RNA–Protein interactions for RNA: ENST00000353414.8

COL11A1-201, Transcript of collagen type XI alpha 1 chain, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene COL11A1, Length 7,173 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1-201ENST00000353414 LCE3AQ5TA76 89 aa4.4□□□□□ -1.7
COL11A1-201ENST00000353414 MT1HL1P0DM35 61 aa4.4□□□□□ -1.71
COL11A1-201ENST00000353414 DNAH9Q9NYC9 4486 aa4.38□□□□□ -1.71
COL11A1-201ENST00000353414 KRTAP12-3P60328 96 aa4.36□□□□□ -1.71
COL11A1-201ENST00000353414 DNAH1Q9P2D7 4330 aa4.35□□□□□ -1.71
COL11A1-201ENST00000353414 KRTAP8-1Q8IUC2 63 aa4.34□□□□□ -1.71
COL11A1-201ENST00000353414 KMT2AQ03164 3969 aa4.33□□□□□ -1.72
COL11A1-201ENST00000353414 ANK2Q01484 3957 aa4.31□□□□□ -1.72
COL11A1-201ENST00000353414 FRAS1Q86XX4 4008 aa4.31□□□□□ -1.72
COL11A1-201ENST00000353414 DNAH3Q8TD57 4116 aa4.28□□□□□ -1.72
COL11A1-201ENST00000353414 KRTAP3-3Q9BYR6 98 aa4.28□□□□□ -1.72
COL11A1-201ENST00000353414 LYSTQ99698 3801 aa4.27□□□□□ -1.73
COL11A1-201ENST00000353414 KRTAP3-2Q9BYR7 98 aa4.23□□□□□ -1.73
COL11A1-201ENST00000353414 DNAH7Q8WXX0 4024 aa4.22□□□□□ -1.73
COL11A1-201ENST00000353414 DNAH10Q8IVF4 4471 aa4.21□□□□□ -1.74
COL11A1-201ENST00000353414 PRKDCP78527 4128 aaKnown RBP4.2□□□□□ -1.74
COL11A1-201ENST00000353414 FAT2Q9NYQ8 4349 aa4.16□□□□□ -1.74
COL11A1-201ENST00000353414 DNAH2Q9P225 4427 aa4.13□□□□□ -1.75
COL11A1-201ENST00000353414 VPS13BQ7Z7G8 4022 aa4.13□□□□□ -1.75
COL11A1-201ENST00000353414 KRTAP10-4P60372 401 aaPredicted RBP4.11□□□□□ -1.75
COL11A1-201ENST00000353414 SPRR2FQ96RM1 72 aa4.1□□□□□ -1.75
COL11A1-201ENST00000353414 KRTAP17-1Q9BYP8 105 aa4.1□□□□□ -1.75
COL11A1-201ENST00000353414 DNAH6Q9C0G6 4158 aa4.07□□□□□ -1.76
COL11A1-201ENST00000353414 KRTAP10-7P60409 375 aaPredicted RBP4.06□□□□□ -1.76
COL11A1-201ENST00000353414 MT1HP80294 61 aa4.01□□□□□ -1.77
COL11A1-201ENST00000353414 STARD9Q9P2P6 4700 aa4□□□□□ -1.77
COL11A1-201ENST00000353414 KRTAP4-1Q9BYQ7 146 aa4□□□□□ -1.77
COL11A1-201ENST00000353414 PLECQ15149 4684 aaKnown RBP3.98□□□□□ -1.77
COL11A1-201ENST00000353414 VPS13DQ5THJ4 4388 aa3.95□□□□□ -1.78
COL11A1-201ENST00000353414 HECTD4Q9Y4D8 3996 aa3.95□□□□□ -1.78
COL11A1-201ENST00000353414 DYNC2H1Q8NCM8 4307 aaKnown RBP3.95□□□□□ -1.78
COL11A1-201ENST00000353414 KRTAP19-5Q3LI72 72 aa3.93□□□□□ -1.78
COL11A1-201ENST00000353414 DNAH17Q9UFH2 4485 aa3.91□□□□□ -1.78
COL11A1-201ENST00000353414 DNAH11Q96DT5 4516 aa3.91□□□□□ -1.78
COL11A1-201ENST00000353414 SPRR2EP22531 72 aa3.91□□□□□ -1.78
COL11A1-201ENST00000353414 SPRR2BP35325 72 aa3.91□□□□□ -1.78
COL11A1-201ENST00000353414 SPRR2AP35326 72 aa3.91□□□□□ -1.78
COL11A1-201ENST00000353414 DNAH8Q96JB1 4490 aa3.9□□□□□ -1.79
COL11A1-201ENST00000353414 LRP1BQ9NZR2 4599 aa3.86□□□□□ -1.79
COL11A1-201ENST00000353414 MT2AP02795 61 aa3.85□□□□□ -1.79
COL11A1-201ENST00000353414 LCE3BQ5TA77 95 aa3.84□□□□□ -1.79
COL11A1-201ENST00000353414 DNAH5Q8TE73 4624 aa3.84□□□□□ -1.79
COL11A1-201ENST00000353414 MT1FP04733 61 aa3.82□□□□□ -1.8
COL11A1-201ENST00000353414 HSPG2P98160 4391 aa3.78□□□□□ -1.8
COL11A1-201ENST00000353414 PKHD1L1Q86WI1 4243 aa3.78□□□□□ -1.8
COL11A1-201ENST00000353414 SPRR2DP22532 72 aa3.77□□□□□ -1.81
COL11A1-201ENST00000353414 LCE3CQ5T5A8 94 aa3.76□□□□□ -1.81
COL11A1-201ENST00000353414 FAT1Q14517 4588 aa3.73□□□□□ -1.81
COL11A1-201ENST00000353414 PKHD1P08F94 4074 aa3.73□□□□□ -1.81
COL11A1-201ENST00000353414 DNHD1Q96M86 4753 aa3.72□□□□□ -1.81
COL11A1-201ENST00000353414 SPRR2GQ9BYE4 73 aa3.71□□□□□ -1.82
COL11A1-201ENST00000353414 MT1GP13640 62 aa3.7□□□□□ -1.82
COL11A1-201ENST00000353414 KRTAP9-2Q9BYQ4 174 aa3.69□□□□□ -1.82
COL11A1-201ENST00000353414 FAT3Q8TDW7 4589 aa3.68□□□□□ -1.82
COL11A1-201ENST00000353414 SACSQ9NZJ4 4579 aa3.68□□□□□ -1.82
COL11A1-201ENST00000353414 LPAP08519 4548 aa3.67□□□□□ -1.82
COL11A1-201ENST00000353414 LCE2BO14633 110 aa3.65□□□□□ -1.82
COL11A1-201ENST00000353414 DYNC1H1Q14204 4646 aaKnown RBP3.63□□□□□ -1.83
COL11A1-201ENST00000353414 KRTAP19-1Q8IUB9 90 aa3.62□□□□□ -1.83
COL11A1-201ENST00000353414 TNXBP22105 4242 aa3.6□□□□□ -1.83
COL11A1-201ENST00000353414 KRTAP19-4Q3LI73 84 aa3.59□□□□□ -1.84
COL11A1-201ENST00000353414 KRTAP9-6A0A140TA67 174 aa3.58□□□□□ -1.84
COL11A1-201ENST00000353414 KRTAP4-8A0A0G2JLE6 195 aa3.57□□□□□ -1.84
COL11A1-201ENST00000353414 KRTAP4-8Q9BYQ9 185 aa3.57□□□□□ -1.84
COL11A1-201ENST00000353414 PKD1P98161 4303 aa3.55□□□□□ -1.84
COL11A1-201ENST00000353414 APOBP04114 4563 aaKnown RBP3.55□□□□□ -1.84
COL11A1-201ENST00000353414 LRP1Q07954 4544 aaKnown RBP3.54□□□□□ -1.84
COL11A1-201ENST00000353414 SPRR5A0A1B0GTR4 108 aa3.54□□□□□ -1.84
COL11A1-201ENST00000353414 KRTAP12-4P60329 112 aa3.54□□□□□ -1.84
COL11A1-201ENST00000353414 MYCBP2O75592 4640 aa3.53□□□□□ -1.84
COL11A1-201ENST00000353414 MT4P47944 62 aa3.5□□□□□ -1.85
COL11A1-201ENST00000353414 MT3P25713 68 aa3.49□□□□□ -1.85
COL11A1-201ENST00000353414 LCE2CQ5TA81 110 aa3.48□□□□□ -1.85
COL11A1-201ENST00000353414 LCE2DQ5TA82 110 aaPredicted RBP3.45□□□□□ -1.86
COL11A1-201ENST00000353414 RYR1P21817 5038 aa3.43□□□□□ -1.86
COL11A1-201ENST00000353414 MT1XP80297 61 aa3.42□□□□□ -1.86
COL11A1-201ENST00000353414 HERC1Q15751 4861 aa3.42□□□□□ -1.86
COL11A1-201ENST00000353414 RYR2Q92736 4967 aa3.41□□□□□ -1.86
COL11A1-201ENST00000353414 KRTAP4-7Q9BYR0 210 aa3.4□□□□□ -1.87
COL11A1-201ENST00000353414 LCE3DQ9BYE3 92 aa3.38□□□□□ -1.87
COL11A1-201ENST00000353414 FLGP20930 4061 aaPredicted RBP3.38□□□□□ -1.87
COL11A1-201ENST00000353414 HYDINQ4G0P3 5121 aa3.38□□□□□ -1.87
COL11A1-201ENST00000353414 KRTAP19-8Q3LI54 63 aa3.36□□□□□ -1.87
COL11A1-201ENST00000353414 RYR3Q15413 4870 aa3.35□□□□□ -1.87
COL11A1-201ENST00000353414 KRTAP20-1Q3LI63 56 aa3.34□□□□□ -1.87
COL11A1-201ENST00000353414 LCE1BQ5T7P3 118 aa3.34□□□□□ -1.87
COL11A1-201ENST00000353414 KRTAP9-8Q9BYQ0 159 aa3.33□□□□□ -1.88
COL11A1-201ENST00000353414 LCE3EQ5T5B0 92 aa3.32□□□□□ -1.88
COL11A1-201ENST00000353414 KRTAP9-7A8MTY7 169 aa3.32□□□□□ -1.88
COL11A1-201ENST00000353414 MT1BP07438 61 aa3.31□□□□□ -1.88
COL11A1-201ENST00000353414 MUC17Q685J3 4493 aa3.29□□□□□ -1.88
COL11A1-201ENST00000353414 LOC100996750A0A140TA64 210 aa3.28□□□□□ -1.88
COL11A1-201ENST00000353414 LCE1DQ5T752 114 aa3.28□□□□□ -1.88
COL11A1-201ENST00000353414 LRP2P98164 4655 aa3.26□□□□□ -1.89
COL11A1-201ENST00000353414 KRTAP9-3Q9BYQ3 159 aa3.26□□□□□ -1.89
COL11A1-201ENST00000353414 KIAA1109Q2LD37 5005 aa3.25□□□□□ -1.89
COL11A1-201ENST00000353414 PRM1P04553 51 aa3.23□□□□□ -1.89
COL11A1-201ENST00000353414 KRTAP4-3Q9BYR4 195 aa3.22□□□□□ -1.89
COL11A1-201ENST00000353414 KRTAP19-3Q7Z4W3 81 aa3.2□□□□□ -1.9
COL11A1-201ENST00000353414 KRTAP19-6Q3LI70 58 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms