RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 FRAS1Q86XX4 4008 aa3.01□□□□□ -1.93
VPS13B-202ENST00000357162 CUBNO60494 3623 aa2.97□□□□□ -1.93
VPS13B-202ENST00000357162 FLGP20930 4061 aaPredicted RBP2.97□□□□□ -1.93
VPS13B-202ENST00000357162 RYR1P21817 5038 aa2.96□□□□□ -1.94
VPS13B-202ENST00000357162 KRTAP10-12P60413 245 aa2.95□□□□□ -1.94
VPS13B-202ENST00000357162 KRTAP3-3Q9BYR6 98 aa2.95□□□□□ -1.94
VPS13B-202ENST00000357162 DNAH10Q8IVF4 4471 aa2.95□□□□□ -1.94
VPS13B-202ENST00000357162 VPS13BQ7Z7G8 4022 aa2.93□□□□□ -1.94
VPS13B-202ENST00000357162 DNAH6Q9C0G6 4158 aa2.9□□□□□ -1.94
VPS13B-202ENST00000357162 KRTAP12-3P60328 96 aa2.89□□□□□ -1.95
VPS13B-202ENST00000357162 HUWE1Q7Z6Z7 4374 aaKnown RBP2.87□□□□□ -1.95
VPS13B-202ENST00000357162 KMT2AQ03164 3969 aa2.87□□□□□ -1.95
VPS13B-202ENST00000357162 DNAH11Q96DT5 4516 aa2.84□□□□□ -1.96
VPS13B-202ENST00000357162 MT1HL1P0DM35 61 aa2.8□□□□□ -1.96
VPS13B-202ENST00000357162 KRTAP10-4P60372 401 aaPredicted RBP2.8□□□□□ -1.96
VPS13B-202ENST00000357162 DNAH2Q9P225 4427 aa2.78□□□□□ -1.96
VPS13B-202ENST00000357162 CSMD3Q7Z407 3707 aa2.76□□□□□ -1.97
VPS13B-202ENST00000357162 VPS13DQ5THJ4 4388 aa2.76□□□□□ -1.97
VPS13B-202ENST00000357162 PRKDCP78527 4128 aaKnown RBP2.75□□□□□ -1.97
VPS13B-202ENST00000357162 DNAH9Q9NYC9 4486 aa2.7□□□□□ -1.98
VPS13B-202ENST00000357162 SPRR2GQ9BYE4 73 aa2.7□□□□□ -1.98
VPS13B-202ENST00000357162 LRP1Q07954 4544 aaKnown RBP2.68□□□□□ -1.98
VPS13B-202ENST00000357162 KRTAP8-1Q8IUC2 63 aa2.68□□□□□ -1.98
VPS13B-202ENST00000357162 DNAH17Q9UFH2 4485 aa2.68□□□□□ -1.98
VPS13B-202ENST00000357162 LCE3AQ5TA76 89 aa2.66□□□□□ -1.98
VPS13B-202ENST00000357162 PKHD1P08F94 4074 aa2.65□□□□□ -1.99
VPS13B-202ENST00000357162 PLECQ15149 4684 aaKnown RBP2.64□□□□□ -1.99
VPS13B-202ENST00000357162 DYNC2H1Q8NCM8 4307 aaKnown RBP2.64□□□□□ -1.99
VPS13B-202ENST00000357162 SPRR5A0A1B0GTR4 108 aa2.61□□□□□ -1.99
VPS13B-202ENST00000357162 PCLOQ9Y6V0 5065 aa2.61□□□□□ -1.99
VPS13B-202ENST00000357162 HYDINQ4G0P3 5121 aa2.61□□□□□ -1.99
VPS13B-202ENST00000357162 HSPG2P98160 4391 aa2.59□□□□□ -1.99
VPS13B-202ENST00000357162 DNAH8Q96JB1 4490 aa2.58□□□□□ -2
VPS13B-202ENST00000357162 DYNC1H1Q14204 4646 aaKnown RBP2.57□□□□□ -2
VPS13B-202ENST00000357162 DNAH5Q8TE73 4624 aa2.57□□□□□ -2
VPS13B-202ENST00000357162 LCE3CQ5T5A8 94 aa2.55□□□□□ -2
VPS13B-202ENST00000357162 DNHD1Q96M86 4753 aa2.54□□□□□ -2
VPS13B-202ENST00000357162 PKD1P98161 4303 aa2.51□□□□□ -2.01
VPS13B-202ENST00000357162 KRTAP10-5P60370 271 aa2.5□□□□□ -2.01
VPS13B-202ENST00000357162 LORP23490 312 aaPredicted RBP2.49□□□□□ -2.01
VPS13B-202ENST00000357162 PKHD1L1Q86WI1 4243 aa2.47□□□□□ -2.01
VPS13B-202ENST00000357162 KRTAP19-8Q3LI54 63 aa2.47□□□□□ -2.01
VPS13B-202ENST00000357162 SACSQ9NZJ4 4579 aa2.46□□□□□ -2.02
VPS13B-202ENST00000357162 APOBP04114 4563 aaKnown RBP2.44□□□□□ -2.02
VPS13B-202ENST00000357162 FAT3Q8TDW7 4589 aa2.44□□□□□ -2.02
VPS13B-202ENST00000357162 STARD9Q9P2P6 4700 aa2.43□□□□□ -2.02
VPS13B-202ENST00000357162 FAT2Q9NYQ8 4349 aa2.42□□□□□ -2.02
VPS13B-202ENST00000357162 MT3P25713 68 aa2.41□□□□□ -2.02
VPS13B-202ENST00000357162 KRTAP10-7P60409 375 aaPredicted RBP2.41□□□□□ -2.02
VPS13B-202ENST00000357162 RYR3Q15413 4870 aa2.41□□□□□ -2.02
VPS13B-202ENST00000357162 MT2AP02795 61 aa2.4□□□□□ -2.03
VPS13B-202ENST00000357162 LRP1BQ9NZR2 4599 aa2.39□□□□□ -2.03
VPS13B-202ENST00000357162 KRTAP19-5Q3LI72 72 aa2.38□□□□□ -2.03
VPS13B-202ENST00000357162 MT1HP80294 61 aa2.37□□□□□ -2.03
VPS13B-202ENST00000357162 EPPK1P58107 5090 aaKnown RBP2.36□□□□□ -2.03
VPS13B-202ENST00000357162 MYCBP2O75592 4640 aa2.36□□□□□ -2.03
VPS13B-202ENST00000357162 CRCT1Q9UGL9 99 aa2.33□□□□□ -2.04
VPS13B-202ENST00000357162 RYR2Q92736 4967 aa2.33□□□□□ -2.04
VPS13B-202ENST00000357162 FAT1Q14517 4588 aa2.33□□□□□ -2.04
VPS13B-202ENST00000357162 HERC1Q15751 4861 aa2.32□□□□□ -2.04
VPS13B-202ENST00000357162 KRTAP12-4P60329 112 aa2.31□□□□□ -2.04
VPS13B-202ENST00000357162 KRTAP19-1Q8IUB9 90 aa2.31□□□□□ -2.04
VPS13B-202ENST00000357162 MT1GP13640 62 aa2.3□□□□□ -2.04
VPS13B-202ENST00000357162 TNXBP22105 4242 aa2.3□□□□□ -2.04
VPS13B-202ENST00000357162 MT1FP04733 61 aa2.3□□□□□ -2.04
VPS13B-202ENST00000357162 KRTAP4-5Q9BYR2 181 aa2.29□□□□□ -2.04
VPS13B-202ENST00000357162 MT1XP80297 61 aa2.29□□□□□ -2.04
VPS13B-202ENST00000357162 KRTAP4-1Q9BYQ7 146 aa2.28□□□□□ -2.04
VPS13B-202ENST00000357162 ABCA13Q86UQ4 5058 aa2.28□□□□□ -2.04
VPS13B-202ENST00000357162 UBR4Q5T4S7 5183 aa2.27□□□□□ -2.05
VPS13B-202ENST00000357162 BIRC6Q9NR09 4857 aa2.26□□□□□ -2.05
VPS13B-202ENST00000357162 MT1LQ93083 61 aa2.25□□□□□ -2.05
VPS13B-202ENST00000357162 LCE3EQ5T5B0 92 aa2.24□□□□□ -2.05
VPS13B-202ENST00000357162 HERC2O95714 4834 aa2.24□□□□□ -2.05
VPS13B-202ENST00000357162 LCE3DQ9BYE3 92 aa2.23□□□□□ -2.05
VPS13B-202ENST00000357162 SPRR2FQ96RM1 72 aa2.22□□□□□ -2.05
VPS13B-202ENST00000357162 RNF213Q63HN8 5207 aa2.22□□□□□ -2.05
VPS13B-202ENST00000357162 KMT2CQ8NEZ4 4911 aaKnown RBP2.21□□□□□ -2.06
VPS13B-202ENST00000357162 KIAA1109Q2LD37 5005 aa2.2□□□□□ -2.06
VPS13B-202ENST00000357162 MT1BP07438 61 aa2.16□□□□□ -2.06
VPS13B-202ENST00000357162 MT1EP04732 61 aa2.16□□□□□ -2.06
VPS13B-202ENST00000357162 HMCN2Q8NDA2 5059 aa2.16□□□□□ -2.06
VPS13B-202ENST00000357162 MUC17Q685J3 4493 aa2.14□□□□□ -2.07
VPS13B-202ENST00000357162 KRTAP2-3P0C7H8 128 aa2.13□□□□□ -2.07
VPS13B-202ENST00000357162 KRTAP2-4Q9BYR9 128 aa2.13□□□□□ -2.07
VPS13B-202ENST00000357162 KRTAP2-1Q9BYU5 128 aa2.13□□□□□ -2.07
VPS13B-202ENST00000357162 KRTAP19-3Q7Z4W3 81 aa2.13□□□□□ -2.07
VPS13B-202ENST00000357162 KRTAP9-8Q9BYQ0 159 aa2.12□□□□□ -2.07
VPS13B-202ENST00000357162 KRTAP9-3Q9BYQ3 159 aa2.12□□□□□ -2.07
VPS13B-202ENST00000357162 LRP2P98164 4655 aa2.1□□□□□ -2.07
VPS13B-202ENST00000357162 LCE3BQ5TA77 95 aa2.1□□□□□ -2.07
VPS13B-202ENST00000357162 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
VPS13B-202ENST00000357162 MUC12Q9UKN1 5478 aa2.09□□□□□ -2.08
VPS13B-202ENST00000357162 SPRR2AP35326 72 aa2.08□□□□□ -2.08
VPS13B-202ENST00000357162 LCE2BO14633 110 aa2.08□□□□□ -2.08
VPS13B-202ENST00000357162 MT1AP04731 61 aa2.07□□□□□ -2.08
VPS13B-202ENST00000357162 SPRR2BP35325 72 aa2.05□□□□□ -2.08
VPS13B-202ENST00000357162 KRTAP17-1Q9BYP8 105 aa2.05□□□□□ -2.08
VPS13B-202ENST00000357162 MT1MQ8N339 61 aa2.04□□□□□ -2.08
VPS13B-202ENST00000357162 LCE2CQ5TA81 110 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms