RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 LORP23490 312 aaPredicted RBP2.17□□□□□ -2.06
SCN1A-201ENST00000303395 DNAH2Q9P225 4427 aa2.16□□□□□ -2.06
SCN1A-201ENST00000303395 AKAP9Q99996 3911 aa2.15□□□□□ -2.07
SCN1A-201ENST00000303395 LCE3AQ5TA76 89 aa2.13□□□□□ -2.07
SCN1A-201ENST00000303395 CSMD2Q7Z408 3487 aa2.12□□□□□ -2.07
SCN1A-201ENST00000303395 CSMD1Q96PZ7 3565 aa2.12□□□□□ -2.07
SCN1A-201ENST00000303395 DNAH10Q8IVF4 4471 aa2.12□□□□□ -2.07
SCN1A-201ENST00000303395 VPS13CQ709C8 3753 aa2.11□□□□□ -2.07
SCN1A-201ENST00000303395 RYR2Q92736 4967 aa2.1□□□□□ -2.07
SCN1A-201ENST00000303395 DNAH11Q96DT5 4516 aa2.09□□□□□ -2.07
SCN1A-201ENST00000303395 DNAH1Q9P2D7 4330 aa2.09□□□□□ -2.07
SCN1A-201ENST00000303395 KRTAP19-8Q3LI54 63 aa2.08□□□□□ -2.08
SCN1A-201ENST00000303395 SVEP1Q4LDE5 3571 aa2.07□□□□□ -2.08
SCN1A-201ENST00000303395 TRRAPQ9Y4A5 3859 aa2.07□□□□□ -2.08
SCN1A-201ENST00000303395 ANK3Q12955 4377 aaKnown RBP2.06□□□□□ -2.08
SCN1A-201ENST00000303395 DYNC1H1Q14204 4646 aaKnown RBP2.06□□□□□ -2.08
SCN1A-201ENST00000303395 CSMD3Q7Z407 3707 aa2.06□□□□□ -2.08
SCN1A-201ENST00000303395 FAT2Q9NYQ8 4349 aa2.06□□□□□ -2.08
SCN1A-201ENST00000303395 MT3P25713 68 aa2.05□□□□□ -2.08
SCN1A-201ENST00000303395 DNAH3Q8TD57 4116 aa2.05□□□□□ -2.08
SCN1A-201ENST00000303395 PCLOQ9Y6V0 5065 aa2.05□□□□□ -2.08
SCN1A-201ENST00000303395 LYSTQ99698 3801 aa2.05□□□□□ -2.08
SCN1A-201ENST00000303395 SPRR2FQ96RM1 72 aa2.04□□□□□ -2.08
SCN1A-201ENST00000303395 ZNF469Q96JG9 3925 aaPredicted RBP2.03□□□□□ -2.08
SCN1A-201ENST00000303395 DNAH6Q9C0G6 4158 aa2.03□□□□□ -2.08
SCN1A-201ENST00000303395 DYNC2H1Q8NCM8 4307 aaKnown RBP2.02□□□□□ -2.09
SCN1A-201ENST00000303395 CMYA5Q8N3K9 4069 aa2.02□□□□□ -2.09
SCN1A-201ENST00000303395 LCE3CQ5T5A8 94 aa2.02□□□□□ -2.09
SCN1A-201ENST00000303395 LRP1BQ9NZR2 4599 aa2.01□□□□□ -2.09
SCN1A-201ENST00000303395 HSPG2P98160 4391 aa2□□□□□ -2.09
SCN1A-201ENST00000303395 CUBNO60494 3623 aa2□□□□□ -2.09
SCN1A-201ENST00000303395 LRP1Q07954 4544 aaKnown RBP1.99□□□□□ -2.09
SCN1A-201ENST00000303395 KRTAP12-4P60329 112 aa1.99□□□□□ -2.09
SCN1A-201ENST00000303395 DNHD1Q96M86 4753 aa1.98□□□□□ -2.09
SCN1A-201ENST00000303395 HERC1Q15751 4861 aa1.96□□□□□ -2.1
SCN1A-201ENST00000303395 UBR4Q5T4S7 5183 aa1.95□□□□□ -2.1
SCN1A-201ENST00000303395 SPRR2EP22531 72 aa1.95□□□□□ -2.1
SCN1A-201ENST00000303395 SPRR2BP35325 72 aa1.95□□□□□ -2.1
SCN1A-201ENST00000303395 SPRR2AP35326 72 aa1.95□□□□□ -2.1
SCN1A-201ENST00000303395 DNAH7Q8WXX0 4024 aa1.94□□□□□ -2.1
SCN1A-201ENST00000303395 DNAH17Q9UFH2 4485 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 VPS13DQ5THJ4 4388 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 ANK2Q01484 3957 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 KMT2AQ03164 3969 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 FRAS1Q86XX4 4008 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 HECTD4Q9Y4D8 3996 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 MT2AP02795 61 aa1.92□□□□□ -2.1
SCN1A-201ENST00000303395 HYDINQ4G0P3 5121 aa1.91□□□□□ -2.1
SCN1A-201ENST00000303395 RYR3Q15413 4870 aa1.91□□□□□ -2.1
SCN1A-201ENST00000303395 LCE3BQ5TA77 95 aa1.91□□□□□ -2.1
SCN1A-201ENST00000303395 VPS13BQ7Z7G8 4022 aa1.91□□□□□ -2.1
SCN1A-201ENST00000303395 PLECQ15149 4684 aaKnown RBP1.91□□□□□ -2.1
SCN1A-201ENST00000303395 SPRR2DP22532 72 aa1.91□□□□□ -2.1
SCN1A-201ENST00000303395 DNAH8Q96JB1 4490 aa1.9□□□□□ -2.1
SCN1A-201ENST00000303395 LCE2BO14633 110 aa1.9□□□□□ -2.11
SCN1A-201ENST00000303395 ABCA13Q86UQ4 5058 aa1.88□□□□□ -2.11
SCN1A-201ENST00000303395 KRTAP19-1Q8IUB9 90 aa1.88□□□□□ -2.11
SCN1A-201ENST00000303395 KRTAP19-5Q3LI72 72 aa1.88□□□□□ -2.11
SCN1A-201ENST00000303395 DNAH5Q8TE73 4624 aa1.88□□□□□ -2.11
SCN1A-201ENST00000303395 DNAH9Q9NYC9 4486 aa1.87□□□□□ -2.11
SCN1A-201ENST00000303395 FLGP20930 4061 aaPredicted RBP1.87□□□□□ -2.11
SCN1A-201ENST00000303395 MT1HP80294 61 aa1.87□□□□□ -2.11
SCN1A-201ENST00000303395 SACSQ9NZJ4 4579 aa1.86□□□□□ -2.11
SCN1A-201ENST00000303395 LCE2DQ5TA82 110 aaPredicted RBP1.86□□□□□ -2.11
SCN1A-201ENST00000303395 MT1GP13640 62 aa1.85□□□□□ -2.11
SCN1A-201ENST00000303395 MT1LQ93083 61 aa1.85□□□□□ -2.11
SCN1A-201ENST00000303395 MT1FP04733 61 aa1.85□□□□□ -2.11
SCN1A-201ENST00000303395 LCE3EQ5T5B0 92 aa1.85□□□□□ -2.11
SCN1A-201ENST00000303395 BIRC6Q9NR09 4857 aa1.84□□□□□ -2.11
SCN1A-201ENST00000303395 APOBP04114 4563 aaKnown RBP1.84□□□□□ -2.12
SCN1A-201ENST00000303395 MT1EP04732 61 aa1.83□□□□□ -2.12
SCN1A-201ENST00000303395 LCE2CQ5TA81 110 aa1.83□□□□□ -2.12
SCN1A-201ENST00000303395 LCE3DQ9BYE3 92 aa1.82□□□□□ -2.12
SCN1A-201ENST00000303395 MT1XP80297 61 aa1.81□□□□□ -2.12
SCN1A-201ENST00000303395 KRTAP2-3P0C7H8 128 aa1.79□□□□□ -2.12
SCN1A-201ENST00000303395 KRTAP2-4Q9BYR9 128 aa1.79□□□□□ -2.12
SCN1A-201ENST00000303395 KRTAP2-1Q9BYU5 128 aa1.79□□□□□ -2.12
SCN1A-201ENST00000303395 PRKDCP78527 4128 aaKnown RBP1.78□□□□□ -2.12
SCN1A-201ENST00000303395 EPPK1P58107 5090 aaKnown RBP1.78□□□□□ -2.12
SCN1A-201ENST00000303395 KRTAP4-5Q9BYR2 181 aa1.78□□□□□ -2.12
SCN1A-201ENST00000303395 KRTAP4-1Q9BYQ7 146 aa1.78□□□□□ -2.13
SCN1A-201ENST00000303395 PKHD1P08F94 4074 aa1.77□□□□□ -2.13
SCN1A-201ENST00000303395 PKD1P98161 4303 aa1.77□□□□□ -2.13
SCN1A-201ENST00000303395 MT1BP07438 61 aa1.76□□□□□ -2.13
SCN1A-201ENST00000303395 STARD9Q9P2P6 4700 aa1.76□□□□□ -2.13
SCN1A-201ENST00000303395 LRP2P98164 4655 aa1.75□□□□□ -2.13
SCN1A-201ENST00000303395 KMT2CQ8NEZ4 4911 aaKnown RBP1.74□□□□□ -2.13
SCN1A-201ENST00000303395 MT1AP04731 61 aa1.74□□□□□ -2.13
SCN1A-201ENST00000303395 KRTAP19-2Q3LHN2 52 aa1.72□□□□□ -2.13
SCN1A-201ENST00000303395 KRTAP9-8Q9BYQ0 159 aa1.71□□□□□ -2.14
SCN1A-201ENST00000303395 FAT3Q8TDW7 4589 aa1.71□□□□□ -2.14
SCN1A-201ENST00000303395 RNF213Q63HN8 5207 aa1.71□□□□□ -2.14
SCN1A-201ENST00000303395 KRTAP9-3Q9BYQ3 159 aa1.7□□□□□ -2.14
SCN1A-201ENST00000303395 FAT1Q14517 4588 aa1.7□□□□□ -2.14
SCN1A-201ENST00000303395 MUC17Q685J3 4493 aa1.69□□□□□ -2.14
SCN1A-201ENST00000303395 KRTAP19-3Q7Z4W3 81 aa1.69□□□□□ -2.14
SCN1A-201ENST00000303395 LCE1BQ5T7P3 118 aa1.68□□□□□ -2.14
SCN1A-201ENST00000303395 MT4P47944 62 aa1.67□□□□□ -2.14
SCN1A-201ENST00000303395 LCE1DQ5T752 114 aa1.67□□□□□ -2.14
SCN1A-201ENST00000303395 MT1MQ8N339 61 aa1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms