RNA–Protein interactions for RNA: ENST00000312481.11

COL6A5-202, Transcript of collagen type VI alpha 5 chain, humanhuman

TSL 1 (best)

Gene COL6A5, Length 9,226 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5-202ENST00000312481 KRTAP3-3Q9BYR6 98 aa4.05□□□□□ -1.76
COL6A5-202ENST00000312481 LYSTQ99698 3801 aa4.01□□□□□ -1.77
COL6A5-202ENST00000312481 ANK2Q01484 3957 aa4□□□□□ -1.77
COL6A5-202ENST00000312481 KRTAP10-4P60372 401 aaPredicted RBP3.99□□□□□ -1.77
COL6A5-202ENST00000312481 ANK3Q12955 4377 aaKnown RBP3.95□□□□□ -1.78
COL6A5-202ENST00000312481 HUWE1Q7Z6Z7 4374 aaKnown RBP3.95□□□□□ -1.78
COL6A5-202ENST00000312481 CSMD2Q7Z408 3487 aa3.94□□□□□ -1.78
COL6A5-202ENST00000312481 MT1HL1P0DM35 61 aa3.93□□□□□ -1.78
COL6A5-202ENST00000312481 KRTAP10-12P60413 245 aa3.91□□□□□ -1.78
COL6A5-202ENST00000312481 VPS13BQ7Z7G8 4022 aa3.88□□□□□ -1.79
COL6A5-202ENST00000312481 CSMD3Q7Z407 3707 aa3.85□□□□□ -1.79
COL6A5-202ENST00000312481 DNAH2Q9P225 4427 aa3.85□□□□□ -1.79
COL6A5-202ENST00000312481 PRKDCP78527 4128 aaKnown RBP3.83□□□□□ -1.8
COL6A5-202ENST00000312481 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
COL6A5-202ENST00000312481 DNAH10Q8IVF4 4471 aa3.79□□□□□ -1.8
COL6A5-202ENST00000312481 FRAS1Q86XX4 4008 aa3.78□□□□□ -1.8
COL6A5-202ENST00000312481 KMT2AQ03164 3969 aa3.76□□□□□ -1.81
COL6A5-202ENST00000312481 SPRR2GQ9BYE4 73 aa3.75□□□□□ -1.81
COL6A5-202ENST00000312481 FLGP20930 4061 aaPredicted RBP3.69□□□□□ -1.82
COL6A5-202ENST00000312481 LORP23490 312 aaPredicted RBP3.69□□□□□ -1.82
COL6A5-202ENST00000312481 DYNC2H1Q8NCM8 4307 aaKnown RBP3.68□□□□□ -1.82
COL6A5-202ENST00000312481 PKHD1P08F94 4074 aa3.63□□□□□ -1.83
COL6A5-202ENST00000312481 KRTAP8-1Q8IUC2 63 aa3.62□□□□□ -1.83
COL6A5-202ENST00000312481 VPS13DQ5THJ4 4388 aa3.6□□□□□ -1.83
COL6A5-202ENST00000312481 DNAH9Q9NYC9 4486 aa3.59□□□□□ -1.83
COL6A5-202ENST00000312481 FAT2Q9NYQ8 4349 aa3.58□□□□□ -1.84
COL6A5-202ENST00000312481 LCE3AQ5TA76 89 aa3.56□□□□□ -1.84
COL6A5-202ENST00000312481 SPRR5A0A1B0GTR4 108 aa3.54□□□□□ -1.84
COL6A5-202ENST00000312481 DNAH11Q96DT5 4516 aa3.53□□□□□ -1.84
COL6A5-202ENST00000312481 KRTAP19-8Q3LI54 63 aa3.46□□□□□ -1.86
COL6A5-202ENST00000312481 DNAH17Q9UFH2 4485 aa3.46□□□□□ -1.86
COL6A5-202ENST00000312481 KRTAP10-5P60370 271 aa3.44□□□□□ -1.86
COL6A5-202ENST00000312481 LCE3CQ5T5A8 94 aa3.42□□□□□ -1.86
COL6A5-202ENST00000312481 STARD9Q9P2P6 4700 aa3.38□□□□□ -1.87
COL6A5-202ENST00000312481 DNAH8Q96JB1 4490 aa3.37□□□□□ -1.87
COL6A5-202ENST00000312481 DYNC1H1Q14204 4646 aaKnown RBP3.37□□□□□ -1.87
COL6A5-202ENST00000312481 KRTAP4-5Q9BYR2 181 aa3.35□□□□□ -1.87
COL6A5-202ENST00000312481 PLECQ15149 4684 aaKnown RBP3.35□□□□□ -1.87
COL6A5-202ENST00000312481 PKHD1L1Q86WI1 4243 aa3.35□□□□□ -1.87
COL6A5-202ENST00000312481 MT1HP80294 61 aa3.34□□□□□ -1.88
COL6A5-202ENST00000312481 MT2AP02795 61 aa3.32□□□□□ -1.88
COL6A5-202ENST00000312481 LRP1Q07954 4544 aaKnown RBP3.3□□□□□ -1.88
COL6A5-202ENST00000312481 DNAH5Q8TE73 4624 aa3.3□□□□□ -1.88
COL6A5-202ENST00000312481 PKD1P98161 4303 aa3.28□□□□□ -1.88
COL6A5-202ENST00000312481 HSPG2P98160 4391 aa3.26□□□□□ -1.89
COL6A5-202ENST00000312481 TNXBP22105 4242 aa3.25□□□□□ -1.89
COL6A5-202ENST00000312481 MT3P25713 68 aa3.24□□□□□ -1.89
COL6A5-202ENST00000312481 KRTAP10-7P60409 375 aaPredicted RBP3.24□□□□□ -1.89
COL6A5-202ENST00000312481 KRTAP19-1Q8IUB9 90 aa3.23□□□□□ -1.89
COL6A5-202ENST00000312481 KRTAP4-1Q9BYQ7 146 aa3.21□□□□□ -1.9
COL6A5-202ENST00000312481 KRTAP19-5Q3LI72 72 aa3.19□□□□□ -1.9
COL6A5-202ENST00000312481 MT1FP04733 61 aa3.17□□□□□ -1.9
COL6A5-202ENST00000312481 LRP1BQ9NZR2 4599 aa3.17□□□□□ -1.9
COL6A5-202ENST00000312481 APOBP04114 4563 aaKnown RBP3.14□□□□□ -1.91
COL6A5-202ENST00000312481 SACSQ9NZJ4 4579 aa3.14□□□□□ -1.91
COL6A5-202ENST00000312481 MT1XP80297 61 aa3.13□□□□□ -1.91
COL6A5-202ENST00000312481 MT1GP13640 62 aa3.12□□□□□ -1.91
COL6A5-202ENST00000312481 DNHD1Q96M86 4753 aa3.11□□□□□ -1.91
COL6A5-202ENST00000312481 MT1LQ93083 61 aa3.11□□□□□ -1.91
COL6A5-202ENST00000312481 SPRR2FQ96RM1 72 aa3.08□□□□□ -1.92
COL6A5-202ENST00000312481 RYR1P21817 5038 aa3.04□□□□□ -1.92
COL6A5-202ENST00000312481 KRTAP9-8Q9BYQ0 159 aa3.04□□□□□ -1.92
COL6A5-202ENST00000312481 MT1EP04732 61 aa3.02□□□□□ -1.93
COL6A5-202ENST00000312481 MT1BP07438 61 aa3.01□□□□□ -1.93
COL6A5-202ENST00000312481 FAT1Q14517 4588 aa3□□□□□ -1.93
COL6A5-202ENST00000312481 KRTAP12-4P60329 112 aa2.98□□□□□ -1.93
COL6A5-202ENST00000312481 MYCBP2O75592 4640 aa2.98□□□□□ -1.93
COL6A5-202ENST00000312481 KRTAP9-3Q9BYQ3 159 aa2.97□□□□□ -1.93
COL6A5-202ENST00000312481 LCE2CQ5TA81 110 aa2.94□□□□□ -1.94
COL6A5-202ENST00000312481 KRTAP19-2Q3LHN2 52 aa2.93□□□□□ -1.94
COL6A5-202ENST00000312481 LCE3EQ5T5B0 92 aa2.93□□□□□ -1.94
COL6A5-202ENST00000312481 FAT3Q8TDW7 4589 aa2.92□□□□□ -1.94
COL6A5-202ENST00000312481 LCE3DQ9BYE3 92 aa2.92□□□□□ -1.94
COL6A5-202ENST00000312481 SPRR2EP22531 72 aa2.91□□□□□ -1.94
COL6A5-202ENST00000312481 SPRR2BP35325 72 aa2.91□□□□□ -1.94
COL6A5-202ENST00000312481 SPRR2AP35326 72 aa2.91□□□□□ -1.94
COL6A5-202ENST00000312481 KRTAP19-3Q7Z4W3 81 aa2.91□□□□□ -1.94
COL6A5-202ENST00000312481 RYR3Q15413 4870 aa2.9□□□□□ -1.95
COL6A5-202ENST00000312481 BIRC6Q9NR09 4857 aa2.9□□□□□ -1.95
COL6A5-202ENST00000312481 RYR2Q92736 4967 aa2.89□□□□□ -1.95
COL6A5-202ENST00000312481 LCE3BQ5TA77 95 aa2.88□□□□□ -1.95
COL6A5-202ENST00000312481 LCE2BO14633 110 aa2.86□□□□□ -1.95
COL6A5-202ENST00000312481 KRTAP2-3P0C7H8 128 aa2.85□□□□□ -1.95
COL6A5-202ENST00000312481 KRTAP2-4Q9BYR9 128 aa2.85□□□□□ -1.95
COL6A5-202ENST00000312481 KRTAP2-1Q9BYU5 128 aa2.85□□□□□ -1.95
COL6A5-202ENST00000312481 MT1AP04731 61 aa2.84□□□□□ -1.96
COL6A5-202ENST00000312481 MT1MQ8N339 61 aa2.83□□□□□ -1.96
COL6A5-202ENST00000312481 KRTAP19-6Q3LI70 58 aa2.83□□□□□ -1.96
COL6A5-202ENST00000312481 SPRR2DP22532 72 aa2.83□□□□□ -1.96
COL6A5-202ENST00000312481 MT4P47944 62 aa2.8□□□□□ -1.96
COL6A5-202ENST00000312481 KRTAP17-1Q9BYP8 105 aa2.79□□□□□ -1.96
COL6A5-202ENST00000312481 MUC17Q685J3 4493 aa2.77□□□□□ -1.97
COL6A5-202ENST00000312481 PCLOQ9Y6V0 5065 aa2.75□□□□□ -1.97
COL6A5-202ENST00000312481 KIAA1109Q2LD37 5005 aa2.74□□□□□ -1.97
COL6A5-202ENST00000312481 LCE2DQ5TA82 110 aaPredicted RBP2.74□□□□□ -1.97
COL6A5-202ENST00000312481 LCE1AQ5T7P2 110 aa2.73□□□□□ -1.97
COL6A5-202ENST00000312481 HERC1Q15751 4861 aa2.73□□□□□ -1.97
COL6A5-202ENST00000312481 LRP2P98164 4655 aa2.73□□□□□ -1.97
COL6A5-202ENST00000312481 HERC2O95714 4834 aa2.71□□□□□ -1.98
COL6A5-202ENST00000312481 LCE1BQ5T7P3 118 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms