RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 DNAH5Q8TE73 4624 aa6.99□□□□□ -1.29
TCOF1-201ENST00000323668 DNAH8Q96JB1 4490 aa6.97□□□□□ -1.29
TCOF1-201ENST00000323668 ANK2Q01484 3957 aa6.96□□□□□ -1.3
TCOF1-201ENST00000323668 DNAH3Q8TD57 4116 aa6.9□□□□□ -1.3
TCOF1-201ENST00000323668 LRP1BQ9NZR2 4599 aa6.9□□□□□ -1.31
TCOF1-201ENST00000323668 DNAH2Q9P225 4427 aa6.9□□□□□ -1.31
TCOF1-201ENST00000323668 KRTAP15-1Q3LI76 137 aa6.85□□□□□ -1.31
TCOF1-201ENST00000323668 ALMS1Q8TCU4 4167 aa6.84□□□□□ -1.31
TCOF1-201ENST00000323668 PRKDCP78527 4128 aaKnown RBP6.82□□□□□ -1.32
TCOF1-201ENST00000323668 DNHD1Q96M86 4753 aa6.82□□□□□ -1.32
TCOF1-201ENST00000323668 KMT2AQ03164 3969 aa6.82□□□□□ -1.32
TCOF1-201ENST00000323668 KRTAP10-10P60014 251 aa6.8□□□□□ -1.32
TCOF1-201ENST00000323668 FAT1Q14517 4588 aa6.78□□□□□ -1.32
TCOF1-201ENST00000323668 LYSTQ99698 3801 aa6.74□□□□□ -1.33
TCOF1-201ENST00000323668 DYNC1H1Q14204 4646 aaKnown RBP6.74□□□□□ -1.33
TCOF1-201ENST00000323668 CMYA5Q8N3K9 4069 aa6.73□□□□□ -1.33
TCOF1-201ENST00000323668 DYNC2H1Q8NCM8 4307 aaKnown RBP6.69□□□□□ -1.34
TCOF1-201ENST00000323668 FRAS1Q86XX4 4008 aa6.68□□□□□ -1.34
TCOF1-201ENST00000323668 VPS13BQ7Z7G8 4022 aa6.66□□□□□ -1.34
TCOF1-201ENST00000323668 KRTAP4-5Q9BYR2 181 aa6.64□□□□□ -1.35
TCOF1-201ENST00000323668 SACSQ9NZJ4 4579 aa6.64□□□□□ -1.35
TCOF1-201ENST00000323668 DNAH7Q8WXX0 4024 aa6.62□□□□□ -1.35
TCOF1-201ENST00000323668 HECTD4Q9Y4D8 3996 aa6.62□□□□□ -1.35
TCOF1-201ENST00000323668 LORP23490 312 aaPredicted RBP6.6□□□□□ -1.35
TCOF1-201ENST00000323668 DNAH6Q9C0G6 4158 aa6.57□□□□□ -1.36
TCOF1-201ENST00000323668 PRO2289Q9P1D8 64 aa6.53□□□□□ -1.36
TCOF1-201ENST00000323668 FAT2Q9NYQ8 4349 aa6.53□□□□□ -1.36
TCOF1-201ENST00000323668 MYCBP2O75592 4640 aa6.48□□□□□ -1.37
TCOF1-201ENST00000323668 APOBP04114 4563 aaKnown RBP6.42□□□□□ -1.38
TCOF1-201ENST00000323668 RYR1P21817 5038 aa6.39□□□□□ -1.39
TCOF1-201ENST00000323668 KRTAP4-1Q9BYQ7 146 aa6.38□□□□□ -1.39
TCOF1-201ENST00000323668 KRTAP23-1A1A580 65 aa6.38□□□□□ -1.39
TCOF1-201ENST00000323668 LRP1Q07954 4544 aaKnown RBP6.35□□□□□ -1.39
TCOF1-201ENST00000323668 KIAA1109Q2LD37 5005 aa6.32□□□□□ -1.4
TCOF1-201ENST00000323668 HYDINQ4G0P3 5121 aa6.3□□□□□ -1.4
TCOF1-201ENST00000323668 KRTAP17-1Q9BYP8 105 aa6.24□□□□□ -1.41
TCOF1-201ENST00000323668 PKHD1P08F94 4074 aa6.23□□□□□ -1.41
TCOF1-201ENST00000323668 FAT3Q8TDW7 4589 aa6.22□□□□□ -1.41
TCOF1-201ENST00000323668 RYR3Q15413 4870 aa6.19□□□□□ -1.42
TCOF1-201ENST00000323668 LCE3AQ5TA76 89 aa6.19□□□□□ -1.42
TCOF1-201ENST00000323668 KRTAP10-12P60413 245 aa6.17□□□□□ -1.42
TCOF1-201ENST00000323668 PKD1P98161 4303 aa6.12□□□□□ -1.43
TCOF1-201ENST00000323668 KRTAP12-3P60328 96 aa6.11□□□□□ -1.43
TCOF1-201ENST00000323668 LRP2P98164 4655 aa6.09□□□□□ -1.43
TCOF1-201ENST00000323668 RYR2Q92736 4967 aa6.09□□□□□ -1.43
TCOF1-201ENST00000323668 INE1O15225 51 aa6.07□□□□□ -1.44
TCOF1-201ENST00000323668 SPRR2GQ9BYE4 73 aa6.05□□□□□ -1.44
TCOF1-201ENST00000323668 HSPG2P98160 4391 aa5.95□□□□□ -1.46
TCOF1-201ENST00000323668 MT1HP80294 61 aa5.95□□□□□ -1.46
TCOF1-201ENST00000323668 MT2AP02795 61 aa5.92□□□□□ -1.46
TCOF1-201ENST00000323668 PKHD1L1Q86WI1 4243 aa5.92□□□□□ -1.46
TCOF1-201ENST00000323668 KMT2CQ8NEZ4 4911 aaKnown RBP5.91□□□□□ -1.46
TCOF1-201ENST00000323668 MT1FP04733 61 aa5.86□□□□□ -1.47
TCOF1-201ENST00000323668 KRTAP19-1Q8IUB9 90 aa5.83□□□□□ -1.48
TCOF1-201ENST00000323668 TNXBP22105 4242 aa5.82□□□□□ -1.48
TCOF1-201ENST00000323668 KRTAP8-1Q8IUC2 63 aa5.81□□□□□ -1.48
TCOF1-201ENST00000323668 HERC2O95714 4834 aa5.8□□□□□ -1.48
TCOF1-201ENST00000323668 LPAP08519 4548 aa5.77□□□□□ -1.49
TCOF1-201ENST00000323668 KRTAP19-2Q3LHN2 52 aa5.71□□□□□ -1.5
TCOF1-201ENST00000323668 SPRR5A0A1B0GTR4 108 aa5.68□□□□□ -1.5
TCOF1-201ENST00000323668 KRTAP19-8Q3LI54 63 aa5.68□□□□□ -1.5
TCOF1-201ENST00000323668 LCE2CQ5TA81 110 aa5.64□□□□□ -1.51
TCOF1-201ENST00000323668 KRTAP19-5Q3LI72 72 aa5.56□□□□□ -1.52
TCOF1-201ENST00000323668 MUC17Q685J3 4493 aa5.56□□□□□ -1.52
TCOF1-201ENST00000323668 MT1XP80297 61 aa5.56□□□□□ -1.52
TCOF1-201ENST00000323668 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
TCOF1-201ENST00000323668 KRTAP10-7P60409 375 aaPredicted RBP5.54□□□□□ -1.52
TCOF1-201ENST00000323668 MT1BP07438 61 aa5.53□□□□□ -1.52
TCOF1-201ENST00000323668 KRTAP10-5P60370 271 aa5.53□□□□□ -1.52
TCOF1-201ENST00000323668 CRCT1Q9UGL9 99 aa5.53□□□□□ -1.52
TCOF1-201ENST00000323668 LCE3CQ5T5A8 94 aa5.51□□□□□ -1.53
TCOF1-201ENST00000323668 EPPK1P58107 5090 aaKnown RBP5.49□□□□□ -1.53
TCOF1-201ENST00000323668 FLGP20930 4061 aaPredicted RBP5.48□□□□□ -1.53
TCOF1-201ENST00000323668 HERC1Q15751 4861 aa5.48□□□□□ -1.53
TCOF1-201ENST00000323668 ABCA13Q86UQ4 5058 aa5.45□□□□□ -1.54
TCOF1-201ENST00000323668 BIRC6Q9NR09 4857 aa5.44□□□□□ -1.54
TCOF1-201ENST00000323668 PCLOQ9Y6V0 5065 aa5.37□□□□□ -1.55
TCOF1-201ENST00000323668 KRTAP9-3Q9BYQ3 159 aa5.36□□□□□ -1.55
TCOF1-201ENST00000323668 KRTAP19-4Q3LI73 84 aa5.32□□□□□ -1.56
TCOF1-201ENST00000323668 KRTAP4-8A0A0G2JLE6 195 aa5.22□□□□□ -1.57
TCOF1-201ENST00000323668 KRTAP4-8Q9BYQ9 185 aa5.22□□□□□ -1.57
TCOF1-201ENST00000323668 MUC2Q02817 5179 aa5.22□□□□□ -1.57
TCOF1-201ENST00000323668 HMCN2Q8NDA2 5059 aa5.15□□□□□ -1.59
TCOF1-201ENST00000323668 LCE2BO14633 110 aa5.12□□□□□ -1.59
TCOF1-201ENST00000323668 FAT4Q6V0I7 4981 aa5.11□□□□□ -1.59
TCOF1-201ENST00000323668 RNF213Q63HN8 5207 aa5.09□□□□□ -1.59
TCOF1-201ENST00000323668 UBR4Q5T4S7 5183 aa5.08□□□□□ -1.6
TCOF1-201ENST00000323668 SPRR2FQ96RM1 72 aa5.01□□□□□ -1.61
TCOF1-201ENST00000323668 KRTAP4-7Q9BYR0 210 aa4.99□□□□□ -1.61
TCOF1-201ENST00000323668 MT1LQ93083 61 aa4.94□□□□□ -1.62
TCOF1-201ENST00000323668 MT1GP13640 62 aa4.94□□□□□ -1.62
TCOF1-201ENST00000323668 MT1EP04732 61 aa4.9□□□□□ -1.62
TCOF1-201ENST00000323668 KRTAP12-4P60329 112 aa4.88□□□□□ -1.63
TCOF1-201ENST00000323668 KRTAP19-7Q3SYF9 63 aa4.82□□□□□ -1.64
TCOF1-201ENST00000323668 LCE3BQ5TA77 95 aa4.8□□□□□ -1.64
TCOF1-201ENST00000323668 KRTAP19-3Q7Z4W3 81 aa4.77□□□□□ -1.65
TCOF1-201ENST00000323668 LCE2AQ5TA79 106 aaPredicted RBP4.76□□□□□ -1.65
TCOF1-201ENST00000323668 FSIP2Q5CZC0 6907 aa4.7□□□□□ -1.66
TCOF1-201ENST00000323668 KRTAP2-3P0C7H8 128 aa4.7□□□□□ -1.66
TCOF1-201ENST00000323668 KRTAP2-4Q9BYR9 128 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms