RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 KRTAP4-5Q9BYR2 181 aa7□□□□□ -1.29
NPHP4-201ENST00000378156 DNHD1Q96M86 4753 aa6.94□□□□□ -1.3
NPHP4-201ENST00000378156 VPS13DQ5THJ4 4388 aa6.93□□□□□ -1.3
NPHP4-201ENST00000378156 KRTAP15-1Q3LI76 137 aa6.91□□□□□ -1.3
NPHP4-201ENST00000378156 STARD9Q9P2P6 4700 aa6.9□□□□□ -1.3
NPHP4-201ENST00000378156 INE1O15225 51 aa6.9□□□□□ -1.3
NPHP4-201ENST00000378156 DNAH17Q9UFH2 4485 aa6.9□□□□□ -1.31
NPHP4-201ENST00000378156 ALMS1Q8TCU4 4167 aa6.87□□□□□ -1.31
NPHP4-201ENST00000378156 FAT1Q14517 4588 aa6.78□□□□□ -1.32
NPHP4-201ENST00000378156 DNAH8Q96JB1 4490 aa6.77□□□□□ -1.33
NPHP4-201ENST00000378156 LRP1BQ9NZR2 4599 aa6.77□□□□□ -1.33
NPHP4-201ENST00000378156 DNAH2Q9P225 4427 aa6.75□□□□□ -1.33
NPHP4-201ENST00000378156 DYNC1H1Q14204 4646 aaKnown RBP6.75□□□□□ -1.33
NPHP4-201ENST00000378156 PRKDCP78527 4128 aaKnown RBP6.73□□□□□ -1.33
NPHP4-201ENST00000378156 DNAH3Q8TD57 4116 aa6.7□□□□□ -1.34
NPHP4-201ENST00000378156 KMT2AQ03164 3969 aa6.68□□□□□ -1.34
NPHP4-201ENST00000378156 ANK2Q01484 3957 aa6.68□□□□□ -1.34
NPHP4-201ENST00000378156 LORP23490 312 aaPredicted RBP6.65□□□□□ -1.35
NPHP4-201ENST00000378156 KRTAP23-1A1A580 65 aa6.58□□□□□ -1.36
NPHP4-201ENST00000378156 DYNC2H1Q8NCM8 4307 aaKnown RBP6.56□□□□□ -1.36
NPHP4-201ENST00000378156 SACSQ9NZJ4 4579 aa6.56□□□□□ -1.36
NPHP4-201ENST00000378156 LYSTQ99698 3801 aa6.55□□□□□ -1.36
NPHP4-201ENST00000378156 CMYA5Q8N3K9 4069 aa6.52□□□□□ -1.37
NPHP4-201ENST00000378156 VPS13BQ7Z7G8 4022 aa6.51□□□□□ -1.37
NPHP4-201ENST00000378156 KRTAP10-12P60413 245 aa6.51□□□□□ -1.37
NPHP4-201ENST00000378156 RYR1P21817 5038 aa6.5□□□□□ -1.37
NPHP4-201ENST00000378156 FRAS1Q86XX4 4008 aa6.49□□□□□ -1.37
NPHP4-201ENST00000378156 FAT2Q9NYQ8 4349 aa6.48□□□□□ -1.37
NPHP4-201ENST00000378156 KRTAP4-1Q9BYQ7 146 aa6.45□□□□□ -1.38
NPHP4-201ENST00000378156 MYCBP2O75592 4640 aa6.45□□□□□ -1.38
NPHP4-201ENST00000378156 APOBP04114 4563 aaKnown RBP6.41□□□□□ -1.38
NPHP4-201ENST00000378156 DNAH6Q9C0G6 4158 aa6.41□□□□□ -1.38
NPHP4-201ENST00000378156 DNAH7Q8WXX0 4024 aa6.4□□□□□ -1.38
NPHP4-201ENST00000378156 KRTAP12-3P60328 96 aa6.39□□□□□ -1.39
NPHP4-201ENST00000378156 HECTD4Q9Y4D8 3996 aa6.39□□□□□ -1.39
NPHP4-201ENST00000378156 KIAA1109Q2LD37 5005 aa6.37□□□□□ -1.39
NPHP4-201ENST00000378156 LRP1Q07954 4544 aaKnown RBP6.3□□□□□ -1.4
NPHP4-201ENST00000378156 LCE3AQ5TA76 89 aa6.29□□□□□ -1.4
NPHP4-201ENST00000378156 RYR3Q15413 4870 aa6.25□□□□□ -1.41
NPHP4-201ENST00000378156 KRTAP17-1Q9BYP8 105 aa6.24□□□□□ -1.41
NPHP4-201ENST00000378156 HYDINQ4G0P3 5121 aa6.23□□□□□ -1.41
NPHP4-201ENST00000378156 MT1HP80294 61 aa6.21□□□□□ -1.42
NPHP4-201ENST00000378156 FAT3Q8TDW7 4589 aa6.2□□□□□ -1.42
NPHP4-201ENST00000378156 CRCT1Q9UGL9 99 aa6.18□□□□□ -1.42
NPHP4-201ENST00000378156 MT2AP02795 61 aa6.13□□□□□ -1.43
NPHP4-201ENST00000378156 PKHD1P08F94 4074 aa6.1□□□□□ -1.43
NPHP4-201ENST00000378156 RYR2Q92736 4967 aa6.1□□□□□ -1.43
NPHP4-201ENST00000378156 SPRR2GQ9BYE4 73 aa6.08□□□□□ -1.44
NPHP4-201ENST00000378156 KRTAP8-1Q8IUC2 63 aa6.04□□□□□ -1.44
NPHP4-201ENST00000378156 LRP2P98164 4655 aa6.01□□□□□ -1.45
NPHP4-201ENST00000378156 MT1FP04733 61 aa6.01□□□□□ -1.45
NPHP4-201ENST00000378156 KRTAP10-5P60370 271 aa5.95□□□□□ -1.46
NPHP4-201ENST00000378156 PKD1P98161 4303 aa5.93□□□□□ -1.46
NPHP4-201ENST00000378156 HSPG2P98160 4391 aa5.91□□□□□ -1.46
NPHP4-201ENST00000378156 HERC2O95714 4834 aa5.89□□□□□ -1.47
NPHP4-201ENST00000378156 KMT2CQ8NEZ4 4911 aaKnown RBP5.84□□□□□ -1.47
NPHP4-201ENST00000378156 KRTAP19-1Q8IUB9 90 aa5.8□□□□□ -1.48
NPHP4-201ENST00000378156 LPAP08519 4548 aa5.78□□□□□ -1.48
NPHP4-201ENST00000378156 KRTAP19-8Q3LI54 63 aa5.69□□□□□ -1.5
NPHP4-201ENST00000378156 KRTAP19-5Q3LI72 72 aa5.69□□□□□ -1.5
NPHP4-201ENST00000378156 PKHD1L1Q86WI1 4243 aa5.67□□□□□ -1.5
NPHP4-201ENST00000378156 TNXBP22105 4242 aa5.66□□□□□ -1.5
NPHP4-201ENST00000378156 KRTAP19-4Q3LI73 84 aa5.66□□□□□ -1.5
NPHP4-201ENST00000378156 SPRR2FQ96RM1 72 aa5.65□□□□□ -1.51
NPHP4-201ENST00000378156 BIRC6Q9NR09 4857 aa5.64□□□□□ -1.51
NPHP4-201ENST00000378156 KRTAP10-7P60409 375 aaPredicted RBP5.62□□□□□ -1.51
NPHP4-201ENST00000378156 LCE2CQ5TA81 110 aa5.61□□□□□ -1.51
NPHP4-201ENST00000378156 LCE3CQ5T5A8 94 aa5.59□□□□□ -1.51
NPHP4-201ENST00000378156 HERC1Q15751 4861 aa5.57□□□□□ -1.52
NPHP4-201ENST00000378156 KRTAP9-8Q9BYQ0 159 aa5.57□□□□□ -1.52
NPHP4-201ENST00000378156 MT1XP80297 61 aa5.57□□□□□ -1.52
NPHP4-201ENST00000378156 PCLOQ9Y6V0 5065 aa5.56□□□□□ -1.52
NPHP4-201ENST00000378156 MT1BP07438 61 aa5.55□□□□□ -1.52
NPHP4-201ENST00000378156 EPPK1P58107 5090 aaKnown RBP5.53□□□□□ -1.52
NPHP4-201ENST00000378156 KRTAP19-2Q3LHN2 52 aa5.53□□□□□ -1.52
NPHP4-201ENST00000378156 ABCA13Q86UQ4 5058 aa5.5□□□□□ -1.53
NPHP4-201ENST00000378156 MUC17Q685J3 4493 aa5.47□□□□□ -1.53
NPHP4-201ENST00000378156 KRTAP9-3Q9BYQ3 159 aa5.43□□□□□ -1.54
NPHP4-201ENST00000378156 SPRR5A0A1B0GTR4 108 aa5.42□□□□□ -1.54
NPHP4-201ENST00000378156 FLGP20930 4061 aaPredicted RBP5.38□□□□□ -1.55
NPHP4-201ENST00000378156 KRTAP4-8A0A0G2JLE6 195 aa5.33□□□□□ -1.56
NPHP4-201ENST00000378156 KRTAP4-8Q9BYQ9 185 aa5.33□□□□□ -1.56
NPHP4-201ENST00000378156 SPRR2EP22531 72 aa5.25□□□□□ -1.57
NPHP4-201ENST00000378156 SPRR2BP35325 72 aa5.25□□□□□ -1.57
NPHP4-201ENST00000378156 SPRR2AP35326 72 aa5.25□□□□□ -1.57
NPHP4-201ENST00000378156 LCE2BO14633 110 aa5.19□□□□□ -1.58
NPHP4-201ENST00000378156 KRTAP12-4P60329 112 aa5.19□□□□□ -1.58
NPHP4-201ENST00000378156 MT1GP13640 62 aa5.17□□□□□ -1.58
NPHP4-201ENST00000378156 RNF213Q63HN8 5207 aa5.17□□□□□ -1.58
NPHP4-201ENST00000378156 FAT4Q6V0I7 4981 aa5.16□□□□□ -1.58
NPHP4-201ENST00000378156 MUC2Q02817 5179 aa5.16□□□□□ -1.58
NPHP4-201ENST00000378156 UBR4Q5T4S7 5183 aa5.15□□□□□ -1.58
NPHP4-201ENST00000378156 HMCN2Q8NDA2 5059 aa5.1□□□□□ -1.59
NPHP4-201ENST00000378156 KRTAP4-7Q9BYR0 210 aa5.08□□□□□ -1.6
NPHP4-201ENST00000378156 SPRR2DP22532 72 aa5.07□□□□□ -1.6
NPHP4-201ENST00000378156 LCE3BQ5TA77 95 aa5.07□□□□□ -1.6
NPHP4-201ENST00000378156 KRTAP19-3Q7Z4W3 81 aa4.99□□□□□ -1.61
NPHP4-201ENST00000378156 FSIP2Q5CZC0 6907 aa4.98□□□□□ -1.61
NPHP4-201ENST00000378156 MT1LQ93083 61 aa4.97□□□□□ -1.61
NPHP4-201ENST00000378156 SYNE1Q8NF91 8797 aaKnown RBP4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms