RNA–Protein interactions for RNA: ENST00000372146.4

GTF3C4-201, Transcript of general transcription factor IIIC subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C4, Length 9,043 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4-201ENST00000372146 KRTAP3-3Q9BYR6 98 aa6.63□□□□□ -1.35
GTF3C4-201ENST00000372146 LYSTQ99698 3801 aa6.58□□□□□ -1.36
GTF3C4-201ENST00000372146 CMYA5Q8N3K9 4069 aa6.51□□□□□ -1.37
GTF3C4-201ENST00000372146 FRAS1Q86XX4 4008 aa6.4□□□□□ -1.38
GTF3C4-201ENST00000372146 ANK2Q01484 3957 aa6.35□□□□□ -1.39
GTF3C4-201ENST00000372146 MT1HL1P0DM35 61 aa6.31□□□□□ -1.4
GTF3C4-201ENST00000372146 DNAH3Q8TD57 4116 aa6.23□□□□□ -1.41
GTF3C4-201ENST00000372146 DNAH7Q8WXX0 4024 aa6.22□□□□□ -1.41
GTF3C4-201ENST00000372146 DNAH2Q9P225 4427 aa6.22□□□□□ -1.41
GTF3C4-201ENST00000372146 KRTAP8-1Q8IUC2 63 aa6.21□□□□□ -1.42
GTF3C4-201ENST00000372146 DNAH1Q9P2D7 4330 aa6.18□□□□□ -1.42
GTF3C4-201ENST00000372146 KRTAP10-4P60372 401 aaPredicted RBP6.18□□□□□ -1.42
GTF3C4-201ENST00000372146 DNAH9Q9NYC9 4486 aa6.18□□□□□ -1.42
GTF3C4-201ENST00000372146 LORP23490 312 aaPredicted RBP6.18□□□□□ -1.42
GTF3C4-201ENST00000372146 HECTD4Q9Y4D8 3996 aa6.18□□□□□ -1.42
GTF3C4-201ENST00000372146 KRTAP4-5Q9BYR2 181 aa6.15□□□□□ -1.43
GTF3C4-201ENST00000372146 KMT2AQ03164 3969 aa6.14□□□□□ -1.43
GTF3C4-201ENST00000372146 DNAH10Q8IVF4 4471 aa6.13□□□□□ -1.43
GTF3C4-201ENST00000372146 VPS13BQ7Z7G8 4022 aa6.06□□□□□ -1.44
GTF3C4-201ENST00000372146 DNAH6Q9C0G6 4158 aa6.03□□□□□ -1.44
GTF3C4-201ENST00000372146 PLECQ15149 4684 aaKnown RBP5.93□□□□□ -1.46
GTF3C4-201ENST00000372146 LCE3CQ5T5A8 94 aa5.92□□□□□ -1.46
GTF3C4-201ENST00000372146 KRTAP10-7P60409 375 aaPredicted RBP5.9□□□□□ -1.47
GTF3C4-201ENST00000372146 PRKDCP78527 4128 aaKnown RBP5.89□□□□□ -1.47
GTF3C4-201ENST00000372146 KRTAP19-5Q3LI72 72 aa5.83□□□□□ -1.48
GTF3C4-201ENST00000372146 VPS13DQ5THJ4 4388 aa5.83□□□□□ -1.48
GTF3C4-201ENST00000372146 STARD9Q9P2P6 4700 aa5.82□□□□□ -1.48
GTF3C4-201ENST00000372146 DNAH11Q96DT5 4516 aa5.81□□□□□ -1.48
GTF3C4-201ENST00000372146 FAT2Q9NYQ8 4349 aa5.8□□□□□ -1.48
GTF3C4-201ENST00000372146 DNAH5Q8TE73 4624 aa5.77□□□□□ -1.49
GTF3C4-201ENST00000372146 DYNC2H1Q8NCM8 4307 aaKnown RBP5.75□□□□□ -1.49
GTF3C4-201ENST00000372146 DNAH17Q9UFH2 4485 aa5.74□□□□□ -1.49
GTF3C4-201ENST00000372146 LCE3BQ5TA77 95 aa5.72□□□□□ -1.49
GTF3C4-201ENST00000372146 FLGP20930 4061 aaPredicted RBP5.71□□□□□ -1.5
GTF3C4-201ENST00000372146 DNAH8Q96JB1 4490 aa5.7□□□□□ -1.5
GTF3C4-201ENST00000372146 KRTAP12-4P60329 112 aa5.69□□□□□ -1.5
GTF3C4-201ENST00000372146 SPRR2FQ96RM1 72 aa5.66□□□□□ -1.5
GTF3C4-201ENST00000372146 KRTAP4-1Q9BYQ7 146 aa5.66□□□□□ -1.5
GTF3C4-201ENST00000372146 LRP1BQ9NZR2 4599 aa5.62□□□□□ -1.51
GTF3C4-201ENST00000372146 SPRR2GQ9BYE4 73 aa5.59□□□□□ -1.51
GTF3C4-201ENST00000372146 MT1HP80294 61 aa5.54□□□□□ -1.52
GTF3C4-201ENST00000372146 MT3P25713 68 aa5.48□□□□□ -1.53
GTF3C4-201ENST00000372146 FAT1Q14517 4588 aa5.45□□□□□ -1.54
GTF3C4-201ENST00000372146 MT2AP02795 61 aa5.42□□□□□ -1.54
GTF3C4-201ENST00000372146 KRTAP19-4Q3LI73 84 aa5.4□□□□□ -1.55
GTF3C4-201ENST00000372146 PKHD1P08F94 4074 aa5.38□□□□□ -1.55
GTF3C4-201ENST00000372146 MT1FP04733 61 aa5.34□□□□□ -1.55
GTF3C4-201ENST00000372146 MT1GP13640 62 aa5.34□□□□□ -1.55
GTF3C4-201ENST00000372146 SACSQ9NZJ4 4579 aa5.34□□□□□ -1.55
GTF3C4-201ENST00000372146 LCE3DQ9BYE3 92 aa5.33□□□□□ -1.56
GTF3C4-201ENST00000372146 DYNC1H1Q14204 4646 aaKnown RBP5.32□□□□□ -1.56
GTF3C4-201ENST00000372146 DNHD1Q96M86 4753 aa5.31□□□□□ -1.56
GTF3C4-201ENST00000372146 APOBP04114 4563 aaKnown RBP5.29□□□□□ -1.56
GTF3C4-201ENST00000372146 SPRR2EP22531 72 aa5.26□□□□□ -1.57
GTF3C4-201ENST00000372146 SPRR2BP35325 72 aa5.26□□□□□ -1.57
GTF3C4-201ENST00000372146 SPRR2AP35326 72 aa5.26□□□□□ -1.57
GTF3C4-201ENST00000372146 MYCBP2O75592 4640 aa5.23□□□□□ -1.57
GTF3C4-201ENST00000372146 LCE3EQ5T5B0 92 aa5.21□□□□□ -1.57
GTF3C4-201ENST00000372146 FAT3Q8TDW7 4589 aa5.19□□□□□ -1.58
GTF3C4-201ENST00000372146 PKHD1L1Q86WI1 4243 aa5.18□□□□□ -1.58
GTF3C4-201ENST00000372146 LRP1Q07954 4544 aaKnown RBP5.17□□□□□ -1.58
GTF3C4-201ENST00000372146 SPRR5A0A1B0GTR4 108 aa5.15□□□□□ -1.58
GTF3C4-201ENST00000372146 PRM1P04553 51 aa5.11□□□□□ -1.59
GTF3C4-201ENST00000372146 KRTAP17-1Q9BYP8 105 aa5.11□□□□□ -1.59
GTF3C4-201ENST00000372146 LCE2BO14633 110 aa5.1□□□□□ -1.59
GTF3C4-201ENST00000372146 HSPG2P98160 4391 aa5.1□□□□□ -1.59
GTF3C4-201ENST00000372146 SPRR2DP22532 72 aa5.09□□□□□ -1.59
GTF3C4-201ENST00000372146 RYR1P21817 5038 aa5.08□□□□□ -1.6
GTF3C4-201ENST00000372146 PKD1P98161 4303 aa5.07□□□□□ -1.6
GTF3C4-201ENST00000372146 TNXBP22105 4242 aa5.06□□□□□ -1.6
GTF3C4-201ENST00000372146 KRTAP19-1Q8IUB9 90 aa5.05□□□□□ -1.6
GTF3C4-201ENST00000372146 MT1XP80297 61 aa5.02□□□□□ -1.61
GTF3C4-201ENST00000372146 LPAP08519 4548 aa5.01□□□□□ -1.61
GTF3C4-201ENST00000372146 KRTAP19-8Q3LI54 63 aa4.99□□□□□ -1.61
GTF3C4-201ENST00000372146 RYR3Q15413 4870 aa4.88□□□□□ -1.63
GTF3C4-201ENST00000372146 KRTAP9-8Q9BYQ0 159 aa4.87□□□□□ -1.63
GTF3C4-201ENST00000372146 KRTAP4-8A0A0G2JLE6 195 aa4.87□□□□□ -1.63
GTF3C4-201ENST00000372146 KRTAP4-8Q9BYQ9 185 aa4.87□□□□□ -1.63
GTF3C4-201ENST00000372146 LRP2P98164 4655 aa4.86□□□□□ -1.63
GTF3C4-201ENST00000372146 MT1BP07438 61 aa4.85□□□□□ -1.63
GTF3C4-201ENST00000372146 HYDINQ4G0P3 5121 aa4.85□□□□□ -1.63
GTF3C4-201ENST00000372146 LCE2CQ5TA81 110 aa4.78□□□□□ -1.64
GTF3C4-201ENST00000372146 KRTAP4-7Q9BYR0 210 aa4.75□□□□□ -1.65
GTF3C4-201ENST00000372146 KRTAP9-3Q9BYQ3 159 aa4.73□□□□□ -1.65
GTF3C4-201ENST00000372146 MT1LQ93083 61 aa4.72□□□□□ -1.65
GTF3C4-201ENST00000372146 LCE1BQ5T7P3 118 aa4.68□□□□□ -1.66
GTF3C4-201ENST00000372146 KRTAP19-3Q7Z4W3 81 aa4.66□□□□□ -1.66
GTF3C4-201ENST00000372146 LCE2DQ5TA82 110 aaPredicted RBP4.65□□□□□ -1.66
GTF3C4-201ENST00000372146 LCE1DQ5T752 114 aa4.65□□□□□ -1.67
GTF3C4-201ENST00000372146 LOC100996750A0A140TA64 210 aa4.62□□□□□ -1.67
GTF3C4-201ENST00000372146 MT4P47944 62 aa4.62□□□□□ -1.67
GTF3C4-201ENST00000372146 RYR2Q92736 4967 aa4.58□□□□□ -1.68
GTF3C4-201ENST00000372146 KMT2CQ8NEZ4 4911 aaKnown RBP4.56□□□□□ -1.68
GTF3C4-201ENST00000372146 KIAA1109Q2LD37 5005 aa4.55□□□□□ -1.68
GTF3C4-201ENST00000372146 MT1EP04732 61 aa4.52□□□□□ -1.69
GTF3C4-201ENST00000372146 KRTAP19-2Q3LHN2 52 aa4.52□□□□□ -1.69
GTF3C4-201ENST00000372146 KRTAP4-9Q9BYQ8 210 aa4.43□□□□□ -1.7
GTF3C4-201ENST00000372146 HERC2O95714 4834 aa4.43□□□□□ -1.7
GTF3C4-201ENST00000372146 MT1MQ8N339 61 aa4.42□□□□□ -1.7
GTF3C4-201ENST00000372146 MUC17Q685J3 4493 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 149 ms