RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 DNAH11Q96DT5 4516 aa6.74□□□□□ -1.33
C9orf47-201ENST00000334490 DNAH1Q9P2D7 4330 aa6.72□□□□□ -1.33
C9orf47-201ENST00000334490 KRTAP15-1Q3LI76 137 aa6.65□□□□□ -1.34
C9orf47-201ENST00000334490 DYNC1H1Q14204 4646 aaKnown RBP6.64□□□□□ -1.35
C9orf47-201ENST00000334490 RYR1P21817 5038 aa6.62□□□□□ -1.35
C9orf47-201ENST00000334490 DNAH10Q8IVF4 4471 aa6.62□□□□□ -1.35
C9orf47-201ENST00000334490 VPS13DQ5THJ4 4388 aa6.61□□□□□ -1.35
C9orf47-201ENST00000334490 FAT1Q14517 4588 aa6.6□□□□□ -1.35
C9orf47-201ENST00000334490 KRTAP10-12P60413 245 aa6.56□□□□□ -1.36
C9orf47-201ENST00000334490 STARD9Q9P2P6 4700 aa6.56□□□□□ -1.36
C9orf47-201ENST00000334490 LRP1BQ9NZR2 4599 aa6.55□□□□□ -1.36
C9orf47-201ENST00000334490 PRKDCP78527 4128 aaKnown RBP6.52□□□□□ -1.37
C9orf47-201ENST00000334490 KRTAP4-1Q9BYQ7 146 aa6.52□□□□□ -1.37
C9orf47-201ENST00000334490 DNAH17Q9UFH2 4485 aa6.52□□□□□ -1.37
C9orf47-201ENST00000334490 LORP23490 312 aaPredicted RBP6.51□□□□□ -1.37
C9orf47-201ENST00000334490 KIAA1109Q2LD37 5005 aa6.44□□□□□ -1.38
C9orf47-201ENST00000334490 SACSQ9NZJ4 4579 aa6.4□□□□□ -1.39
C9orf47-201ENST00000334490 MT1HP80294 61 aa6.38□□□□□ -1.39
C9orf47-201ENST00000334490 DNAH2Q9P225 4427 aa6.37□□□□□ -1.39
C9orf47-201ENST00000334490 FAT2Q9NYQ8 4349 aa6.36□□□□□ -1.39
C9orf47-201ENST00000334490 ANK2Q01484 3957 aa6.35□□□□□ -1.39
C9orf47-201ENST00000334490 KRTAP12-3P60328 96 aa6.34□□□□□ -1.39
C9orf47-201ENST00000334490 CRCT1Q9UGL9 99 aa6.34□□□□□ -1.39
C9orf47-201ENST00000334490 RYR3Q15413 4870 aa6.33□□□□□ -1.4
C9orf47-201ENST00000334490 DYNC2H1Q8NCM8 4307 aaKnown RBP6.32□□□□□ -1.4
C9orf47-201ENST00000334490 DNAH8Q96JB1 4490 aa6.31□□□□□ -1.4
C9orf47-201ENST00000334490 LCE3AQ5TA76 89 aa6.28□□□□□ -1.4
C9orf47-201ENST00000334490 MT2AP02795 61 aa6.27□□□□□ -1.41
C9orf47-201ENST00000334490 KMT2AQ03164 3969 aa6.25□□□□□ -1.41
C9orf47-201ENST00000334490 KRTAP17-1Q9BYP8 105 aa6.23□□□□□ -1.41
C9orf47-201ENST00000334490 LYSTQ99698 3801 aa6.22□□□□□ -1.41
C9orf47-201ENST00000334490 KRTAP8-1Q8IUC2 63 aa6.21□□□□□ -1.41
C9orf47-201ENST00000334490 APOBP04114 4563 aaKnown RBP6.2□□□□□ -1.42
C9orf47-201ENST00000334490 VPS13BQ7Z7G8 4022 aa6.19□□□□□ -1.42
C9orf47-201ENST00000334490 DNAH3Q8TD57 4116 aa6.18□□□□□ -1.42
C9orf47-201ENST00000334490 KRTAP23-1A1A580 65 aa6.18□□□□□ -1.42
C9orf47-201ENST00000334490 MYCBP2O75592 4640 aa6.16□□□□□ -1.42
C9orf47-201ENST00000334490 MT1FP04733 61 aa6.14□□□□□ -1.43
C9orf47-201ENST00000334490 SPRR2GQ9BYE4 73 aa6.11□□□□□ -1.43
C9orf47-201ENST00000334490 RYR2Q92736 4967 aa6.07□□□□□ -1.44
C9orf47-201ENST00000334490 HERC2O95714 4834 aa6.07□□□□□ -1.44
C9orf47-201ENST00000334490 LRP1Q07954 4544 aaKnown RBP6.04□□□□□ -1.44
C9orf47-201ENST00000334490 FAT3Q8TDW7 4589 aa6□□□□□ -1.45
C9orf47-201ENST00000334490 BIRC6Q9NR09 4857 aa6□□□□□ -1.45
C9orf47-201ENST00000334490 CMYA5Q8N3K9 4069 aa5.93□□□□□ -1.46
C9orf47-201ENST00000334490 HYDINQ4G0P3 5121 aa5.91□□□□□ -1.46
C9orf47-201ENST00000334490 DNAH6Q9C0G6 4158 aa5.89□□□□□ -1.47
C9orf47-201ENST00000334490 SPRR2FQ96RM1 72 aa5.86□□□□□ -1.47
C9orf47-201ENST00000334490 PCLOQ9Y6V0 5065 aa5.85□□□□□ -1.47
C9orf47-201ENST00000334490 LRP2P98164 4655 aa5.81□□□□□ -1.48
C9orf47-201ENST00000334490 DNAH7Q8WXX0 4024 aa5.8□□□□□ -1.48
C9orf47-201ENST00000334490 KRTAP19-1Q8IUB9 90 aa5.79□□□□□ -1.48
C9orf47-201ENST00000334490 INE1O15225 51 aa5.79□□□□□ -1.48
C9orf47-201ENST00000334490 HSPG2P98160 4391 aa5.77□□□□□ -1.49
C9orf47-201ENST00000334490 HECTD4Q9Y4D8 3996 aa5.76□□□□□ -1.49
C9orf47-201ENST00000334490 KRTAP19-5Q3LI72 72 aa5.75□□□□□ -1.49
C9orf47-201ENST00000334490 KRTAP19-8Q3LI54 63 aa5.74□□□□□ -1.49
C9orf47-201ENST00000334490 KRTAP10-5P60370 271 aa5.74□□□□□ -1.49
C9orf47-201ENST00000334490 HERC1Q15751 4861 aa5.74□□□□□ -1.49
C9orf47-201ENST00000334490 FRAS1Q86XX4 4008 aa5.72□□□□□ -1.49
C9orf47-201ENST00000334490 PKHD1P08F94 4074 aa5.7□□□□□ -1.5
C9orf47-201ENST00000334490 KMT2CQ8NEZ4 4911 aaKnown RBP5.69□□□□□ -1.5
C9orf47-201ENST00000334490 KRTAP9-8Q9BYQ0 159 aa5.69□□□□□ -1.5
C9orf47-201ENST00000334490 LCE2CQ5TA81 110 aa5.67□□□□□ -1.5
C9orf47-201ENST00000334490 PKD1P98161 4303 aa5.67□□□□□ -1.5
C9orf47-201ENST00000334490 KRTAP10-7P60409 375 aaPredicted RBP5.66□□□□□ -1.5
C9orf47-201ENST00000334490 MT1BP07438 61 aa5.59□□□□□ -1.51
C9orf47-201ENST00000334490 MT1XP80297 61 aa5.56□□□□□ -1.52
C9orf47-201ENST00000334490 KRTAP9-3Q9BYQ3 159 aa5.54□□□□□ -1.52
C9orf47-201ENST00000334490 LCE3CQ5T5A8 94 aa5.54□□□□□ -1.52
C9orf47-201ENST00000334490 EPPK1P58107 5090 aaKnown RBP5.53□□□□□ -1.52
C9orf47-201ENST00000334490 PKHD1L1Q86WI1 4243 aa5.49□□□□□ -1.53
C9orf47-201ENST00000334490 SPRR2EP22531 72 aa5.49□□□□□ -1.53
C9orf47-201ENST00000334490 SPRR2BP35325 72 aa5.49□□□□□ -1.53
C9orf47-201ENST00000334490 SPRR2AP35326 72 aa5.49□□□□□ -1.53
C9orf47-201ENST00000334490 LPAP08519 4548 aa5.48□□□□□ -1.53
C9orf47-201ENST00000334490 ABCA13Q86UQ4 5058 aa5.48□□□□□ -1.53
C9orf47-201ENST00000334490 KRTAP19-4Q3LI73 84 aa5.46□□□□□ -1.54
C9orf47-201ENST00000334490 KRTAP19-2Q3LHN2 52 aa5.44□□□□□ -1.54
C9orf47-201ENST00000334490 KRTAP4-8A0A0G2JLE6 195 aa5.4□□□□□ -1.54
C9orf47-201ENST00000334490 KRTAP4-8Q9BYQ9 185 aa5.4□□□□□ -1.54
C9orf47-201ENST00000334490 UBR4Q5T4S7 5183 aa5.35□□□□□ -1.55
C9orf47-201ENST00000334490 LCE2BO14633 110 aa5.34□□□□□ -1.55
C9orf47-201ENST00000334490 SPRR2DP22532 72 aa5.3□□□□□ -1.56
C9orf47-201ENST00000334490 MUC17Q685J3 4493 aa5.27□□□□□ -1.57
C9orf47-201ENST00000334490 TNXBP22105 4242 aa5.26□□□□□ -1.57
C9orf47-201ENST00000334490 FSIP2Q5CZC0 6907 aa5.25□□□□□ -1.57
C9orf47-201ENST00000334490 MT1GP13640 62 aa5.25□□□□□ -1.57
C9orf47-201ENST00000334490 RNF213Q63HN8 5207 aa5.2□□□□□ -1.58
C9orf47-201ENST00000334490 FAT4Q6V0I7 4981 aa5.19□□□□□ -1.58
C9orf47-201ENST00000334490 FLGP20930 4061 aaPredicted RBP5.19□□□□□ -1.58
C9orf47-201ENST00000334490 KRTAP9-2Q9BYQ4 174 aa5.17□□□□□ -1.58
C9orf47-201ENST00000334490 LCE3BQ5TA77 95 aa5.13□□□□□ -1.59
C9orf47-201ENST00000334490 LCE2AQ5TA79 106 aaPredicted RBP5.12□□□□□ -1.59
C9orf47-201ENST00000334490 KRTAP12-4P60329 112 aa5.1□□□□□ -1.59
C9orf47-201ENST00000334490 KRTAP19-3Q7Z4W3 81 aa5.08□□□□□ -1.6
C9orf47-201ENST00000334490 KRTAP19-6Q3LI70 58 aa5.08□□□□□ -1.6
C9orf47-201ENST00000334490 SYNE1Q8NF91 8797 aaKnown RBP5.03□□□□□ -1.6
C9orf47-201ENST00000334490 HMCN2Q8NDA2 5059 aa5.01□□□□□ -1.61
C9orf47-201ENST00000334490 MT1EP04732 61 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms