RNA–Protein interactions for RNA: ENST00000334414.10

PTPRB-202, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PTPRB, Length 12,316 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-202ENST00000334414 DNAH6Q9C0G6 4158 aa2.03□□□□□ -2.08
PTPRB-202ENST00000334414 FBN1P35555 2871 aaKnown RBP2.03□□□□□ -2.08
PTPRB-202ENST00000334414 SMG1Q96Q15 3661 aaKnown RBP2.03□□□□□ -2.08
PTPRB-202ENST00000334414 HUWE1Q7Z6Z7 4374 aaKnown RBP2.03□□□□□ -2.08
PTPRB-202ENST00000334414 MT1HP80294 61 aa2.02□□□□□ -2.09
PTPRB-202ENST00000334414 MT3P25713 68 aa2.02□□□□□ -2.09
PTPRB-202ENST00000334414 TRRAPQ9Y4A5 3859 aa2.01□□□□□ -2.09
PTPRB-202ENST00000334414 MT2AP02795 61 aa1.99□□□□□ -2.09
PTPRB-202ENST00000334414 DNAH3Q8TD57 4116 aa1.98□□□□□ -2.09
PTPRB-202ENST00000334414 DNAH9Q9NYC9 4486 aa1.97□□□□□ -2.09
PTPRB-202ENST00000334414 VPS13CQ709C8 3753 aa1.97□□□□□ -2.09
PTPRB-202ENST00000334414 KRTAP12-4P60329 112 aa1.96□□□□□ -2.1
PTPRB-202ENST00000334414 COL7A1Q02388 2944 aa1.96□□□□□ -2.1
PTPRB-202ENST00000334414 MYCBP2O75592 4640 aa1.95□□□□□ -2.1
PTPRB-202ENST00000334414 SVEP1Q4LDE5 3571 aa1.95□□□□□ -2.1
PTPRB-202ENST00000334414 KRTAP19-8Q3LI54 63 aa1.95□□□□□ -2.1
PTPRB-202ENST00000334414 CUBNO60494 3623 aa1.95□□□□□ -2.1
PTPRB-202ENST00000334414 FBN3Q75N90 2809 aa1.94□□□□□ -2.1
PTPRB-202ENST00000334414 CSMD2Q7Z408 3487 aa1.94□□□□□ -2.1
PTPRB-202ENST00000334414 DNAH10Q8IVF4 4471 aa1.94□□□□□ -2.1
PTPRB-202ENST00000334414 CSMD1Q96PZ7 3565 aa1.93□□□□□ -2.1
PTPRB-202ENST00000334414 SPRR2FQ96RM1 72 aa1.92□□□□□ -2.1
PTPRB-202ENST00000334414 CMYA5Q8N3K9 4069 aa1.92□□□□□ -2.1
PTPRB-202ENST00000334414 DYNC2H1Q8NCM8 4307 aaKnown RBP1.92□□□□□ -2.1
PTPRB-202ENST00000334414 VPS13DQ5THJ4 4388 aa1.91□□□□□ -2.1
PTPRB-202ENST00000334414 ZNF469Q96JG9 3925 aaPredicted RBP1.91□□□□□ -2.1
PTPRB-202ENST00000334414 LCE3DQ9BYE3 92 aa1.91□□□□□ -2.1
PTPRB-202ENST00000334414 MT1FP04733 61 aa1.91□□□□□ -2.1
PTPRB-202ENST00000334414 KRTAP4-5Q9BYR2 181 aa1.91□□□□□ -2.1
PTPRB-202ENST00000334414 DNAH7Q8WXX0 4024 aa1.9□□□□□ -2.1
PTPRB-202ENST00000334414 LCE3EQ5T5B0 92 aa1.9□□□□□ -2.11
PTPRB-202ENST00000334414 DNAH2Q9P225 4427 aa1.9□□□□□ -2.11
PTPRB-202ENST00000334414 KRTAP4-1Q9BYQ7 146 aa1.89□□□□□ -2.11
PTPRB-202ENST00000334414 PLECQ15149 4684 aaKnown RBP1.89□□□□□ -2.11
PTPRB-202ENST00000334414 FRAS1Q86XX4 4008 aa1.88□□□□□ -2.11
PTPRB-202ENST00000334414 DNAH5Q8TE73 4624 aa1.88□□□□□ -2.11
PTPRB-202ENST00000334414 DNAH11Q96DT5 4516 aa1.88□□□□□ -2.11
PTPRB-202ENST00000334414 LCE3BQ5TA77 95 aa1.88□□□□□ -2.11
PTPRB-202ENST00000334414 MT1GP13640 62 aa1.87□□□□□ -2.11
PTPRB-202ENST00000334414 VPS13BQ7Z7G8 4022 aa1.86□□□□□ -2.11
PTPRB-202ENST00000334414 MT1XP80297 61 aa1.86□□□□□ -2.11
PTPRB-202ENST00000334414 DNAH17Q9UFH2 4485 aa1.86□□□□□ -2.11
PTPRB-202ENST00000334414 PRKDCP78527 4128 aaKnown RBP1.85□□□□□ -2.11
PTPRB-202ENST00000334414 FAT2Q9NYQ8 4349 aa1.83□□□□□ -2.12
PTPRB-202ENST00000334414 DNHD1Q96M86 4753 aa1.83□□□□□ -2.12
PTPRB-202ENST00000334414 KRTAP19-1Q8IUB9 90 aa1.83□□□□□ -2.12
PTPRB-202ENST00000334414 STARD9Q9P2P6 4700 aa1.82□□□□□ -2.12
PTPRB-202ENST00000334414 LCE2BO14633 110 aa1.81□□□□□ -2.12
PTPRB-202ENST00000334414 MT1LQ93083 61 aa1.81□□□□□ -2.12
PTPRB-202ENST00000334414 MT1EP04732 61 aa1.81□□□□□ -2.12
PTPRB-202ENST00000334414 DYNC1H1Q14204 4646 aaKnown RBP1.8□□□□□ -2.12
PTPRB-202ENST00000334414 SPRR2EP22531 72 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 SPRR2BP35325 72 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 SPRR2AP35326 72 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 SACSQ9NZJ4 4579 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 DNAH8Q96JB1 4490 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 PKHD1L1Q86WI1 4243 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 HECTD4Q9Y4D8 3996 aa1.8□□□□□ -2.12
PTPRB-202ENST00000334414 LRP1BQ9NZR2 4599 aa1.79□□□□□ -2.12
PTPRB-202ENST00000334414 SPRR2DP22532 72 aa1.78□□□□□ -2.12
PTPRB-202ENST00000334414 PKHD1P08F94 4074 aa1.78□□□□□ -2.12
PTPRB-202ENST00000334414 BIRC6Q9NR09 4857 aa1.78□□□□□ -2.12
PTPRB-202ENST00000334414 KMT2AQ03164 3969 aa1.77□□□□□ -2.13
PTPRB-202ENST00000334414 MT1BP07438 61 aa1.75□□□□□ -2.13
PTPRB-202ENST00000334414 KRTAP19-3Q7Z4W3 81 aa1.75□□□□□ -2.13
PTPRB-202ENST00000334414 LYSTQ99698 3801 aa1.74□□□□□ -2.13
PTPRB-202ENST00000334414 FAT3Q8TDW7 4589 aa1.74□□□□□ -2.13
PTPRB-202ENST00000334414 RYR2Q92736 4967 aa1.74□□□□□ -2.13
PTPRB-202ENST00000334414 PRM1P04553 51 aa1.73□□□□□ -2.13
PTPRB-202ENST00000334414 RYR1P21817 5038 aa1.72□□□□□ -2.13
PTPRB-202ENST00000334414 APOBP04114 4563 aaKnown RBP1.72□□□□□ -2.13
PTPRB-202ENST00000334414 MT1AP04731 61 aa1.7□□□□□ -2.14
PTPRB-202ENST00000334414 KRTAP2-3P0C7H8 128 aa1.69□□□□□ -2.14
PTPRB-202ENST00000334414 KRTAP9-8Q9BYQ0 159 aa1.69□□□□□ -2.14
PTPRB-202ENST00000334414 KRTAP2-4Q9BYR9 128 aa1.69□□□□□ -2.14
PTPRB-202ENST00000334414 KRTAP2-1Q9BYU5 128 aa1.69□□□□□ -2.14
PTPRB-202ENST00000334414 LRP2P98164 4655 aa1.69□□□□□ -2.14
PTPRB-202ENST00000334414 KRTAP9-3Q9BYQ3 159 aa1.68□□□□□ -2.14
PTPRB-202ENST00000334414 CSMD3Q7Z407 3707 aa1.68□□□□□ -2.14
PTPRB-202ENST00000334414 RYR3Q15413 4870 aa1.67□□□□□ -2.14
PTPRB-202ENST00000334414 MT1MQ8N339 61 aa1.66□□□□□ -2.14
PTPRB-202ENST00000334414 FAT1Q14517 4588 aa1.64□□□□□ -2.15
PTPRB-202ENST00000334414 LCE2CQ5TA81 110 aa1.63□□□□□ -2.15
PTPRB-202ENST00000334414 HSPG2P98160 4391 aa1.63□□□□□ -2.15
PTPRB-202ENST00000334414 PKD1P98161 4303 aa1.62□□□□□ -2.15
PTPRB-202ENST00000334414 HERC2O95714 4834 aa1.62□□□□□ -2.15
PTPRB-202ENST00000334414 GPR98Q8WXG9 6306 aa1.62□□□□□ -2.15
PTPRB-202ENST00000334414 TNXBP22105 4242 aa1.61□□□□□ -2.15
PTPRB-202ENST00000334414 FLGP20930 4061 aaPredicted RBP1.61□□□□□ -2.15
PTPRB-202ENST00000334414 LRP1Q07954 4544 aaKnown RBP1.61□□□□□ -2.15
PTPRB-202ENST00000334414 KRTAP4-8A0A0G2JLE6 195 aa1.6□□□□□ -2.15
PTPRB-202ENST00000334414 KRTAP4-8Q9BYQ9 185 aa1.6□□□□□ -2.15
PTPRB-202ENST00000334414 HERC1Q15751 4861 aa1.59□□□□□ -2.15
PTPRB-202ENST00000334414 KRTAP19-6Q3LI70 58 aa1.58□□□□□ -2.16
PTPRB-202ENST00000334414 LCE2DQ5TA82 110 aaPredicted RBP1.58□□□□□ -2.16
PTPRB-202ENST00000334414 HMCN2Q8NDA2 5059 aa1.57□□□□□ -2.16
PTPRB-202ENST00000334414 MUC17Q685J3 4493 aa1.57□□□□□ -2.16
PTPRB-202ENST00000334414 HYDINQ4G0P3 5121 aa1.56□□□□□ -2.16
PTPRB-202ENST00000334414 PCLOQ9Y6V0 5065 aa1.53□□□□□ -2.16
PTPRB-202ENST00000334414 KRTAP4-7Q9BYR0 210 aa1.52□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms