RNA–Protein interactions for RNA: ENST00000356435.9

PTPRD-202, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 9,472 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-202ENST00000356435 TRRAPQ9Y4A5 3859 aa2.4□□□□□ -2.03
PTPRD-202ENST00000356435 VPS13DQ5THJ4 4388 aa2.39□□□□□ -2.03
PTPRD-202ENST00000356435 HUWE1Q7Z6Z7 4374 aaKnown RBP2.39□□□□□ -2.03
PTPRD-202ENST00000356435 NBPF19A0A087WUL8 3843 aa2.38□□□□□ -2.03
PTPRD-202ENST00000356435 DNAH8Q96JB1 4490 aa2.38□□□□□ -2.03
PTPRD-202ENST00000356435 COL7A1Q02388 2944 aa2.37□□□□□ -2.03
PTPRD-202ENST00000356435 DNAH5Q8TE73 4624 aa2.37□□□□□ -2.03
PTPRD-202ENST00000356435 DNAH2Q9P225 4427 aa2.37□□□□□ -2.03
PTPRD-202ENST00000356435 LCE3AQ5TA76 89 aa2.37□□□□□ -2.03
PTPRD-202ENST00000356435 KRTAP4-5Q9BYR2 181 aa2.36□□□□□ -2.03
PTPRD-202ENST00000356435 VPS13CQ709C8 3753 aa2.36□□□□□ -2.03
PTPRD-202ENST00000356435 DYNC2H1Q8NCM8 4307 aaKnown RBP2.35□□□□□ -2.03
PTPRD-202ENST00000356435 DNAH3Q8TD57 4116 aa2.35□□□□□ -2.03
PTPRD-202ENST00000356435 SACSQ9NZJ4 4579 aa2.34□□□□□ -2.03
PTPRD-202ENST00000356435 LRP1BQ9NZR2 4599 aa2.34□□□□□ -2.03
PTPRD-202ENST00000356435 KRTAP10-5P60370 271 aa2.33□□□□□ -2.04
PTPRD-202ENST00000356435 DNAH9Q9NYC9 4486 aa2.33□□□□□ -2.04
PTPRD-202ENST00000356435 SPRR5A0A1B0GTR4 108 aa2.32□□□□□ -2.04
PTPRD-202ENST00000356435 LORP23490 312 aaPredicted RBP2.31□□□□□ -2.04
PTPRD-202ENST00000356435 DYNC1H1Q14204 4646 aaKnown RBP2.31□□□□□ -2.04
PTPRD-202ENST00000356435 RYR1P21817 5038 aa2.3□□□□□ -2.04
PTPRD-202ENST00000356435 CSMD2Q7Z408 3487 aa2.3□□□□□ -2.04
PTPRD-202ENST00000356435 RYR2Q92736 4967 aa2.3□□□□□ -2.04
PTPRD-202ENST00000356435 STARD9Q9P2P6 4700 aa2.29□□□□□ -2.04
PTPRD-202ENST00000356435 KRTAP10-7P60409 375 aaPredicted RBP2.24□□□□□ -2.05
PTPRD-202ENST00000356435 ZNF469Q96JG9 3925 aaPredicted RBP2.24□□□□□ -2.05
PTPRD-202ENST00000356435 APOBP04114 4563 aaKnown RBP2.23□□□□□ -2.05
PTPRD-202ENST00000356435 KIAA1109Q2LD37 5005 aa2.22□□□□□ -2.05
PTPRD-202ENST00000356435 ANK2Q01484 3957 aa2.22□□□□□ -2.05
PTPRD-202ENST00000356435 SPRR2FQ96RM1 72 aa2.22□□□□□ -2.05
PTPRD-202ENST00000356435 MT1HP80294 61 aa2.21□□□□□ -2.05
PTPRD-202ENST00000356435 HECTD4Q9Y4D8 3996 aa2.19□□□□□ -2.06
PTPRD-202ENST00000356435 DNAH6Q9C0G6 4158 aa2.19□□□□□ -2.06
PTPRD-202ENST00000356435 DNHD1Q96M86 4753 aa2.18□□□□□ -2.06
PTPRD-202ENST00000356435 RYR3Q15413 4870 aa2.18□□□□□ -2.06
PTPRD-202ENST00000356435 FAT3Q8TDW7 4589 aa2.18□□□□□ -2.06
PTPRD-202ENST00000356435 MT2AP02795 61 aa2.17□□□□□ -2.06
PTPRD-202ENST00000356435 MYCBP2O75592 4640 aa2.16□□□□□ -2.06
PTPRD-202ENST00000356435 FAT1Q14517 4588 aa2.16□□□□□ -2.06
PTPRD-202ENST00000356435 HERC1Q15751 4861 aa2.15□□□□□ -2.07
PTPRD-202ENST00000356435 LRP1Q07954 4544 aaKnown RBP2.14□□□□□ -2.07
PTPRD-202ENST00000356435 SPRR2GQ9BYE4 73 aa2.14□□□□□ -2.07
PTPRD-202ENST00000356435 CMYA5Q8N3K9 4069 aa2.13□□□□□ -2.07
PTPRD-202ENST00000356435 KRTAP19-5Q3LI72 72 aa2.13□□□□□ -2.07
PTPRD-202ENST00000356435 HSPG2P98160 4391 aa2.13□□□□□ -2.07
PTPRD-202ENST00000356435 LYSTQ99698 3801 aa2.12□□□□□ -2.07
PTPRD-202ENST00000356435 SPRR2EP22531 72 aa2.12□□□□□ -2.07
PTPRD-202ENST00000356435 SPRR2BP35325 72 aa2.12□□□□□ -2.07
PTPRD-202ENST00000356435 SPRR2AP35326 72 aa2.12□□□□□ -2.07
PTPRD-202ENST00000356435 CSMD3Q7Z407 3707 aa2.12□□□□□ -2.07
PTPRD-202ENST00000356435 KRTAP4-1Q9BYQ7 146 aa2.11□□□□□ -2.07
PTPRD-202ENST00000356435 LCE3CQ5T5A8 94 aa2.11□□□□□ -2.07
PTPRD-202ENST00000356435 DNAH7Q8WXX0 4024 aa2.1□□□□□ -2.07
PTPRD-202ENST00000356435 MT1FP04733 61 aa2.1□□□□□ -2.07
PTPRD-202ENST00000356435 HYDINQ4G0P3 5121 aa2.09□□□□□ -2.08
PTPRD-202ENST00000356435 SPRR2DP22532 72 aa2.08□□□□□ -2.08
PTPRD-202ENST00000356435 PKHD1L1Q86WI1 4243 aa2.07□□□□□ -2.08
PTPRD-202ENST00000356435 PRKDCP78527 4128 aaKnown RBP2.06□□□□□ -2.08
PTPRD-202ENST00000356435 MT3P25713 68 aa2.05□□□□□ -2.08
PTPRD-202ENST00000356435 KRTAP19-2Q3LHN2 52 aa2.05□□□□□ -2.08
PTPRD-202ENST00000356435 ABCA13Q86UQ4 5058 aa2.05□□□□□ -2.08
PTPRD-202ENST00000356435 FAT2Q9NYQ8 4349 aa2.04□□□□□ -2.08
PTPRD-202ENST00000356435 PKHD1P08F94 4074 aa2.04□□□□□ -2.08
PTPRD-202ENST00000356435 VPS13BQ7Z7G8 4022 aa2.04□□□□□ -2.08
PTPRD-202ENST00000356435 MUC17Q685J3 4493 aa2.04□□□□□ -2.08
PTPRD-202ENST00000356435 KMT2CQ8NEZ4 4911 aaKnown RBP2.03□□□□□ -2.09
PTPRD-202ENST00000356435 PKD1P98161 4303 aa2.03□□□□□ -2.09
PTPRD-202ENST00000356435 LCE2BO14633 110 aa2.02□□□□□ -2.09
PTPRD-202ENST00000356435 KRTAP17-1Q9BYP8 105 aa2.02□□□□□ -2.09
PTPRD-202ENST00000356435 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
PTPRD-202ENST00000356435 KRTAP19-8Q3LI54 63 aa2.02□□□□□ -2.09
PTPRD-202ENST00000356435 KRTAP19-1Q8IUB9 90 aa2.01□□□□□ -2.09
PTPRD-202ENST00000356435 LCE3BQ5TA77 95 aa2□□□□□ -2.09
PTPRD-202ENST00000356435 BIRC6Q9NR09 4857 aa2□□□□□ -2.09
PTPRD-202ENST00000356435 RNF213Q63HN8 5207 aa1.99□□□□□ -2.09
PTPRD-202ENST00000356435 KMT2AQ03164 3969 aa1.97□□□□□ -2.09
PTPRD-202ENST00000356435 FRAS1Q86XX4 4008 aa1.96□□□□□ -2.1
PTPRD-202ENST00000356435 PCLOQ9Y6V0 5065 aa1.96□□□□□ -2.1
PTPRD-202ENST00000356435 LRP2P98164 4655 aa1.96□□□□□ -2.1
PTPRD-202ENST00000356435 HERC2O95714 4834 aa1.95□□□□□ -2.1
PTPRD-202ENST00000356435 MT1GP13640 62 aa1.94□□□□□ -2.1
PTPRD-202ENST00000356435 TNXBP22105 4242 aa1.94□□□□□ -2.1
PTPRD-202ENST00000356435 HMCN2Q8NDA2 5059 aa1.92□□□□□ -2.1
PTPRD-202ENST00000356435 MT1XP80297 61 aa1.91□□□□□ -2.1
PTPRD-202ENST00000356435 UBR4Q5T4S7 5183 aa1.91□□□□□ -2.1
PTPRD-202ENST00000356435 LCE2CQ5TA81 110 aa1.9□□□□□ -2.1
PTPRD-202ENST00000356435 EPPK1P58107 5090 aaKnown RBP1.9□□□□□ -2.11
PTPRD-202ENST00000356435 MT1BP07438 61 aa1.88□□□□□ -2.11
PTPRD-202ENST00000356435 LCE3DQ9BYE3 92 aa1.88□□□□□ -2.11
PTPRD-202ENST00000356435 LCE2DQ5TA82 110 aaPredicted RBP1.87□□□□□ -2.11
PTPRD-202ENST00000356435 FLGP20930 4061 aaPredicted RBP1.87□□□□□ -2.11
PTPRD-202ENST00000356435 LCE3EQ5T5B0 92 aa1.85□□□□□ -2.11
PTPRD-202ENST00000356435 KRTAP2-3P0C7H8 128 aa1.85□□□□□ -2.11
PTPRD-202ENST00000356435 KRTAP2-4Q9BYR9 128 aa1.85□□□□□ -2.11
PTPRD-202ENST00000356435 KRTAP2-1Q9BYU5 128 aa1.85□□□□□ -2.11
PTPRD-202ENST00000356435 KRTAP19-3Q7Z4W3 81 aa1.83□□□□□ -2.12
PTPRD-202ENST00000356435 KRTAP9-8Q9BYQ0 159 aa1.83□□□□□ -2.12
PTPRD-202ENST00000356435 KRTAP9-3Q9BYQ3 159 aa1.82□□□□□ -2.12
PTPRD-202ENST00000356435 FAT4Q6V0I7 4981 aa1.8□□□□□ -2.12
PTPRD-202ENST00000356435 KRTAP4-8A0A0G2JLE6 195 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms