RNA–Protein interactions for RNA: ENST00000285199.11

USP43-201, Transcript of ubiquitin specific peptidase 43, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP43, Length 4,169 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-201ENST00000285199 DNAH5Q8TE73 4624 aa7.57□□□□□ -1.2
USP43-201ENST00000285199 STARD9Q9P2P6 4700 aa7.56□□□□□ -1.2
USP43-201ENST00000285199 MYCBP2O75592 4640 aa7.55□□□□□ -1.2
USP43-201ENST00000285199 FRAS1Q86XX4 4008 aa7.54□□□□□ -1.2
USP43-201ENST00000285199 KMT2AQ03164 3969 aa7.53□□□□□ -1.2
USP43-201ENST00000285199 KRTAP15-1Q3LI76 137 aa7.5□□□□□ -1.21
USP43-201ENST00000285199 PP632Q6XCG6 107 aa7.49□□□□□ -1.21
USP43-201ENST00000285199 DNAH17Q9UFH2 4485 aa7.43□□□□□ -1.22
USP43-201ENST00000285199 PRKDCP78527 4128 aaKnown RBP7.42□□□□□ -1.22
USP43-201ENST00000285199 DNAH2Q9P225 4427 aa7.42□□□□□ -1.22
USP43-201ENST00000285199 VPS13DQ5THJ4 4388 aa7.36□□□□□ -1.23
USP43-201ENST00000285199 KRTAP10-4P60372 401 aaPredicted RBP7.36□□□□□ -1.23
USP43-201ENST00000285199 DNAH7Q8WXX0 4024 aa7.35□□□□□ -1.23
USP43-201ENST00000285199 DNAH6Q9C0G6 4158 aa7.28□□□□□ -1.24
USP43-201ENST00000285199 CMYA5Q8N3K9 4069 aa7.27□□□□□ -1.25
USP43-201ENST00000285199 VPS13BQ7Z7G8 4022 aa7.26□□□□□ -1.25
USP43-201ENST00000285199 LORP23490 312 aaPredicted RBP7.25□□□□□ -1.25
USP43-201ENST00000285199 MT1HL1P0DM35 61 aa7.24□□□□□ -1.25
USP43-201ENST00000285199 KRTAP10-10P60014 251 aa7.24□□□□□ -1.25
USP43-201ENST00000285199 FAT3Q8TDW7 4589 aa7.23□□□□□ -1.25
USP43-201ENST00000285199 DYNC1H1Q14204 4646 aaKnown RBP7.22□□□□□ -1.25
USP43-201ENST00000285199 ALMS1Q8TCU4 4167 aa7.21□□□□□ -1.25
USP43-201ENST00000285199 APOBP04114 4563 aaKnown RBP7.17□□□□□ -1.26
USP43-201ENST00000285199 LRP1Q07954 4544 aaKnown RBP7.13□□□□□ -1.27
USP43-201ENST00000285199 DNAH3Q8TD57 4116 aa7.13□□□□□ -1.27
USP43-201ENST00000285199 KRTAP4-5Q9BYR2 181 aa7.1□□□□□ -1.27
USP43-201ENST00000285199 HECTD4Q9Y4D8 3996 aa7.1□□□□□ -1.27
USP43-201ENST00000285199 RYR1P21817 5038 aa7.09□□□□□ -1.27
USP43-201ENST00000285199 SACSQ9NZJ4 4579 aa7.08□□□□□ -1.28
USP43-201ENST00000285199 KIAA1109Q2LD37 5005 aa7.01□□□□□ -1.29
USP43-201ENST00000285199 DYNC2H1Q8NCM8 4307 aaKnown RBP6.96□□□□□ -1.3
USP43-201ENST00000285199 PKHD1P08F94 4074 aa6.93□□□□□ -1.3
USP43-201ENST00000285199 HYDINQ4G0P3 5121 aa6.92□□□□□ -1.3
USP43-201ENST00000285199 LRP2P98164 4655 aa6.87□□□□□ -1.31
USP43-201ENST00000285199 RYR3Q15413 4870 aa6.82□□□□□ -1.32
USP43-201ENST00000285199 KRTAP4-1Q9BYQ7 146 aa6.81□□□□□ -1.32
USP43-201ENST00000285199 FAT2Q9NYQ8 4349 aa6.8□□□□□ -1.32
USP43-201ENST00000285199 KMT2CQ8NEZ4 4911 aaKnown RBP6.7□□□□□ -1.34
USP43-201ENST00000285199 LCE3AQ5TA76 89 aa6.7□□□□□ -1.34
USP43-201ENST00000285199 KRTAP17-1Q9BYP8 105 aa6.67□□□□□ -1.34
USP43-201ENST00000285199 PRO2289Q9P1D8 64 aa6.67□□□□□ -1.34
USP43-201ENST00000285199 HSPG2P98160 4391 aa6.61□□□□□ -1.35
USP43-201ENST00000285199 RYR2Q92736 4967 aa6.58□□□□□ -1.36
USP43-201ENST00000285199 LPAP08519 4548 aa6.53□□□□□ -1.36
USP43-201ENST00000285199 KRTAP10-12P60413 245 aa6.53□□□□□ -1.36
USP43-201ENST00000285199 KRTAP12-3P60328 96 aa6.52□□□□□ -1.37
USP43-201ENST00000285199 PKD1P98161 4303 aa6.47□□□□□ -1.37
USP43-201ENST00000285199 HERC2O95714 4834 aa6.45□□□□□ -1.38
USP43-201ENST00000285199 INE1O15225 51 aa6.4□□□□□ -1.39
USP43-201ENST00000285199 KRTAP23-1A1A580 65 aa6.34□□□□□ -1.39
USP43-201ENST00000285199 EPPK1P58107 5090 aaKnown RBP6.33□□□□□ -1.4
USP43-201ENST00000285199 CRCT1Q9UGL9 99 aa6.33□□□□□ -1.4
USP43-201ENST00000285199 MUC2Q02817 5179 aa6.24□□□□□ -1.41
USP43-201ENST00000285199 PKHD1L1Q86WI1 4243 aa6.2□□□□□ -1.42
USP43-201ENST00000285199 MT1FP04733 61 aa6.17□□□□□ -1.42
USP43-201ENST00000285199 MT2AP02795 61 aa6.17□□□□□ -1.42
USP43-201ENST00000285199 SPRR2GQ9BYE4 73 aa6.16□□□□□ -1.42
USP43-201ENST00000285199 MT1HP80294 61 aa6.14□□□□□ -1.43
USP43-201ENST00000285199 BIRC6Q9NR09 4857 aa6.13□□□□□ -1.43
USP43-201ENST00000285199 ABCA13Q86UQ4 5058 aa6.12□□□□□ -1.43
USP43-201ENST00000285199 KRTAP19-1Q8IUB9 90 aa6.12□□□□□ -1.43
USP43-201ENST00000285199 PCLOQ9Y6V0 5065 aa6.1□□□□□ -1.43
USP43-201ENST00000285199 TNXBP22105 4242 aa6.1□□□□□ -1.43
USP43-201ENST00000285199 FAT4Q6V0I7 4981 aa6.03□□□□□ -1.44
USP43-201ENST00000285199 KRTAP8-1Q8IUC2 63 aa6.03□□□□□ -1.44
USP43-201ENST00000285199 RNF213Q63HN8 5207 aa5.99□□□□□ -1.45
USP43-201ENST00000285199 KRTAP10-7P60409 375 aaPredicted RBP5.98□□□□□ -1.45
USP43-201ENST00000285199 UBR4Q5T4S7 5183 aa5.97□□□□□ -1.45
USP43-201ENST00000285199 KRTAP19-5Q3LI72 72 aa5.97□□□□□ -1.45
USP43-201ENST00000285199 HERC1Q15751 4861 aa5.96□□□□□ -1.46
USP43-201ENST00000285199 OBSCNQ5VST9 7968 aa5.93□□□□□ -1.46
USP43-201ENST00000285199 SPRR5A0A1B0GTR4 108 aa5.93□□□□□ -1.46
USP43-201ENST00000285199 KRTAP10-5P60370 271 aa5.93□□□□□ -1.46
USP43-201ENST00000285199 MUC17Q685J3 4493 aa5.92□□□□□ -1.46
USP43-201ENST00000285199 FSIP2Q5CZC0 6907 aa5.9□□□□□ -1.47
USP43-201ENST00000285199 SYNE1Q8NF91 8797 aaKnown RBP5.85□□□□□ -1.47
USP43-201ENST00000285199 KRTAP19-2Q3LHN2 52 aa5.84□□□□□ -1.47
USP43-201ENST00000285199 MT1XP80297 61 aa5.83□□□□□ -1.48
USP43-201ENST00000285199 LCE3CQ5T5A8 94 aa5.82□□□□□ -1.48
USP43-201ENST00000285199 LCE2CQ5TA81 110 aa5.8□□□□□ -1.48
USP43-201ENST00000285199 MT1BP07438 61 aa5.77□□□□□ -1.49
USP43-201ENST00000285199 FLGP20930 4061 aaPredicted RBP5.76□□□□□ -1.49
USP43-201ENST00000285199 KRTAP4-8A0A0G2JLE6 195 aa5.76□□□□□ -1.49
USP43-201ENST00000285199 KRTAP4-8Q9BYQ9 185 aa5.76□□□□□ -1.49
USP43-201ENST00000285199 KRTAP9-8Q9BYQ0 159 aa5.73□□□□□ -1.49
USP43-201ENST00000285199 HMCN2Q8NDA2 5059 aa5.71□□□□□ -1.5
USP43-201ENST00000285199 KRTAP19-8Q3LI54 63 aa5.7□□□□□ -1.5
USP43-201ENST00000285199 KRTAP4-7Q9BYR0 210 aa5.65□□□□□ -1.51
USP43-201ENST00000285199 KRTAP9-3Q9BYQ3 159 aa5.48□□□□□ -1.53
USP43-201ENST00000285199 DSTQ03001 7570 aaKnown RBP5.47□□□□□ -1.53
USP43-201ENST00000285199 USH2AO75445 5202 aa5.45□□□□□ -1.54
USP43-201ENST00000285199 FCGBPQ9Y6R7 5405 aaPredicted RBP5.45□□□□□ -1.54
USP43-201ENST00000285199 KMT2DO14686 5537 aa5.45□□□□□ -1.54
USP43-201ENST00000285199 MT1GP13640 62 aa5.42□□□□□ -1.54
USP43-201ENST00000285199 KRTAP12-4P60329 112 aa5.41□□□□□ -1.54
USP43-201ENST00000285199 LCE2BO14633 110 aa5.37□□□□□ -1.55
USP43-201ENST00000285199 LCE3BQ5TA77 95 aa5.34□□□□□ -1.55
USP43-201ENST00000285199 SPRR2FQ96RM1 72 aa5.34□□□□□ -1.55
USP43-201ENST00000285199 LOC100996750A0A140TA64 210 aa5.23□□□□□ -1.57
USP43-201ENST00000285199 KRTAP4-3Q9BYR4 195 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms