RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DNAH6Q9C0G6 4158 aa1.86□□□□□ -2.11
USH2A-201ENST00000307340 KRTAP15-1Q3LI76 137 aa1.85□□□□□ -2.11
USH2A-201ENST00000307340 KRTAP3-1Q9BYR8 98 aa1.83□□□□□ -2.12
USH2A-201ENST00000307340 KMT2AQ03164 3969 aa1.83□□□□□ -2.12
USH2A-201ENST00000307340 KRTAP10-12P60413 245 aa1.82□□□□□ -2.12
USH2A-201ENST00000307340 KRTAP3-3Q9BYR6 98 aa1.79□□□□□ -2.12
USH2A-201ENST00000307340 DNAH1Q9P2D7 4330 aa1.78□□□□□ -2.12
USH2A-201ENST00000307340 KRTAP3-2Q9BYR7 98 aa1.78□□□□□ -2.13
USH2A-201ENST00000307340 SPRR2GQ9BYE4 73 aa1.77□□□□□ -2.13
USH2A-201ENST00000307340 KRTAP10-4P60372 401 aaPredicted RBP1.77□□□□□ -2.13
USH2A-201ENST00000307340 FLGP20930 4061 aaPredicted RBP1.77□□□□□ -2.13
USH2A-201ENST00000307340 PRKDCP78527 4128 aaKnown RBP1.76□□□□□ -2.13
USH2A-201ENST00000307340 MT1HL1P0DM35 61 aa1.75□□□□□ -2.13
USH2A-201ENST00000307340 KRTAP12-3P60328 96 aa1.75□□□□□ -2.13
USH2A-201ENST00000307340 HUWE1Q7Z6Z7 4374 aaKnown RBP1.74□□□□□ -2.13
USH2A-201ENST00000307340 ANK3Q12955 4377 aaKnown RBP1.73□□□□□ -2.13
USH2A-201ENST00000307340 LORP23490 312 aaPredicted RBP1.71□□□□□ -2.13
USH2A-201ENST00000307340 PKHD1P08F94 4074 aa1.67□□□□□ -2.14
USH2A-201ENST00000307340 DYNC2H1Q8NCM8 4307 aaKnown RBP1.65□□□□□ -2.14
USH2A-201ENST00000307340 DNAH2Q9P225 4427 aa1.65□□□□□ -2.14
USH2A-201ENST00000307340 KRTAP8-1Q8IUC2 63 aa1.65□□□□□ -2.15
USH2A-201ENST00000307340 FAT2Q9NYQ8 4349 aa1.61□□□□□ -2.15
USH2A-201ENST00000307340 VPS13DQ5THJ4 4388 aa1.6□□□□□ -2.15
USH2A-201ENST00000307340 SPRR5A0A1B0GTR4 108 aa1.6□□□□□ -2.15
USH2A-201ENST00000307340 KRTAP19-8Q3LI54 63 aa1.58□□□□□ -2.16
USH2A-201ENST00000307340 LCE3CQ5T5A8 94 aa1.58□□□□□ -2.16
USH2A-201ENST00000307340 LCE3AQ5TA76 89 aa1.57□□□□□ -2.16
USH2A-201ENST00000307340 DNAH10Q8IVF4 4471 aa1.57□□□□□ -2.16
USH2A-201ENST00000307340 DNAH9Q9NYC9 4486 aa1.57□□□□□ -2.16
USH2A-201ENST00000307340 KRTAP10-7P60409 375 aaPredicted RBP1.56□□□□□ -2.16
USH2A-201ENST00000307340 PKHD1L1Q86WI1 4243 aa1.53□□□□□ -2.16
USH2A-201ENST00000307340 MT1HP80294 61 aa1.52□□□□□ -2.17
USH2A-201ENST00000307340 TNXBP22105 4242 aa1.5□□□□□ -2.17
USH2A-201ENST00000307340 PKD1P98161 4303 aa1.5□□□□□ -2.17
USH2A-201ENST00000307340 MT1GP13640 62 aa1.49□□□□□ -2.17
USH2A-201ENST00000307340 STARD9Q9P2P6 4700 aa1.49□□□□□ -2.17
USH2A-201ENST00000307340 DNAH17Q9UFH2 4485 aa1.49□□□□□ -2.17
USH2A-201ENST00000307340 DNAH11Q96DT5 4516 aa1.48□□□□□ -2.17
USH2A-201ENST00000307340 KRTAP10-5P60370 271 aa1.47□□□□□ -2.17
USH2A-201ENST00000307340 MT1FP04733 61 aa1.47□□□□□ -2.17
USH2A-201ENST00000307340 MT1LQ93083 61 aa1.47□□□□□ -2.17
USH2A-201ENST00000307340 KRTAP12-4P60329 112 aa1.46□□□□□ -2.18
USH2A-201ENST00000307340 MT2AP02795 61 aa1.45□□□□□ -2.18
USH2A-201ENST00000307340 MT1EP04732 61 aa1.44□□□□□ -2.18
USH2A-201ENST00000307340 KRTAP19-1Q8IUB9 90 aa1.43□□□□□ -2.18
USH2A-201ENST00000307340 DNAH8Q96JB1 4490 aa1.43□□□□□ -2.18
USH2A-201ENST00000307340 PLECQ15149 4684 aaKnown RBP1.42□□□□□ -2.18
USH2A-201ENST00000307340 KRTAP19-5Q3LI72 72 aa1.4□□□□□ -2.19
USH2A-201ENST00000307340 DNHD1Q96M86 4753 aa1.39□□□□□ -2.19
USH2A-201ENST00000307340 MT1XP80297 61 aa1.39□□□□□ -2.19
USH2A-201ENST00000307340 KRTAP9-8Q9BYQ0 159 aa1.38□□□□□ -2.19
USH2A-201ENST00000307340 LCE3DQ9BYE3 92 aa1.37□□□□□ -2.19
USH2A-201ENST00000307340 MT1AP04731 61 aa1.37□□□□□ -2.19
USH2A-201ENST00000307340 SPRR2AP35326 72 aa1.37□□□□□ -2.19
USH2A-201ENST00000307340 LCE2CQ5TA81 110 aa1.37□□□□□ -2.19
USH2A-201ENST00000307340 HSPG2P98160 4391 aa1.37□□□□□ -2.19
USH2A-201ENST00000307340 LCE2BO14633 110 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 LCE3EQ5T5B0 92 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 SPRR2FQ96RM1 72 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 MT1MQ8N339 61 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 SACSQ9NZJ4 4579 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 MYCBP2O75592 4640 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 KRTAP4-5Q9BYR2 181 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 LRP1BQ9NZR2 4599 aa1.36□□□□□ -2.19
USH2A-201ENST00000307340 FAT1Q14517 4588 aa1.35□□□□□ -2.19
USH2A-201ENST00000307340 KRTAP19-3Q7Z4W3 81 aa1.35□□□□□ -2.19
USH2A-201ENST00000307340 KRTAP19-6Q3LI70 58 aa1.35□□□□□ -2.19
USH2A-201ENST00000307340 LCE1AQ5T7P2 110 aa1.34□□□□□ -2.19
USH2A-201ENST00000307340 RYR2Q92736 4967 aa1.33□□□□□ -2.2
USH2A-201ENST00000307340 DNAH5Q8TE73 4624 aa1.33□□□□□ -2.2
USH2A-201ENST00000307340 KRTAP9-3Q9BYQ3 159 aa1.33□□□□□ -2.2
USH2A-201ENST00000307340 LRP1Q07954 4544 aaKnown RBP1.33□□□□□ -2.2
USH2A-201ENST00000307340 MT1BP07438 61 aa1.33□□□□□ -2.2
USH2A-201ENST00000307340 KRTAP4-1Q9BYQ7 146 aa1.33□□□□□ -2.2
USH2A-201ENST00000307340 CRCT1Q9UGL9 99 aa1.33□□□□□ -2.2
USH2A-201ENST00000307340 SPRR2BP35325 72 aa1.32□□□□□ -2.2
USH2A-201ENST00000307340 APOBP04114 4563 aaKnown RBP1.32□□□□□ -2.2
USH2A-201ENST00000307340 BIRC6Q9NR09 4857 aa1.31□□□□□ -2.2
USH2A-201ENST00000307340 LCE2DQ5TA82 110 aaPredicted RBP1.3□□□□□ -2.2
USH2A-201ENST00000307340 DYNC1H1Q14204 4646 aaKnown RBP1.28□□□□□ -2.2
USH2A-201ENST00000307340 KRTAP2-3P0C7H8 128 aa1.27□□□□□ -2.21
USH2A-201ENST00000307340 KRTAP2-4Q9BYR9 128 aa1.27□□□□□ -2.21
USH2A-201ENST00000307340 KRTAP2-1Q9BYU5 128 aa1.27□□□□□ -2.21
USH2A-201ENST00000307340 KRTAP19-2Q3LHN2 52 aa1.26□□□□□ -2.21
USH2A-201ENST00000307340 SPRR2EP22531 72 aa1.26□□□□□ -2.21
USH2A-201ENST00000307340 SPRR2DP22532 72 aa1.26□□□□□ -2.21
USH2A-201ENST00000307340 FAT3Q8TDW7 4589 aa1.25□□□□□ -2.21
USH2A-201ENST00000307340 RYR1P21817 5038 aa1.24□□□□□ -2.21
USH2A-201ENST00000307340 LCE4AQ5TA78 99 aa1.21□□□□□ -2.22
USH2A-201ENST00000307340 LCE3BQ5TA77 95 aa1.2□□□□□ -2.22
USH2A-201ENST00000307340 KRTAP17-1Q9BYP8 105 aa1.2□□□□□ -2.22
USH2A-201ENST00000307340 PCLOQ9Y6V0 5065 aa1.2□□□□□ -2.22
USH2A-201ENST00000307340 LCE2AQ5TA79 106 aaPredicted RBP1.18□□□□□ -2.22
USH2A-201ENST00000307340 LRP2P98164 4655 aa1.18□□□□□ -2.22
USH2A-201ENST00000307340 LCE5AQ5TCM9 118 aa1.17□□□□□ -2.22
USH2A-201ENST00000307340 KRTAP19-7Q3SYF9 63 aa1.15□□□□□ -2.22
USH2A-201ENST00000307340 KRTAP6-3Q3LI67 103 aa1.13□□□□□ -2.23
USH2A-201ENST00000307340 ABCA13Q86UQ4 5058 aa1.12□□□□□ -2.23
USH2A-201ENST00000307340 HERC1Q15751 4861 aa1.12□□□□□ -2.23
USH2A-201ENST00000307340 RYR3Q15413 4870 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 1202.1 ms