RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 ZNF469Q96JG9 3925 aaPredicted RBP4.77□□□□□ -1.65
SHROOM3-201ENST00000296043 CMYA5Q8N3K9 4069 aa4.76□□□□□ -1.65
SHROOM3-201ENST00000296043 KRTAP21-3Q3LHN1 58 aa4.74□□□□□ -1.65
SHROOM3-201ENST00000296043 DNAH2Q9P225 4427 aa4.71□□□□□ -1.66
SHROOM3-201ENST00000296043 DNAH7Q8WXX0 4024 aa4.67□□□□□ -1.66
SHROOM3-201ENST00000296043 MT1HL1P0DM35 61 aa4.67□□□□□ -1.66
SHROOM3-201ENST00000296043 CSMD2Q7Z408 3487 aa4.61□□□□□ -1.67
SHROOM3-201ENST00000296043 KRTAP8-1Q8IUC2 63 aa4.58□□□□□ -1.68
SHROOM3-201ENST00000296043 ANK2Q01484 3957 aa4.55□□□□□ -1.68
SHROOM3-201ENST00000296043 LCE3CQ5T5A8 94 aa4.51□□□□□ -1.69
SHROOM3-201ENST00000296043 KRTAP19-5Q3LI72 72 aa4.5□□□□□ -1.69
SHROOM3-201ENST00000296043 HUWE1Q7Z6Z7 4374 aaKnown RBP4.5□□□□□ -1.69
SHROOM3-201ENST00000296043 DNAH6Q9C0G6 4158 aa4.48□□□□□ -1.69
SHROOM3-201ENST00000296043 KRTAP10-4P60372 401 aaPredicted RBP4.48□□□□□ -1.69
SHROOM3-201ENST00000296043 KMT2AQ03164 3969 aa4.46□□□□□ -1.7
SHROOM3-201ENST00000296043 KRTAP4-5Q9BYR2 181 aa4.42□□□□□ -1.7
SHROOM3-201ENST00000296043 DNAH1Q9P2D7 4330 aa4.41□□□□□ -1.7
SHROOM3-201ENST00000296043 VPS13BQ7Z7G8 4022 aa4.4□□□□□ -1.71
SHROOM3-201ENST00000296043 ANK3Q12955 4377 aaKnown RBP4.37□□□□□ -1.71
SHROOM3-201ENST00000296043 KRTAP12-4P60329 112 aa4.36□□□□□ -1.71
SHROOM3-201ENST00000296043 LCE3BQ5TA77 95 aa4.35□□□□□ -1.71
SHROOM3-201ENST00000296043 KRTAP4-1Q9BYQ7 146 aa4.27□□□□□ -1.73
SHROOM3-201ENST00000296043 DNAH10Q8IVF4 4471 aa4.27□□□□□ -1.73
SHROOM3-201ENST00000296043 KRTAP10-7P60409 375 aaPredicted RBP4.27□□□□□ -1.73
SHROOM3-201ENST00000296043 SPRR2GQ9BYE4 73 aa4.24□□□□□ -1.73
SHROOM3-201ENST00000296043 DNAH11Q96DT5 4516 aa4.22□□□□□ -1.73
SHROOM3-201ENST00000296043 FLGP20930 4061 aaPredicted RBP4.19□□□□□ -1.74
SHROOM3-201ENST00000296043 SPRR2FQ96RM1 72 aa4.18□□□□□ -1.74
SHROOM3-201ENST00000296043 FRAS1Q86XX4 4008 aa4.17□□□□□ -1.74
SHROOM3-201ENST00000296043 MT2AP02795 61 aa4.17□□□□□ -1.74
SHROOM3-201ENST00000296043 DNAH17Q9UFH2 4485 aa4.16□□□□□ -1.74
SHROOM3-201ENST00000296043 SPRR5A0A1B0GTR4 108 aa4.15□□□□□ -1.75
SHROOM3-201ENST00000296043 MT1FP04733 61 aa4.13□□□□□ -1.75
SHROOM3-201ENST00000296043 MT1HP80294 61 aa4.11□□□□□ -1.75
SHROOM3-201ENST00000296043 VPS13DQ5THJ4 4388 aa4.11□□□□□ -1.75
SHROOM3-201ENST00000296043 MT1GP13640 62 aa4.09□□□□□ -1.75
SHROOM3-201ENST00000296043 DNAH8Q96JB1 4490 aa4.06□□□□□ -1.76
SHROOM3-201ENST00000296043 PRKDCP78527 4128 aaKnown RBP4.04□□□□□ -1.76
SHROOM3-201ENST00000296043 LCE3DQ9BYE3 92 aa4□□□□□ -1.77
SHROOM3-201ENST00000296043 KRTAP19-4Q3LI73 84 aa3.96□□□□□ -1.78
SHROOM3-201ENST00000296043 LRP1Q07954 4544 aaKnown RBP3.96□□□□□ -1.78
SHROOM3-201ENST00000296043 LCE3EQ5T5B0 92 aa3.95□□□□□ -1.78
SHROOM3-201ENST00000296043 PRM1P04553 51 aa3.95□□□□□ -1.78
SHROOM3-201ENST00000296043 MT1XP80297 61 aa3.94□□□□□ -1.78
SHROOM3-201ENST00000296043 FAT2Q9NYQ8 4349 aa3.91□□□□□ -1.78
SHROOM3-201ENST00000296043 DYNC2H1Q8NCM8 4307 aaKnown RBP3.88□□□□□ -1.79
SHROOM3-201ENST00000296043 DNAH9Q9NYC9 4486 aa3.85□□□□□ -1.79
SHROOM3-201ENST00000296043 KRTAP19-1Q8IUB9 90 aa3.83□□□□□ -1.8
SHROOM3-201ENST00000296043 PKHD1P08F94 4074 aa3.83□□□□□ -1.8
SHROOM3-201ENST00000296043 SPRR2EP22531 72 aa3.82□□□□□ -1.8
SHROOM3-201ENST00000296043 SPRR2BP35325 72 aa3.82□□□□□ -1.8
SHROOM3-201ENST00000296043 SPRR2AP35326 72 aa3.82□□□□□ -1.8
SHROOM3-201ENST00000296043 DYNC1H1Q14204 4646 aaKnown RBP3.8□□□□□ -1.8
SHROOM3-201ENST00000296043 DNAH5Q8TE73 4624 aa3.79□□□□□ -1.8
SHROOM3-201ENST00000296043 KRTAP19-8Q3LI54 63 aa3.79□□□□□ -1.8
SHROOM3-201ENST00000296043 FAT1Q14517 4588 aa3.77□□□□□ -1.81
SHROOM3-201ENST00000296043 PKHD1L1Q86WI1 4243 aa3.77□□□□□ -1.81
SHROOM3-201ENST00000296043 KRTAP4-7Q9BYR0 210 aa3.77□□□□□ -1.81
SHROOM3-201ENST00000296043 KRTAP4-8A0A0G2JLE6 195 aa3.76□□□□□ -1.81
SHROOM3-201ENST00000296043 KRTAP4-8Q9BYQ9 185 aa3.76□□□□□ -1.81
SHROOM3-201ENST00000296043 STARD9Q9P2P6 4700 aa3.71□□□□□ -1.82
SHROOM3-201ENST00000296043 APOBP04114 4563 aaKnown RBP3.7□□□□□ -1.82
SHROOM3-201ENST00000296043 PKD1P98161 4303 aa3.7□□□□□ -1.82
SHROOM3-201ENST00000296043 PLECQ15149 4684 aaKnown RBP3.69□□□□□ -1.82
SHROOM3-201ENST00000296043 SPRR2DP22532 72 aa3.69□□□□□ -1.82
SHROOM3-201ENST00000296043 LCE2BO14633 110 aa3.68□□□□□ -1.82
SHROOM3-201ENST00000296043 MT1BP07438 61 aa3.67□□□□□ -1.82
SHROOM3-201ENST00000296043 MT1LQ93083 61 aa3.64□□□□□ -1.83
SHROOM3-201ENST00000296043 LOC100996750A0A140TA64 210 aa3.64□□□□□ -1.83
SHROOM3-201ENST00000296043 LRP1BQ9NZR2 4599 aa3.64□□□□□ -1.83
SHROOM3-201ENST00000296043 HSPG2P98160 4391 aa3.64□□□□□ -1.83
SHROOM3-201ENST00000296043 SACSQ9NZJ4 4579 aa3.6□□□□□ -1.83
SHROOM3-201ENST00000296043 TNXBP22105 4242 aa3.59□□□□□ -1.84
SHROOM3-201ENST00000296043 KRTAP4-9Q9BYQ8 210 aa3.55□□□□□ -1.84
SHROOM3-201ENST00000296043 MYCBP2O75592 4640 aa3.54□□□□□ -1.84
SHROOM3-201ENST00000296043 MT3P25713 68 aa3.53□□□□□ -1.84
SHROOM3-201ENST00000296043 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
SHROOM3-201ENST00000296043 MT1EP04732 61 aa3.52□□□□□ -1.85
SHROOM3-201ENST00000296043 LCE1BQ5T7P3 118 aa3.5□□□□□ -1.85
SHROOM3-201ENST00000296043 KRTAP4-3Q9BYR4 195 aa3.48□□□□□ -1.85
SHROOM3-201ENST00000296043 LCE1DQ5T752 114 aa3.47□□□□□ -1.85
SHROOM3-201ENST00000296043 FAT3Q8TDW7 4589 aa3.47□□□□□ -1.85
SHROOM3-201ENST00000296043 KRTAP9-8Q9BYQ0 159 aa3.47□□□□□ -1.85
SHROOM3-201ENST00000296043 LCE2CQ5TA81 110 aa3.45□□□□□ -1.86
SHROOM3-201ENST00000296043 KRTAP2-3P0C7H8 128 aa3.45□□□□□ -1.86
SHROOM3-201ENST00000296043 KRTAP2-4Q9BYR9 128 aa3.45□□□□□ -1.86
SHROOM3-201ENST00000296043 KRTAP2-1Q9BYU5 128 aa3.45□□□□□ -1.86
SHROOM3-201ENST00000296043 MT1MQ8N339 61 aa3.45□□□□□ -1.86
SHROOM3-201ENST00000296043 KRTAP9-3Q9BYQ3 159 aa3.44□□□□□ -1.86
SHROOM3-201ENST00000296043 MT4P47944 62 aa3.41□□□□□ -1.86
SHROOM3-201ENST00000296043 KRTAP17-1Q9BYP8 105 aa3.38□□□□□ -1.87
SHROOM3-201ENST00000296043 MUC17Q685J3 4493 aa3.37□□□□□ -1.87
SHROOM3-201ENST00000296043 LCE2DQ5TA82 110 aaPredicted RBP3.37□□□□□ -1.87
SHROOM3-201ENST00000296043 KRTAP6-2Q3LI66 62 aa3.37□□□□□ -1.87
SHROOM3-201ENST00000296043 RYR1P21817 5038 aa3.32□□□□□ -1.88
SHROOM3-201ENST00000296043 KRTAP9-7A8MTY7 169 aa3.32□□□□□ -1.88
SHROOM3-201ENST00000296043 RYR3Q15413 4870 aa3.28□□□□□ -1.89
SHROOM3-201ENST00000296043 DNHD1Q96M86 4753 aa3.22□□□□□ -1.89
SHROOM3-201ENST00000296043 MT1AP04731 61 aa3.2□□□□□ -1.9
SHROOM3-201ENST00000296043 KRTAP9-2Q9BYQ4 174 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms