RNA–Protein interactions for RNA: ENST00000369530.5

CSDE1-204, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,774 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-204ENST00000369530 RPL37AP61513 92 aaKnown RBP3.98□□□□□ -1.77
CSDE1-204ENST00000369530 ACYP2P14621 99 aa3.98□□□□□ -1.77
CSDE1-204ENST00000369530 PCOTHQ58A44 107 aa3.97□□□□□ -1.77
CSDE1-204ENST00000369530 KRTAP19-2Q3LHN2 52 aa3.97□□□□□ -1.77
CSDE1-204ENST00000369530 SPINK6Q6UWN8 80 aa3.97□□□□□ -1.77
CSDE1-204ENST00000369530 Q96NJ1 140 aa3.97□□□□□ -1.77
CSDE1-204ENST00000369530 A0A1B0GU69 56 aa3.96□□□□□ -1.78
CSDE1-204ENST00000369530 A8MUU9 505 aa3.96□□□□□ -1.78
CSDE1-204ENST00000369530 LCE2AQ5TA79 106 aaPredicted RBP3.94□□□□□ -1.78
CSDE1-204ENST00000369530 LINC00483Q53H64 154 aa3.94□□□□□ -1.78
CSDE1-204ENST00000369530 C8orf17Q9NRJ1 99 aa3.93□□□□□ -1.78
CSDE1-204ENST00000369530 FLG2Q5D862 2391 aaPredicted RBP3.93□□□□□ -1.78
CSDE1-204ENST00000369530 IGLV7-43P04211 117 aa3.93□□□□□ -1.78
CSDE1-204ENST00000369530 SMR3BP02814 79 aaPredicted RBP3.91□□□□□ -1.78
CSDE1-204ENST00000369530 MRPL34Q9BQ48 92 aaKnown RBP3.89□□□□□ -1.79
CSDE1-204ENST00000369530 A0A1B0GVX0 72 aa3.88□□□□□ -1.79
CSDE1-204ENST00000369530 LCE2BO14633 110 aa3.87□□□□□ -1.79
CSDE1-204ENST00000369530 LINC00304Q8N9R0 145 aa3.87□□□□□ -1.79
CSDE1-204ENST00000369530 KRTAP13-2Q52LG2 175 aa3.86□□□□□ -1.79
CSDE1-204ENST00000369530 LCE2CQ5TA81 110 aa3.85□□□□□ -1.79
CSDE1-204ENST00000369530 KRTAP15-1Q3LI76 137 aa3.84□□□□□ -1.79
CSDE1-204ENST00000369530 SEC61BP60468 96 aaKnown RBP3.83□□□□□ -1.8
CSDE1-204ENST00000369530 Q5W150 140 aa3.83□□□□□ -1.8
CSDE1-204ENST00000369530 TYMSOSQ8TAI1 123 aa3.82□□□□□ -1.8
CSDE1-204ENST00000369530 C20orf166-AS1Q96NR2 134 aa3.82□□□□□ -1.8
CSDE1-204ENST00000369530 KRTAP16-1A8MUX0 517 aa3.82□□□□□ -1.8
CSDE1-204ENST00000369530 SSBP3-AS1Q7Z2R9 100 aa3.81□□□□□ -1.8
CSDE1-204ENST00000369530 H0YAA0 97 aa3.8□□□□□ -1.8
CSDE1-204ENST00000369530 IGKV2-30P06310 120 aa3.8□□□□□ -1.8
CSDE1-204ENST00000369530 KRTAP4-1Q9BYQ7 146 aa3.79□□□□□ -1.8
CSDE1-204ENST00000369530 DMBT1Q9UGM3 2413 aaPredicted RBP3.79□□□□□ -1.8
CSDE1-204ENST00000369530 RPS29P62273 56 aaKnown RBP3.78□□□□□ -1.8
CSDE1-204ENST00000369530 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
CSDE1-204ENST00000369530 IGKV2D-30A0A075B6S6 120 aa3.75□□□□□ -1.81
CSDE1-204ENST00000369530 K7ERS5 55 aa3.72□□□□□ -1.81
CSDE1-204ENST00000369530 NDUFAF8A1L188 74 aa3.71□□□□□ -1.82
CSDE1-204ENST00000369530 C9orf92A6NGG3 77 aa3.71□□□□□ -1.82
CSDE1-204ENST00000369530 SPINK1P00995 79 aa3.71□□□□□ -1.82
CSDE1-204ENST00000369530 TPRXLQ17RH7 258 aa3.71□□□□□ -1.82
CSDE1-204ENST00000369530 H1FX-AS1Q4G0G2 97 aa3.67□□□□□ -1.82
CSDE1-204ENST00000369530 XP32Q5T750 250 aa3.67□□□□□ -1.82
CSDE1-204ENST00000369530 A0A1B0GU33 70 aa3.65□□□□□ -1.83
CSDE1-204ENST00000369530 COX6B2Q6YFQ2 88 aa3.63□□□□□ -1.83
CSDE1-204ENST00000369530 SPINT4Q6UDR6 99 aa3.62□□□□□ -1.83
CSDE1-204ENST00000369530 SSPOA2VEC9 5147 aa3.61□□□□□ -1.83
CSDE1-204ENST00000369530 LORP23490 312 aaPredicted RBP3.6□□□□□ -1.83
CSDE1-204ENST00000369530 MT1HP80294 61 aa3.56□□□□□ -1.84
CSDE1-204ENST00000369530 CRIPTQ9P021 101 aa3.54□□□□□ -1.84
CSDE1-204ENST00000369530 RPL37P61927 97 aaKnown RBP3.53□□□□□ -1.84
CSDE1-204ENST00000369530 USH2AO75445 5202 aa3.52□□□□□ -1.85
CSDE1-204ENST00000369530 KRTAP9-8Q9BYQ0 159 aa3.51□□□□□ -1.85
CSDE1-204ENST00000369530 KRTAP9-2Q9BYQ4 174 aa3.49□□□□□ -1.85
CSDE1-204ENST00000369530 KRTAP3-1Q9BYR8 98 aa3.49□□□□□ -1.85
CSDE1-204ENST00000369530 LOC100996750A0A140TA64 210 aa3.47□□□□□ -1.85
CSDE1-204ENST00000369530 KRTAP4-6Q9BYQ5 205 aa3.47□□□□□ -1.85
CSDE1-204ENST00000369530 KRTAP10-6P60371 365 aaPredicted RBP3.45□□□□□ -1.86
CSDE1-204ENST00000369530 C10orf95Q9H7T3 257 aa3.44□□□□□ -1.86
CSDE1-204ENST00000369530 KRTAP13-4Q3LI77 160 aa3.41□□□□□ -1.86
CSDE1-204ENST00000369530 CAMK2N1Q7Z7J9 78 aa3.39□□□□□ -1.87
CSDE1-204ENST00000369530 KRTAP9-3Q9BYQ3 159 aa3.39□□□□□ -1.87
CSDE1-204ENST00000369530 S4R3F8 94 aa3.39□□□□□ -1.87
CSDE1-204ENST00000369530 PLAC4Q8WY50 150 aa3.34□□□□□ -1.87
CSDE1-204ENST00000369530 KRTAP12-1P59990 96 aa3.33□□□□□ -1.88
CSDE1-204ENST00000369530 KRTAP12-2P59991 146 aa3.33□□□□□ -1.88
CSDE1-204ENST00000369530 FCGBPQ9Y6R7 5405 aaPredicted RBP3.32□□□□□ -1.88
CSDE1-204ENST00000369530 KRTAP9-6A0A140TA67 174 aa3.32□□□□□ -1.88
CSDE1-204ENST00000369530 MT2AP02795 61 aa3.3□□□□□ -1.88
CSDE1-204ENST00000369530 PRO2289Q9P1D8 64 aa3.3□□□□□ -1.88
CSDE1-204ENST00000369530 A0A0D9SG42 100 aa3.28□□□□□ -1.88
CSDE1-204ENST00000369530 MT1FP04733 61 aa3.28□□□□□ -1.88
CSDE1-204ENST00000369530 SPRR5A0A1B0GTR4 108 aa3.27□□□□□ -1.89
CSDE1-204ENST00000369530 KRTAP23-1A1A580 65 aa3.26□□□□□ -1.89
CSDE1-204ENST00000369530 KRTAP19-6Q3LI70 58 aa3.24□□□□□ -1.89
CSDE1-204ENST00000369530 CRCT1Q9UGL9 99 aa3.23□□□□□ -1.89
CSDE1-204ENST00000369530 M0QZ58 72 aa3.21□□□□□ -1.9
CSDE1-204ENST00000369530 PP632Q6XCG6 107 aa3.2□□□□□ -1.9
CSDE1-204ENST00000369530 KRTAP19-1Q8IUB9 90 aa3.18□□□□□ -1.9
CSDE1-204ENST00000369530 INE1O15225 51 aa3.18□□□□□ -1.9
CSDE1-204ENST00000369530 KRTAP19-8Q3LI54 63 aa3.15□□□□□ -1.9
CSDE1-204ENST00000369530 R4GN34 69 aa3.15□□□□□ -1.9
CSDE1-204ENST00000369530 M0R2T5 61 aa3.15□□□□□ -1.91
CSDE1-204ENST00000369530 MACF1Q9UPN3 7388 aaKnown RBP3.13□□□□□ -1.91
CSDE1-204ENST00000369530 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.13□□□□□ -1.91
CSDE1-204ENST00000369530 MT1BP07438 61 aa3.12□□□□□ -1.91
CSDE1-204ENST00000369530 SPRR2GQ9BYE4 73 aa3.11□□□□□ -1.91
CSDE1-204ENST00000369530 KRTAP5-9P26371 169 aa3.07□□□□□ -1.92
CSDE1-204ENST00000369530 FSIP2Q5CZC0 6907 aa3.03□□□□□ -1.92
CSDE1-204ENST00000369530 MUC12Q9UKN1 5478 aa3.02□□□□□ -1.93
CSDE1-204ENST00000369530 SYNE2Q8WXH0 6885 aaKnown RBP2.99□□□□□ -1.93
CSDE1-204ENST00000369530 NEBP20929 6669 aa2.98□□□□□ -1.93
CSDE1-204ENST00000369530 KRTAP6-3Q3LI67 103 aa2.98□□□□□ -1.93
CSDE1-204ENST00000369530 KRTAP10-5P60370 271 aa2.97□□□□□ -1.93
CSDE1-204ENST00000369530 KRTAP4-8Q9BYQ9 185 aa2.95□□□□□ -1.94
CSDE1-204ENST00000369530 KRTAP10-10P60014 251 aa2.94□□□□□ -1.94
CSDE1-204ENST00000369530 KMT2DO14686 5537 aa2.94□□□□□ -1.94
CSDE1-204ENST00000369530 KRTAP9-7A8MTY7 169 aa2.94□□□□□ -1.94
CSDE1-204ENST00000369530 MDN1Q9NU22 5596 aa2.91□□□□□ -1.94
CSDE1-204ENST00000369530 MT1XP80297 61 aa2.91□□□□□ -1.94
CSDE1-204ENST00000369530 KRTAP10-12P60413 245 aa2.85□□□□□ -1.95
CSDE1-204ENST00000369530 TNP1P09430 55 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms