
COL4A3BP-203ENST00000380494 DNAH5Q8TE73 4624 aa6.54□□□□□ -1.36
COL4A3BP-203ENST00000380494 SPENQ96T58 3664 aaKnown RBP6.53□□□□□ -1.36
COL4A3BP-203ENST00000380494 MT1HP80294 61 aa6.51□□□□□ -1.37
COL4A3BP-203ENST00000380494 DNAH8Q96JB1 4490 aa6.49□□□□□ -1.37
COL4A3BP-203ENST00000380494 DNAH3Q8TD57 4116 aa6.49□□□□□ -1.37
COL4A3BP-203ENST00000380494 MT2AP02795 61 aa6.48□□□□□ -1.37
COL4A3BP-203ENST00000380494 KRTAP19-5Q3LI72 72 aa6.47□□□□□ -1.37
COL4A3BP-203ENST00000380494 VPS13CQ709C8 3753 aa6.47□□□□□ -1.37
COL4A3BP-203ENST00000380494 VPS13DQ5THJ4 4388 aa6.44□□□□□ -1.38
COL4A3BP-203ENST00000380494 MUC3AQ02505 3323 aa6.43□□□□□ -1.38
COL4A3BP-203ENST00000380494 SPRR5A0A1B0GTR4 108 aa6.38□□□□□ -1.39
COL4A3BP-203ENST00000380494 SACSQ9NZJ4 4579 aa6.37□□□□□ -1.39
COL4A3BP-203ENST00000380494 CSMD2Q7Z408 3487 aa6.37□□□□□ -1.39
COL4A3BP-203ENST00000380494 PLECQ15149 4684 aaKnown RBP6.36□□□□□ -1.39
COL4A3BP-203ENST00000380494 MT1FP04733 61 aa6.32□□□□□ -1.4
COL4A3BP-203ENST00000380494 DYNC2H1Q8NCM8 4307 aaKnown RBP6.27□□□□□ -1.41
COL4A3BP-203ENST00000380494 CMYA5Q8N3K9 4069 aa6.26□□□□□ -1.41
COL4A3BP-203ENST00000380494 KRTAP10-7P60409 375 aaPredicted RBP6.23□□□□□ -1.41
COL4A3BP-203ENST00000380494 DYNC1H1Q14204 4646 aaKnown RBP6.21□□□□□ -1.42
COL4A3BP-203ENST00000380494 CSMD3Q7Z407 3707 aa6.2□□□□□ -1.42
COL4A3BP-203ENST00000380494 FAT2Q9NYQ8 4349 aa6.17□□□□□ -1.42
COL4A3BP-203ENST00000380494 KRTAP19-8Q3LI54 63 aa6.16□□□□□ -1.42
COL4A3BP-203ENST00000380494 DNAH6Q9C0G6 4158 aa6.14□□□□□ -1.43
COL4A3BP-203ENST00000380494 FAT1Q14517 4588 aa6.13□□□□□ -1.43
COL4A3BP-203ENST00000380494 LRP1BQ9NZR2 4599 aa6.13□□□□□ -1.43
COL4A3BP-203ENST00000380494 SPRR2FQ96RM1 72 aa6.05□□□□□ -1.44
COL4A3BP-203ENST00000380494 ANK2Q01484 3957 aa6.05□□□□□ -1.44
COL4A3BP-203ENST00000380494 KRTAP19-1Q8IUB9 90 aa6.05□□□□□ -1.44
COL4A3BP-203ENST00000380494 KRTAP12-4P60329 112 aa6.01□□□□□ -1.45
COL4A3BP-203ENST00000380494 MT1XP80297 61 aa6□□□□□ -1.45
COL4A3BP-203ENST00000380494 APOBP04114 4563 aaKnown RBP5.99□□□□□ -1.45
COL4A3BP-203ENST00000380494 STARD9Q9P2P6 4700 aa5.99□□□□□ -1.45
COL4A3BP-203ENST00000380494 DNAH7Q8WXX0 4024 aa5.98□□□□□ -1.45
COL4A3BP-203ENST00000380494 PRKDCP78527 4128 aaKnown RBP5.94□□□□□ -1.46
COL4A3BP-203ENST00000380494 VPS13BQ7Z7G8 4022 aa5.9□□□□□ -1.46
COL4A3BP-203ENST00000380494 LCE3BQ5TA77 95 aa5.89□□□□□ -1.47
COL4A3BP-203ENST00000380494 LRP1Q07954 4544 aaKnown RBP5.87□□□□□ -1.47
COL4A3BP-203ENST00000380494 ZNF469Q96JG9 3925 aaPredicted RBP5.87□□□□□ -1.47
COL4A3BP-203ENST00000380494 HSPG2P98160 4391 aa5.84□□□□□ -1.47
COL4A3BP-203ENST00000380494 MT1BP07438 61 aa5.84□□□□□ -1.47
COL4A3BP-203ENST00000380494 MT1GP13640 62 aa5.8□□□□□ -1.48
COL4A3BP-203ENST00000380494 HERC1Q15751 4861 aa5.79□□□□□ -1.48
COL4A3BP-203ENST00000380494 FAT3Q8TDW7 4589 aa5.78□□□□□ -1.48
COL4A3BP-203ENST00000380494 FRAS1Q86XX4 4008 aa5.76□□□□□ -1.49
COL4A3BP-203ENST00000380494 LCE3DQ9BYE3 92 aa5.75□□□□□ -1.49
COL4A3BP-203ENST00000380494 SPRR2EP22531 72 aa5.74□□□□□ -1.49
COL4A3BP-203ENST00000380494 SPRR2BP35325 72 aa5.74□□□□□ -1.49
COL4A3BP-203ENST00000380494 SPRR2AP35326 72 aa5.74□□□□□ -1.49
COL4A3BP-203ENST00000380494 LCE3EQ5T5B0 92 aa5.7□□□□□ -1.5
COL4A3BP-203ENST00000380494 RYR1P21817 5038 aa5.68□□□□□ -1.5
COL4A3BP-203ENST00000380494 KRTAP9-8Q9BYQ0 159 aa5.68□□□□□ -1.5
COL4A3BP-203ENST00000380494 HECTD4Q9Y4D8 3996 aa5.67□□□□□ -1.5
COL4A3BP-203ENST00000380494 KMT2AQ03164 3969 aa5.67□□□□□ -1.5
COL4A3BP-203ENST00000380494 MYCBP2O75592 4640 aa5.66□□□□□ -1.5
COL4A3BP-203ENST00000380494 SPRR2DP22532 72 aa5.59□□□□□ -1.52
COL4A3BP-203ENST00000380494 KRTAP9-3Q9BYQ3 159 aa5.57□□□□□ -1.52
COL4A3BP-203ENST00000380494 KRTAP4-8A0A0G2JLE6 195 aa5.57□□□□□ -1.52
COL4A3BP-203ENST00000380494 KRTAP4-8Q9BYQ9 185 aa5.57□□□□□ -1.52
COL4A3BP-203ENST00000380494 RYR3Q15413 4870 aa5.57□□□□□ -1.52
COL4A3BP-203ENST00000380494 LCE2BO14633 110 aa5.54□□□□□ -1.52
COL4A3BP-203ENST00000380494 MT1LQ93083 61 aa5.54□□□□□ -1.52
COL4A3BP-203ENST00000380494 RYR2Q92736 4967 aa5.53□□□□□ -1.52
COL4A3BP-203ENST00000380494 LCE2CQ5TA81 110 aa5.51□□□□□ -1.53
COL4A3BP-203ENST00000380494 KRTAP17-1Q9BYP8 105 aa5.5□□□□□ -1.53
COL4A3BP-203ENST00000380494 LYSTQ99698 3801 aa5.47□□□□□ -1.53
COL4A3BP-203ENST00000380494 PKD1P98161 4303 aa5.46□□□□□ -1.53
COL4A3BP-203ENST00000380494 DNHD1Q96M86 4753 aa5.45□□□□□ -1.54
COL4A3BP-203ENST00000380494 KRTAP19-3Q7Z4W3 81 aa5.45□□□□□ -1.54
COL4A3BP-203ENST00000380494 MT1EP04732 61 aa5.4□□□□□ -1.54
COL4A3BP-203ENST00000380494 PKHD1L1Q86WI1 4243 aa5.39□□□□□ -1.55
COL4A3BP-203ENST00000380494 KRTAP4-7Q9BYR0 210 aa5.36□□□□□ -1.55
COL4A3BP-203ENST00000380494 PRM1P04553 51 aa5.33□□□□□ -1.56
COL4A3BP-203ENST00000380494 KRTAP19-2Q3LHN2 52 aa5.28□□□□□ -1.56
COL4A3BP-203ENST00000380494 MT1MQ8N339 61 aa5.22□□□□□ -1.57
COL4A3BP-203ENST00000380494 MUC17Q685J3 4493 aa5.21□□□□□ -1.58
COL4A3BP-203ENST00000380494 MT3P25713 68 aa5.2□□□□□ -1.58
COL4A3BP-203ENST00000380494 PKHD1P08F94 4074 aa5.18□□□□□ -1.58
COL4A3BP-203ENST00000380494 KRTAP2-3P0C7H8 128 aa5.18□□□□□ -1.58
COL4A3BP-203ENST00000380494 KRTAP2-4Q9BYR9 128 aa5.18□□□□□ -1.58
COL4A3BP-203ENST00000380494 KRTAP2-1Q9BYU5 128 aa5.18□□□□□ -1.58
COL4A3BP-203ENST00000380494 TNXBP22105 4242 aa5.17□□□□□ -1.58
COL4A3BP-203ENST00000380494 HERC2O95714 4834 aa5.15□□□□□ -1.59
COL4A3BP-203ENST00000380494 FLGP20930 4061 aaPredicted RBP5.12□□□□□ -1.59
COL4A3BP-203ENST00000380494 LCE2DQ5TA82 110 aaPredicted RBP5.11□□□□□ -1.59
COL4A3BP-203ENST00000380494 LRP2P98164 4655 aa5.07□□□□□ -1.6
COL4A3BP-203ENST00000380494 LOC100996750A0A140TA64 210 aa5.07□□□□□ -1.6
COL4A3BP-203ENST00000380494 KIAA1109Q2LD37 5005 aa5.04□□□□□ -1.6
COL4A3BP-203ENST00000380494 LPAP08519 4548 aa5□□□□□ -1.61
COL4A3BP-203ENST00000380494 KMT2CQ8NEZ4 4911 aaKnown RBP4.97□□□□□ -1.61
COL4A3BP-203ENST00000380494 KRTAP19-6Q3LI70 58 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms