RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 KRTAP19-4Q3LI73 84 aa3.62□□□□□ -1.83
VPS13A-203ENST00000360280 AKAP9Q99996 3911 aa3.62□□□□□ -1.83
VPS13A-203ENST00000360280 LCE3CQ5T5A8 94 aa3.61□□□□□ -1.83
VPS13A-203ENST00000360280 BSNQ9UPA5 3926 aa3.58□□□□□ -1.84
VPS13A-203ENST00000360280 SPRR2GQ9BYE4 73 aa3.55□□□□□ -1.84
VPS13A-203ENST00000360280 KRTAP4-5Q9BYR2 181 aa3.52□□□□□ -1.85
VPS13A-203ENST00000360280 KRTAP19-5Q3LI72 72 aa3.5□□□□□ -1.85
VPS13A-203ENST00000360280 SPRR2FQ96RM1 72 aa3.5□□□□□ -1.85
VPS13A-203ENST00000360280 ALMS1Q8TCU4 4167 aa3.46□□□□□ -1.86
VPS13A-203ENST00000360280 MT1HP80294 61 aa3.44□□□□□ -1.86
VPS13A-203ENST00000360280 ZNF469Q96JG9 3925 aaPredicted RBP3.43□□□□□ -1.86
VPS13A-203ENST00000360280 MT2AP02795 61 aa3.39□□□□□ -1.87
VPS13A-203ENST00000360280 LCE3BQ5TA77 95 aa3.37□□□□□ -1.87
VPS13A-203ENST00000360280 KRTAP12-4P60329 112 aa3.37□□□□□ -1.87
VPS13A-203ENST00000360280 KRTAP4-1Q9BYQ7 146 aa3.3□□□□□ -1.88
VPS13A-203ENST00000360280 LYSTQ99698 3801 aa3.29□□□□□ -1.88
VPS13A-203ENST00000360280 MT1FP04733 61 aa3.28□□□□□ -1.88
VPS13A-203ENST00000360280 SPRR2EP22531 72 aa3.26□□□□□ -1.89
VPS13A-203ENST00000360280 SPRR2BP35325 72 aa3.26□□□□□ -1.89
VPS13A-203ENST00000360280 SPRR2AP35326 72 aa3.26□□□□□ -1.89
VPS13A-203ENST00000360280 LCE3DQ9BYE3 92 aa3.24□□□□□ -1.89
VPS13A-203ENST00000360280 HUWE1Q7Z6Z7 4374 aaKnown RBP3.21□□□□□ -1.89
VPS13A-203ENST00000360280 LCE2BO14633 110 aa3.21□□□□□ -1.9
VPS13A-203ENST00000360280 ANK2Q01484 3957 aa3.2□□□□□ -1.9
VPS13A-203ENST00000360280 SPRR2DP22532 72 aa3.18□□□□□ -1.9
VPS13A-203ENST00000360280 LCE3EQ5T5B0 92 aa3.18□□□□□ -1.9
VPS13A-203ENST00000360280 MT1GP13640 62 aa3.18□□□□□ -1.9
VPS13A-203ENST00000360280 SPRR5A0A1B0GTR4 108 aa3.17□□□□□ -1.9
VPS13A-203ENST00000360280 DNAH7Q8WXX0 4024 aa3.15□□□□□ -1.9
VPS13A-203ENST00000360280 CMYA5Q8N3K9 4069 aa3.15□□□□□ -1.91
VPS13A-203ENST00000360280 FRAS1Q86XX4 4008 aa3.14□□□□□ -1.91
VPS13A-203ENST00000360280 KRTAP19-8Q3LI54 63 aa3.14□□□□□ -1.91
VPS13A-203ENST00000360280 DNAH2Q9P225 4427 aa3.14□□□□□ -1.91
VPS13A-203ENST00000360280 VPS13BQ7Z7G8 4022 aa3.13□□□□□ -1.91
VPS13A-203ENST00000360280 KMT2AQ03164 3969 aa3.13□□□□□ -1.91
VPS13A-203ENST00000360280 DNAH3Q8TD57 4116 aa3.12□□□□□ -1.91
VPS13A-203ENST00000360280 ANK3Q12955 4377 aaKnown RBP3.12□□□□□ -1.91
VPS13A-203ENST00000360280 MT3P25713 68 aa3.11□□□□□ -1.91
VPS13A-203ENST00000360280 MT1XP80297 61 aa3.09□□□□□ -1.91
VPS13A-203ENST00000360280 KRTAP19-1Q8IUB9 90 aa3.08□□□□□ -1.92
VPS13A-203ENST00000360280 DNAH6Q9C0G6 4158 aa3.08□□□□□ -1.92
VPS13A-203ENST00000360280 HECTD4Q9Y4D8 3996 aa3.04□□□□□ -1.92
VPS13A-203ENST00000360280 MT1LQ93083 61 aa2.98□□□□□ -1.93
VPS13A-203ENST00000360280 PRM1P04553 51 aa2.97□□□□□ -1.93
VPS13A-203ENST00000360280 LCE2CQ5TA81 110 aa2.97□□□□□ -1.93
VPS13A-203ENST00000360280 KRTAP19-3Q7Z4W3 81 aa2.94□□□□□ -1.94
VPS13A-203ENST00000360280 DNAH1Q9P2D7 4330 aa2.93□□□□□ -1.94
VPS13A-203ENST00000360280 MT1BP07438 61 aa2.92□□□□□ -1.94
VPS13A-203ENST00000360280 KRTAP4-8A0A0G2JLE6 195 aa2.9□□□□□ -1.95
VPS13A-203ENST00000360280 KRTAP4-8Q9BYQ9 185 aa2.9□□□□□ -1.95
VPS13A-203ENST00000360280 LCE2DQ5TA82 110 aaPredicted RBP2.89□□□□□ -1.95
VPS13A-203ENST00000360280 FAT2Q9NYQ8 4349 aa2.87□□□□□ -1.95
VPS13A-203ENST00000360280 KRTAP9-8Q9BYQ0 159 aa2.86□□□□□ -1.95
VPS13A-203ENST00000360280 DNAH8Q96JB1 4490 aa2.85□□□□□ -1.95
VPS13A-203ENST00000360280 MT1EP04732 61 aa2.83□□□□□ -1.96
VPS13A-203ENST00000360280 DNAH10Q8IVF4 4471 aa2.81□□□□□ -1.96
VPS13A-203ENST00000360280 KRTAP9-3Q9BYQ3 159 aa2.79□□□□□ -1.96
VPS13A-203ENST00000360280 LCE1DQ5T752 114 aa2.79□□□□□ -1.96
VPS13A-203ENST00000360280 MT4P47944 62 aa2.78□□□□□ -1.96
VPS13A-203ENST00000360280 LCE1BQ5T7P3 118 aa2.78□□□□□ -1.96
VPS13A-203ENST00000360280 DNAH9Q9NYC9 4486 aa2.78□□□□□ -1.97
VPS13A-203ENST00000360280 STARD9Q9P2P6 4700 aa2.77□□□□□ -1.97
VPS13A-203ENST00000360280 PRKDCP78527 4128 aaKnown RBP2.77□□□□□ -1.97
VPS13A-203ENST00000360280 MT1MQ8N339 61 aa2.77□□□□□ -1.97
VPS13A-203ENST00000360280 KRTAP4-7Q9BYR0 210 aa2.76□□□□□ -1.97
VPS13A-203ENST00000360280 DNAH5Q8TE73 4624 aa2.75□□□□□ -1.97
VPS13A-203ENST00000360280 DYNC2H1Q8NCM8 4307 aaKnown RBP2.74□□□□□ -1.97
VPS13A-203ENST00000360280 FLGP20930 4061 aaPredicted RBP2.72□□□□□ -1.97
VPS13A-203ENST00000360280 VPS13DQ5THJ4 4388 aa2.72□□□□□ -1.97
VPS13A-203ENST00000360280 DNAH11Q96DT5 4516 aa2.69□□□□□ -1.98
VPS13A-203ENST00000360280 FAT1Q14517 4588 aa2.68□□□□□ -1.98
VPS13A-203ENST00000360280 LOC100996750A0A140TA64 210 aa2.65□□□□□ -1.98
VPS13A-203ENST00000360280 DNAH17Q9UFH2 4485 aa2.65□□□□□ -1.98
VPS13A-203ENST00000360280 KRTAP2-3P0C7H8 128 aa2.64□□□□□ -1.99
VPS13A-203ENST00000360280 KRTAP2-4Q9BYR9 128 aa2.64□□□□□ -1.99
VPS13A-203ENST00000360280 KRTAP2-1Q9BYU5 128 aa2.64□□□□□ -1.99
VPS13A-203ENST00000360280 PKHD1L1Q86WI1 4243 aa2.63□□□□□ -1.99
VPS13A-203ENST00000360280 MT1AP04731 61 aa2.61□□□□□ -1.99
VPS13A-203ENST00000360280 LCE5AQ5TCM9 118 aa2.61□□□□□ -1.99
VPS13A-203ENST00000360280 LRP1Q07954 4544 aaKnown RBP2.61□□□□□ -1.99
VPS13A-203ENST00000360280 PLECQ15149 4684 aaKnown RBP2.6□□□□□ -1.99
VPS13A-203ENST00000360280 KRTAP19-6Q3LI70 58 aa2.58□□□□□ -2
VPS13A-203ENST00000360280 PKHD1P08F94 4074 aa2.57□□□□□ -2
VPS13A-203ENST00000360280 KRTAP6-2Q3LI66 62 aa2.54□□□□□ -2
VPS13A-203ENST00000360280 LRP1BQ9NZR2 4599 aa2.54□□□□□ -2
VPS13A-203ENST00000360280 KRTAP4-3Q9BYR4 195 aa2.54□□□□□ -2
VPS13A-203ENST00000360280 PKD1P98161 4303 aa2.5□□□□□ -2.01
VPS13A-203ENST00000360280 KRTAP4-9Q9BYQ8 210 aa2.5□□□□□ -2.01
VPS13A-203ENST00000360280 FAT3Q8TDW7 4589 aa2.49□□□□□ -2.01
VPS13A-203ENST00000360280 HSPG2P98160 4391 aa2.48□□□□□ -2.01
VPS13A-203ENST00000360280 LCE1CQ5T751 118 aa2.47□□□□□ -2.01
VPS13A-203ENST00000360280 LCE1EQ5T753 118 aa2.47□□□□□ -2.01
VPS13A-203ENST00000360280 LCE1FQ5T754 118 aa2.47□□□□□ -2.01
VPS13A-203ENST00000360280 LCE1AQ5T7P2 110 aa2.47□□□□□ -2.01
VPS13A-203ENST00000360280 APOBP04114 4563 aaKnown RBP2.47□□□□□ -2.01
VPS13A-203ENST00000360280 KRTAP17-1Q9BYP8 105 aa2.47□□□□□ -2.01
VPS13A-203ENST00000360280 KRTAP19-7Q3SYF9 63 aa2.46□□□□□ -2.02
VPS13A-203ENST00000360280 KRTAP19-2Q3LHN2 52 aa2.42□□□□□ -2.02
VPS13A-203ENST00000360280 KRTAP9-2Q9BYQ4 174 aa2.4□□□□□ -2.03
VPS13A-203ENST00000360280 DYNC1H1Q14204 4646 aaKnown RBP2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms