RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 DNAH11Q96DT5 4516 aa5.29□□□□□ -1.56
PTPRF-203ENST00000372407 STARD9Q9P2P6 4700 aa5.26□□□□□ -1.57
PTPRF-203ENST00000372407 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
PTPRF-203ENST00000372407 KRTAP3-2Q9BYR7 98 aa5.24□□□□□ -1.57
PTPRF-203ENST00000372407 VPS13DQ5THJ4 4388 aa5.24□□□□□ -1.57
PTPRF-203ENST00000372407 DNAH1Q9P2D7 4330 aa5.23□□□□□ -1.57
PTPRF-203ENST00000372407 KRTAP3-3Q9BYR6 98 aa5.21□□□□□ -1.57
PTPRF-203ENST00000372407 DYNC1H1Q14204 4646 aaKnown RBP5.18□□□□□ -1.58
PTPRF-203ENST00000372407 DNAH10Q8IVF4 4471 aa5.18□□□□□ -1.58
PTPRF-203ENST00000372407 CSMD3Q7Z407 3707 aa5.17□□□□□ -1.58
PTPRF-203ENST00000372407 DNAH3Q8TD57 4116 aa5.13□□□□□ -1.59
PTPRF-203ENST00000372407 LRP1BQ9NZR2 4599 aa5.1□□□□□ -1.59
PTPRF-203ENST00000372407 KIAA1109Q2LD37 5005 aa5.1□□□□□ -1.59
PTPRF-203ENST00000372407 CMYA5Q8N3K9 4069 aa5.09□□□□□ -1.59
PTPRF-203ENST00000372407 DNAH17Q9UFH2 4485 aa5.09□□□□□ -1.59
PTPRF-203ENST00000372407 RYR1P21817 5038 aa5.08□□□□□ -1.6
PTPRF-203ENST00000372407 RYR3Q15413 4870 aa5.06□□□□□ -1.6
PTPRF-203ENST00000372407 FAT1Q14517 4588 aa5.06□□□□□ -1.6
PTPRF-203ENST00000372407 INE1O15225 51 aa5.04□□□□□ -1.6
PTPRF-203ENST00000372407 RYR2Q92736 4967 aa5.04□□□□□ -1.6
PTPRF-203ENST00000372407 KRTAP10-12P60413 245 aa5.03□□□□□ -1.6
PTPRF-203ENST00000372407 KMT2AQ03164 3969 aa5.03□□□□□ -1.6
PTPRF-203ENST00000372407 DYNC2H1Q8NCM8 4307 aaKnown RBP5.01□□□□□ -1.61
PTPRF-203ENST00000372407 SACSQ9NZJ4 4579 aa5□□□□□ -1.61
PTPRF-203ENST00000372407 FAT2Q9NYQ8 4349 aa5□□□□□ -1.61
PTPRF-203ENST00000372407 BIRC6Q9NR09 4857 aa4.98□□□□□ -1.61
PTPRF-203ENST00000372407 DNAH2Q9P225 4427 aa4.98□□□□□ -1.61
PTPRF-203ENST00000372407 KRTAP23-1A1A580 65 aa4.96□□□□□ -1.62
PTPRF-203ENST00000372407 KRTAP12-3P60328 96 aa4.94□□□□□ -1.62
PTPRF-203ENST00000372407 KRTAP17-1Q9BYP8 105 aa4.94□□□□□ -1.62
PTPRF-203ENST00000372407 KMT2CQ8NEZ4 4911 aaKnown RBP4.9□□□□□ -1.63
PTPRF-203ENST00000372407 DNAH7Q8WXX0 4024 aa4.89□□□□□ -1.63
PTPRF-203ENST00000372407 LYSTQ99698 3801 aa4.88□□□□□ -1.63
PTPRF-203ENST00000372407 HYDINQ4G0P3 5121 aa4.88□□□□□ -1.63
PTPRF-203ENST00000372407 LORP23490 312 aaPredicted RBP4.87□□□□□ -1.63
PTPRF-203ENST00000372407 DNAH6Q9C0G6 4158 aa4.87□□□□□ -1.63
PTPRF-203ENST00000372407 HERC2O95714 4834 aa4.86□□□□□ -1.63
PTPRF-203ENST00000372407 LCE3AQ5TA76 89 aa4.85□□□□□ -1.63
PTPRF-203ENST00000372407 APOBP04114 4563 aaKnown RBP4.84□□□□□ -1.63
PTPRF-203ENST00000372407 CRCT1Q9UGL9 99 aa4.83□□□□□ -1.64
PTPRF-203ENST00000372407 KRTAP4-1Q9BYQ7 146 aa4.8□□□□□ -1.64
PTPRF-203ENST00000372407 VPS13BQ7Z7G8 4022 aa4.77□□□□□ -1.65
PTPRF-203ENST00000372407 DNAH8Q96JB1 4490 aa4.74□□□□□ -1.65
PTPRF-203ENST00000372407 MT1HP80294 61 aa4.72□□□□□ -1.65
PTPRF-203ENST00000372407 EPPK1P58107 5090 aaKnown RBP4.71□□□□□ -1.65
PTPRF-203ENST00000372407 HSPG2P98160 4391 aa4.71□□□□□ -1.66
PTPRF-203ENST00000372407 PKHD1P08F94 4074 aa4.7□□□□□ -1.66
PTPRF-203ENST00000372407 LRP1Q07954 4544 aaKnown RBP4.7□□□□□ -1.66
PTPRF-203ENST00000372407 HECTD4Q9Y4D8 3996 aa4.64□□□□□ -1.67
PTPRF-203ENST00000372407 MYCBP2O75592 4640 aa4.62□□□□□ -1.67
PTPRF-203ENST00000372407 PKD1P98161 4303 aa4.6□□□□□ -1.67
PTPRF-203ENST00000372407 FAT3Q8TDW7 4589 aa4.6□□□□□ -1.67
PTPRF-203ENST00000372407 KRTAP8-1Q8IUC2 63 aa4.58□□□□□ -1.68
PTPRF-203ENST00000372407 MT2AP02795 61 aa4.57□□□□□ -1.68
PTPRF-203ENST00000372407 KRTAP10-5P60370 271 aa4.57□□□□□ -1.68
PTPRF-203ENST00000372407 ABCA13Q86UQ4 5058 aa4.56□□□□□ -1.68
PTPRF-203ENST00000372407 PCLOQ9Y6V0 5065 aa4.55□□□□□ -1.68
PTPRF-203ENST00000372407 HERC1Q15751 4861 aa4.54□□□□□ -1.68
PTPRF-203ENST00000372407 SPRR2GQ9BYE4 73 aa4.54□□□□□ -1.68
PTPRF-203ENST00000372407 MT1FP04733 61 aa4.48□□□□□ -1.69
PTPRF-203ENST00000372407 LRP2P98164 4655 aa4.48□□□□□ -1.69
PTPRF-203ENST00000372407 FRAS1Q86XX4 4008 aa4.47□□□□□ -1.69
PTPRF-203ENST00000372407 PKHD1L1Q86WI1 4243 aa4.42□□□□□ -1.7
PTPRF-203ENST00000372407 LCE2CQ5TA81 110 aa4.33□□□□□ -1.72
PTPRF-203ENST00000372407 KRTAP19-5Q3LI72 72 aa4.33□□□□□ -1.72
PTPRF-203ENST00000372407 LCE3CQ5T5A8 94 aa4.3□□□□□ -1.72
PTPRF-203ENST00000372407 KRTAP19-4Q3LI73 84 aa4.3□□□□□ -1.72
PTPRF-203ENST00000372407 LPAP08519 4548 aa4.29□□□□□ -1.72
PTPRF-203ENST00000372407 TNXBP22105 4242 aa4.26□□□□□ -1.73
PTPRF-203ENST00000372407 KRTAP9-8Q9BYQ0 159 aa4.26□□□□□ -1.73
PTPRF-203ENST00000372407 KRTAP10-7P60409 375 aaPredicted RBP4.23□□□□□ -1.73
PTPRF-203ENST00000372407 KRTAP19-1Q8IUB9 90 aa4.23□□□□□ -1.73
PTPRF-203ENST00000372407 SPRR2FQ96RM1 72 aa4.23□□□□□ -1.73
PTPRF-203ENST00000372407 KRTAP9-6A0A140TA67 174 aa4.23□□□□□ -1.73
PTPRF-203ENST00000372407 KRTAP19-8Q3LI54 63 aa4.22□□□□□ -1.73
PTPRF-203ENST00000372407 KRTAP19-2Q3LHN2 52 aa4.2□□□□□ -1.74
PTPRF-203ENST00000372407 RNF213Q63HN8 5207 aa4.19□□□□□ -1.74
PTPRF-203ENST00000372407 HMCN2Q8NDA2 5059 aa4.18□□□□□ -1.74
PTPRF-203ENST00000372407 UBR4Q5T4S7 5183 aa4.18□□□□□ -1.74
PTPRF-203ENST00000372407 KRTAP9-3Q9BYQ3 159 aa4.16□□□□□ -1.74
PTPRF-203ENST00000372407 KRTAP9-2Q9BYQ4 174 aa4.15□□□□□ -1.74
PTPRF-203ENST00000372407 LCE2AQ5TA79 106 aaPredicted RBP4.14□□□□□ -1.75
PTPRF-203ENST00000372407 LCE2DQ5TA82 110 aaPredicted RBP4.14□□□□□ -1.75
PTPRF-203ENST00000372407 FAT4Q6V0I7 4981 aa4.09□□□□□ -1.75
PTPRF-203ENST00000372407 MT1BP07438 61 aa4.09□□□□□ -1.75
PTPRF-203ENST00000372407 MT1XP80297 61 aa4.08□□□□□ -1.76
PTPRF-203ENST00000372407 SYNE1Q8NF91 8797 aaKnown RBP4.04□□□□□ -1.76
PTPRF-203ENST00000372407 MUC17Q685J3 4493 aa4.03□□□□□ -1.76
PTPRF-203ENST00000372407 LCE2BO14633 110 aa4.02□□□□□ -1.77
PTPRF-203ENST00000372407 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
PTPRF-203ENST00000372407 FLGP20930 4061 aaPredicted RBP4□□□□□ -1.77
PTPRF-203ENST00000372407 FSIP2Q5CZC0 6907 aa3.98□□□□□ -1.77
PTPRF-203ENST00000372407 SPRR2EP22531 72 aa3.97□□□□□ -1.77
PTPRF-203ENST00000372407 SPRR2BP35325 72 aa3.97□□□□□ -1.77
PTPRF-203ENST00000372407 SPRR2AP35326 72 aa3.97□□□□□ -1.77
PTPRF-203ENST00000372407 KRTAP12-4P60329 112 aa3.96□□□□□ -1.78
PTPRF-203ENST00000372407 LCE3BQ5TA77 95 aa3.94□□□□□ -1.78
PTPRF-203ENST00000372407 KRTAP4-8A0A0G2JLE6 195 aa3.92□□□□□ -1.78
PTPRF-203ENST00000372407 MT1GP13640 62 aa3.92□□□□□ -1.78
PTPRF-203ENST00000372407 KRTAP4-8Q9BYQ9 185 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms