RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 SPRR2FQ96RM1 72 aa6.21□□□□□ -1.42
NUCKS1-201ENST00000367142 OTOGQ6ZRI0 2925 aa6.18□□□□□ -1.42
NUCKS1-201ENST00000367142 SRRM2Q9UQ35 2752 aaKnown RBP6.16□□□□□ -1.42
NUCKS1-201ENST00000367142 MT2AP02795 61 aa6.16□□□□□ -1.42
NUCKS1-201ENST00000367142 FBN1P35555 2871 aaKnown RBP6.13□□□□□ -1.43
NUCKS1-201ENST00000367142 KRTAP4-1Q9BYQ7 146 aa6.11□□□□□ -1.43
NUCKS1-201ENST00000367142 SPRR2GQ9BYE4 73 aa6.08□□□□□ -1.44
NUCKS1-201ENST00000367142 KRTAP19-5Q3LI72 72 aa6.04□□□□□ -1.44
NUCKS1-201ENST00000367142 COL7A1Q02388 2944 aa6.02□□□□□ -1.45
NUCKS1-201ENST00000367142 DNAH2Q9P225 4427 aa6.02□□□□□ -1.45
NUCKS1-201ENST00000367142 AKAP9Q99996 3911 aa5.99□□□□□ -1.45
NUCKS1-201ENST00000367142 MT1FP04733 61 aa5.98□□□□□ -1.45
NUCKS1-201ENST00000367142 LCE3CQ5T5A8 94 aa5.96□□□□□ -1.45
NUCKS1-201ENST00000367142 KRTAP19-4Q3LI73 84 aa5.94□□□□□ -1.46
NUCKS1-201ENST00000367142 SPRR2EP22531 72 aa5.91□□□□□ -1.46
NUCKS1-201ENST00000367142 SPRR2BP35325 72 aa5.91□□□□□ -1.46
NUCKS1-201ENST00000367142 SPRR2AP35326 72 aa5.91□□□□□ -1.46
NUCKS1-201ENST00000367142 DNAH1Q9P2D7 4330 aa5.9□□□□□ -1.47
NUCKS1-201ENST00000367142 DNAH5Q8TE73 4624 aa5.88□□□□□ -1.47
NUCKS1-201ENST00000367142 DNAH10Q8IVF4 4471 aa5.84□□□□□ -1.48
NUCKS1-201ENST00000367142 DNAH11Q96DT5 4516 aa5.81□□□□□ -1.48
NUCKS1-201ENST00000367142 ZNF469Q96JG9 3925 aaPredicted RBP5.79□□□□□ -1.48
NUCKS1-201ENST00000367142 TRRAPQ9Y4A5 3859 aa5.77□□□□□ -1.48
NUCKS1-201ENST00000367142 DNAH9Q9NYC9 4486 aa5.77□□□□□ -1.49
NUCKS1-201ENST00000367142 PLECQ15149 4684 aaKnown RBP5.77□□□□□ -1.49
NUCKS1-201ENST00000367142 SPRR2DP22532 72 aa5.74□□□□□ -1.49
NUCKS1-201ENST00000367142 LCE3BQ5TA77 95 aa5.65□□□□□ -1.5
NUCKS1-201ENST00000367142 LCE2BO14633 110 aa5.65□□□□□ -1.51
NUCKS1-201ENST00000367142 KRTAP12-4P60329 112 aa5.63□□□□□ -1.51
NUCKS1-201ENST00000367142 KRTAP19-8Q3LI54 63 aa5.59□□□□□ -1.51
NUCKS1-201ENST00000367142 DNAH17Q9UFH2 4485 aa5.56□□□□□ -1.52
NUCKS1-201ENST00000367142 DYNC1H1Q14204 4646 aaKnown RBP5.55□□□□□ -1.52
NUCKS1-201ENST00000367142 FAT1Q14517 4588 aa5.54□□□□□ -1.52
NUCKS1-201ENST00000367142 MT1GP13640 62 aa5.53□□□□□ -1.52
NUCKS1-201ENST00000367142 SACSQ9NZJ4 4579 aa5.47□□□□□ -1.53
NUCKS1-201ENST00000367142 FAT2Q9NYQ8 4349 aa5.46□□□□□ -1.53
NUCKS1-201ENST00000367142 HERC1Q15751 4861 aa5.46□□□□□ -1.53
NUCKS1-201ENST00000367142 KRTAP19-1Q8IUB9 90 aa5.44□□□□□ -1.54
NUCKS1-201ENST00000367142 MT1XP80297 61 aa5.44□□□□□ -1.54
NUCKS1-201ENST00000367142 VPS13DQ5THJ4 4388 aa5.44□□□□□ -1.54
NUCKS1-201ENST00000367142 LRP1BQ9NZR2 4599 aa5.41□□□□□ -1.54
NUCKS1-201ENST00000367142 LRP1Q07954 4544 aaKnown RBP5.37□□□□□ -1.55
NUCKS1-201ENST00000367142 DNAH8Q96JB1 4490 aa5.37□□□□□ -1.55
NUCKS1-201ENST00000367142 DYNC2H1Q8NCM8 4307 aaKnown RBP5.36□□□□□ -1.55
NUCKS1-201ENST00000367142 CSMD3Q7Z407 3707 aa5.35□□□□□ -1.55
NUCKS1-201ENST00000367142 RYR1P21817 5038 aa5.35□□□□□ -1.55
NUCKS1-201ENST00000367142 LCE3DQ9BYE3 92 aa5.34□□□□□ -1.55
NUCKS1-201ENST00000367142 MT1BP07438 61 aa5.34□□□□□ -1.55
NUCKS1-201ENST00000367142 DNAH3Q8TD57 4116 aa5.32□□□□□ -1.56
NUCKS1-201ENST00000367142 ANK2Q01484 3957 aa5.31□□□□□ -1.56
NUCKS1-201ENST00000367142 LCE2CQ5TA81 110 aa5.31□□□□□ -1.56
NUCKS1-201ENST00000367142 APOBP04114 4563 aaKnown RBP5.27□□□□□ -1.57
NUCKS1-201ENST00000367142 LCE3EQ5T5B0 92 aa5.26□□□□□ -1.57
NUCKS1-201ENST00000367142 KRTAP9-8Q9BYQ0 159 aa5.26□□□□□ -1.57
NUCKS1-201ENST00000367142 KRTAP4-8A0A0G2JLE6 195 aa5.25□□□□□ -1.57
NUCKS1-201ENST00000367142 KRTAP4-8Q9BYQ9 185 aa5.25□□□□□ -1.57
NUCKS1-201ENST00000367142 LCE2DQ5TA82 110 aaPredicted RBP5.25□□□□□ -1.57
NUCKS1-201ENST00000367142 FAT3Q8TDW7 4589 aa5.22□□□□□ -1.57
NUCKS1-201ENST00000367142 RYR3Q15413 4870 aa5.22□□□□□ -1.57
NUCKS1-201ENST00000367142 LYSTQ99698 3801 aa5.21□□□□□ -1.58
NUCKS1-201ENST00000367142 KRTAP9-3Q9BYQ3 159 aa5.2□□□□□ -1.58
NUCKS1-201ENST00000367142 DNHD1Q96M86 4753 aa5.19□□□□□ -1.58
NUCKS1-201ENST00000367142 KRTAP19-3Q7Z4W3 81 aa5.17□□□□□ -1.58
NUCKS1-201ENST00000367142 HSPG2P98160 4391 aa5.16□□□□□ -1.58
NUCKS1-201ENST00000367142 CMYA5Q8N3K9 4069 aa5.16□□□□□ -1.58
NUCKS1-201ENST00000367142 STARD9Q9P2P6 4700 aa5.12□□□□□ -1.59
NUCKS1-201ENST00000367142 DNAH7Q8WXX0 4024 aa5.09□□□□□ -1.59
NUCKS1-201ENST00000367142 DNAH6Q9C0G6 4158 aa5.09□□□□□ -1.59
NUCKS1-201ENST00000367142 KRTAP17-1Q9BYP8 105 aa5.07□□□□□ -1.6
NUCKS1-201ENST00000367142 PRKDCP78527 4128 aaKnown RBP5.07□□□□□ -1.6
NUCKS1-201ENST00000367142 FRAS1Q86XX4 4008 aa5.04□□□□□ -1.6
NUCKS1-201ENST00000367142 MT1LQ93083 61 aa5.04□□□□□ -1.6
NUCKS1-201ENST00000367142 MYCBP2O75592 4640 aa5.03□□□□□ -1.6
NUCKS1-201ENST00000367142 MT4P47944 62 aa5.03□□□□□ -1.6
NUCKS1-201ENST00000367142 MT3P25713 68 aa5.01□□□□□ -1.61
NUCKS1-201ENST00000367142 SPRR5A0A1B0GTR4 108 aa5.01□□□□□ -1.61
NUCKS1-201ENST00000367142 VPS13BQ7Z7G8 4022 aa5.01□□□□□ -1.61
NUCKS1-201ENST00000367142 MT1EP04732 61 aa4.97□□□□□ -1.61
NUCKS1-201ENST00000367142 RYR2Q92736 4967 aa4.97□□□□□ -1.61
NUCKS1-201ENST00000367142 PKHD1L1Q86WI1 4243 aa4.93□□□□□ -1.62
NUCKS1-201ENST00000367142 KRTAP4-7Q9BYR0 210 aa4.92□□□□□ -1.62
NUCKS1-201ENST00000367142 PKD1P98161 4303 aa4.9□□□□□ -1.63
NUCKS1-201ENST00000367142 LCE1BQ5T7P3 118 aa4.87□□□□□ -1.63
NUCKS1-201ENST00000367142 MT1MQ8N339 61 aa4.87□□□□□ -1.63
NUCKS1-201ENST00000367142 HECTD4Q9Y4D8 3996 aa4.85□□□□□ -1.63
NUCKS1-201ENST00000367142 KRTAP9-2Q9BYQ4 174 aa4.84□□□□□ -1.63
NUCKS1-201ENST00000367142 LCE1DQ5T752 114 aa4.83□□□□□ -1.64
NUCKS1-201ENST00000367142 KMT2AQ03164 3969 aa4.81□□□□□ -1.64
NUCKS1-201ENST00000367142 KRTAP19-6Q3LI70 58 aa4.81□□□□□ -1.64
NUCKS1-201ENST00000367142 PRM1P04553 51 aa4.79□□□□□ -1.64
NUCKS1-201ENST00000367142 BIRC6Q9NR09 4857 aa4.78□□□□□ -1.64
NUCKS1-201ENST00000367142 HERC2O95714 4834 aa4.78□□□□□ -1.65
NUCKS1-201ENST00000367142 LOC100996750A0A140TA64 210 aa4.69□□□□□ -1.66
NUCKS1-201ENST00000367142 PCLOQ9Y6V0 5065 aa4.68□□□□□ -1.66
NUCKS1-201ENST00000367142 KRTAP9-6A0A140TA67 174 aa4.68□□□□□ -1.66
NUCKS1-201ENST00000367142 KRTAP20-1Q3LI63 56 aa4.65□□□□□ -1.66
NUCKS1-201ENST00000367142 KIAA1109Q2LD37 5005 aa4.65□□□□□ -1.67
NUCKS1-201ENST00000367142 LCE5AQ5TCM9 118 aa4.63□□□□□ -1.67
NUCKS1-201ENST00000367142 KRTAP19-2Q3LHN2 52 aa4.62□□□□□ -1.67
NUCKS1-201ENST00000367142 KRTAP4-3Q9BYR4 195 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms