RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 BSNQ9UPA5 3926 aa5.32□□□□□ -1.56
SDC3-201ENST00000336798 KRTAP10-4P60372 401 aaPredicted RBP5.27□□□□□ -1.57
SDC3-201ENST00000336798 CSMD3Q7Z407 3707 aa5.17□□□□□ -1.58
SDC3-201ENST00000336798 AKAP9Q99996 3911 aa5.14□□□□□ -1.59
SDC3-201ENST00000336798 VPS13CQ709C8 3753 aa5.11□□□□□ -1.59
SDC3-201ENST00000336798 KRTAP4-1Q9BYQ7 146 aa5.02□□□□□ -1.61
SDC3-201ENST00000336798 SPRR2FQ96RM1 72 aa5.01□□□□□ -1.61
SDC3-201ENST00000336798 MT1HP80294 61 aa5.01□□□□□ -1.61
SDC3-201ENST00000336798 KRTAP10-7P60409 375 aaPredicted RBP4.94□□□□□ -1.62
SDC3-201ENST00000336798 DNAH9Q9NYC9 4486 aa4.93□□□□□ -1.62
SDC3-201ENST00000336798 KRTAP19-5Q3LI72 72 aa4.91□□□□□ -1.62
SDC3-201ENST00000336798 MT2AP02795 61 aa4.9□□□□□ -1.62
SDC3-201ENST00000336798 ZNF469Q96JG9 3925 aaPredicted RBP4.88□□□□□ -1.63
SDC3-201ENST00000336798 DNAH1Q9P2D7 4330 aa4.86□□□□□ -1.63
SDC3-201ENST00000336798 DNAH3Q8TD57 4116 aa4.84□□□□□ -1.63
SDC3-201ENST00000336798 DNAH5Q8TE73 4624 aa4.84□□□□□ -1.63
SDC3-201ENST00000336798 DNAH2Q9P225 4427 aa4.82□□□□□ -1.64
SDC3-201ENST00000336798 MT1FP04733 61 aa4.82□□□□□ -1.64
SDC3-201ENST00000336798 DNAH10Q8IVF4 4471 aa4.77□□□□□ -1.65
SDC3-201ENST00000336798 LCE3CQ5T5A8 94 aa4.77□□□□□ -1.65
SDC3-201ENST00000336798 SPRR2GQ9BYE4 73 aa4.75□□□□□ -1.65
SDC3-201ENST00000336798 SPRR2EP22531 72 aa4.73□□□□□ -1.65
SDC3-201ENST00000336798 SPRR2BP35325 72 aa4.73□□□□□ -1.65
SDC3-201ENST00000336798 SPRR2AP35326 72 aa4.73□□□□□ -1.65
SDC3-201ENST00000336798 DNAH11Q96DT5 4516 aa4.69□□□□□ -1.66
SDC3-201ENST00000336798 PLECQ15149 4684 aaKnown RBP4.69□□□□□ -1.66
SDC3-201ENST00000336798 LCE3BQ5TA77 95 aa4.69□□□□□ -1.66
SDC3-201ENST00000336798 DNAH17Q9UFH2 4485 aa4.67□□□□□ -1.66
SDC3-201ENST00000336798 FAT1Q14517 4588 aa4.65□□□□□ -1.67
SDC3-201ENST00000336798 VPS13DQ5THJ4 4388 aa4.64□□□□□ -1.67
SDC3-201ENST00000336798 DNAH8Q96JB1 4490 aa4.63□□□□□ -1.67
SDC3-201ENST00000336798 FAT2Q9NYQ8 4349 aa4.63□□□□□ -1.67
SDC3-201ENST00000336798 DYNC2H1Q8NCM8 4307 aaKnown RBP4.58□□□□□ -1.68
SDC3-201ENST00000336798 DNHD1Q96M86 4753 aa4.57□□□□□ -1.68
SDC3-201ENST00000336798 DNAH7Q8WXX0 4024 aa4.57□□□□□ -1.68
SDC3-201ENST00000336798 MT1GP13640 62 aa4.57□□□□□ -1.68
SDC3-201ENST00000336798 DNAH6Q9C0G6 4158 aa4.56□□□□□ -1.68
SDC3-201ENST00000336798 SPRR2DP22532 72 aa4.56□□□□□ -1.68
SDC3-201ENST00000336798 ANK2Q01484 3957 aa4.55□□□□□ -1.68
SDC3-201ENST00000336798 CMYA5Q8N3K9 4069 aa4.54□□□□□ -1.68
SDC3-201ENST00000336798 LRP1BQ9NZR2 4599 aa4.54□□□□□ -1.68
SDC3-201ENST00000336798 PRKDCP78527 4128 aaKnown RBP4.52□□□□□ -1.69
SDC3-201ENST00000336798 VPS13BQ7Z7G8 4022 aa4.5□□□□□ -1.69
SDC3-201ENST00000336798 KRTAP19-4Q3LI73 84 aa4.5□□□□□ -1.69
SDC3-201ENST00000336798 DYNC1H1Q14204 4646 aaKnown RBP4.48□□□□□ -1.69
SDC3-201ENST00000336798 LCE2BO14633 110 aa4.47□□□□□ -1.69
SDC3-201ENST00000336798 SACSQ9NZJ4 4579 aa4.47□□□□□ -1.69
SDC3-201ENST00000336798 FRAS1Q86XX4 4008 aa4.47□□□□□ -1.69
SDC3-201ENST00000336798 STARD9Q9P2P6 4700 aa4.46□□□□□ -1.7
SDC3-201ENST00000336798 KRTAP12-4P60329 112 aa4.44□□□□□ -1.7
SDC3-201ENST00000336798 RYR1P21817 5038 aa4.43□□□□□ -1.7
SDC3-201ENST00000336798 KMT2AQ03164 3969 aa4.42□□□□□ -1.7
SDC3-201ENST00000336798 KRTAP4-8A0A0G2JLE6 195 aa4.41□□□□□ -1.7
SDC3-201ENST00000336798 KRTAP4-8Q9BYQ9 185 aa4.41□□□□□ -1.7
SDC3-201ENST00000336798 SPRR5A0A1B0GTR4 108 aa4.39□□□□□ -1.71
SDC3-201ENST00000336798 MT1XP80297 61 aa4.37□□□□□ -1.71
SDC3-201ENST00000336798 APOBP04114 4563 aaKnown RBP4.37□□□□□ -1.71
SDC3-201ENST00000336798 KRTAP19-1Q8IUB9 90 aa4.36□□□□□ -1.71
SDC3-201ENST00000336798 LYSTQ99698 3801 aa4.32□□□□□ -1.72
SDC3-201ENST00000336798 KRTAP19-8Q3LI54 63 aa4.32□□□□□ -1.72
SDC3-201ENST00000336798 KRTAP17-1Q9BYP8 105 aa4.3□□□□□ -1.72
SDC3-201ENST00000336798 LCE3DQ9BYE3 92 aa4.27□□□□□ -1.73
SDC3-201ENST00000336798 MT1BP07438 61 aa4.26□□□□□ -1.73
SDC3-201ENST00000336798 FAT3Q8TDW7 4589 aa4.23□□□□□ -1.73
SDC3-201ENST00000336798 HECTD4Q9Y4D8 3996 aa4.22□□□□□ -1.73
SDC3-201ENST00000336798 HERC1Q15751 4861 aa4.22□□□□□ -1.73
SDC3-201ENST00000336798 LCE2CQ5TA81 110 aa4.22□□□□□ -1.73
SDC3-201ENST00000336798 KRTAP9-8Q9BYQ0 159 aa4.2□□□□□ -1.74
SDC3-201ENST00000336798 KRTAP4-7Q9BYR0 210 aa4.2□□□□□ -1.74
SDC3-201ENST00000336798 RYR3Q15413 4870 aa4.19□□□□□ -1.74
SDC3-201ENST00000336798 LCE2DQ5TA82 110 aaPredicted RBP4.18□□□□□ -1.74
SDC3-201ENST00000336798 LCE3EQ5T5B0 92 aa4.17□□□□□ -1.74
SDC3-201ENST00000336798 LRP1Q07954 4544 aaKnown RBP4.16□□□□□ -1.74
SDC3-201ENST00000336798 MT4P47944 62 aa4.16□□□□□ -1.74
SDC3-201ENST00000336798 MYCBP2O75592 4640 aa4.14□□□□□ -1.75
SDC3-201ENST00000336798 KIAA1109Q2LD37 5005 aa4.13□□□□□ -1.75
SDC3-201ENST00000336798 KRTAP9-2Q9BYQ4 174 aa4.13□□□□□ -1.75
SDC3-201ENST00000336798 KRTAP9-3Q9BYQ3 159 aa4.12□□□□□ -1.75
SDC3-201ENST00000336798 BIRC6Q9NR09 4857 aa4.1□□□□□ -1.75
SDC3-201ENST00000336798 KRTAP9-6A0A140TA67 174 aa4.09□□□□□ -1.76
SDC3-201ENST00000336798 KRTAP19-3Q7Z4W3 81 aa4.07□□□□□ -1.76
SDC3-201ENST00000336798 PKHD1L1Q86WI1 4243 aa4.06□□□□□ -1.76
SDC3-201ENST00000336798 LPAP08519 4548 aa4.05□□□□□ -1.76
SDC3-201ENST00000336798 LCE1BQ5T7P3 118 aa4.02□□□□□ -1.77
SDC3-201ENST00000336798 HSPG2P98160 4391 aa4.02□□□□□ -1.77
SDC3-201ENST00000336798 PRM1P04553 51 aa4.02□□□□□ -1.77
SDC3-201ENST00000336798 HERC2O95714 4834 aa4.01□□□□□ -1.77
SDC3-201ENST00000336798 LOC100996750A0A140TA64 210 aa4□□□□□ -1.77
SDC3-201ENST00000336798 PKD1P98161 4303 aa4□□□□□ -1.77
SDC3-201ENST00000336798 MT1LQ93083 61 aa3.99□□□□□ -1.77
SDC3-201ENST00000336798 RYR2Q92736 4967 aa3.97□□□□□ -1.77
SDC3-201ENST00000336798 LCE1DQ5T752 114 aa3.97□□□□□ -1.77
SDC3-201ENST00000336798 MT1EP04732 61 aa3.94□□□□□ -1.78
SDC3-201ENST00000336798 HYDINQ4G0P3 5121 aa3.94□□□□□ -1.78
SDC3-201ENST00000336798 KRTAP4-3Q9BYR4 195 aa3.94□□□□□ -1.78
SDC3-201ENST00000336798 TNXBP22105 4242 aa3.92□□□□□ -1.78
SDC3-201ENST00000336798 PCLOQ9Y6V0 5065 aa3.91□□□□□ -1.78
SDC3-201ENST00000336798 KRTAP20-1Q3LI63 56 aa3.89□□□□□ -1.79
SDC3-201ENST00000336798 MT3P25713 68 aa3.89□□□□□ -1.79
SDC3-201ENST00000336798 MUC17Q685J3 4493 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms