RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 RELNP78509 3460 aa3.32□□□□□ -1.88
NIPBL-201ENST00000282516 SPRR2GQ9BYE4 73 aa3.31□□□□□ -1.88
NIPBL-201ENST00000282516 ZNF469Q96JG9 3925 aaPredicted RBP3.26□□□□□ -1.89
NIPBL-201ENST00000282516 MT1HP80294 61 aa3.25□□□□□ -1.89
NIPBL-201ENST00000282516 LAMA5O15230 3695 aa3.25□□□□□ -1.89
NIPBL-201ENST00000282516 ASPMQ8IZT6 3477 aa3.24□□□□□ -1.89
NIPBL-201ENST00000282516 MT2AP02795 61 aa3.24□□□□□ -1.89
NIPBL-201ENST00000282516 CUBNO60494 3623 aa3.23□□□□□ -1.89
NIPBL-201ENST00000282516 DNAH3Q8TD57 4116 aa3.23□□□□□ -1.89
NIPBL-201ENST00000282516 DNAH7Q8WXX0 4024 aa3.21□□□□□ -1.9
NIPBL-201ENST00000282516 CSMD3Q7Z407 3707 aa3.21□□□□□ -1.9
NIPBL-201ENST00000282516 LYSTQ99698 3801 aa3.2□□□□□ -1.9
NIPBL-201ENST00000282516 LCE3BQ5TA77 95 aa3.2□□□□□ -1.9
NIPBL-201ENST00000282516 DNAH1Q9P2D7 4330 aa3.19□□□□□ -1.9
NIPBL-201ENST00000282516 SPRR2EP22531 72 aa3.15□□□□□ -1.91
NIPBL-201ENST00000282516 SPRR2BP35325 72 aa3.15□□□□□ -1.91
NIPBL-201ENST00000282516 SPRR2AP35326 72 aa3.15□□□□□ -1.91
NIPBL-201ENST00000282516 CSMD1Q96PZ7 3565 aa3.15□□□□□ -1.91
NIPBL-201ENST00000282516 KRTAP12-4P60329 112 aa3.14□□□□□ -1.91
NIPBL-201ENST00000282516 MT1FP04733 61 aa3.14□□□□□ -1.91
NIPBL-201ENST00000282516 KRTAP4-1Q9BYQ7 146 aa3.13□□□□□ -1.91
NIPBL-201ENST00000282516 MUC3AQ02505 3323 aa3.12□□□□□ -1.91
NIPBL-201ENST00000282516 CMYA5Q8N3K9 4069 aa3.11□□□□□ -1.91
NIPBL-201ENST00000282516 ANK2Q01484 3957 aa3.1□□□□□ -1.91
NIPBL-201ENST00000282516 SPRR2DP22532 72 aa3.08□□□□□ -1.92
NIPBL-201ENST00000282516 HECTD4Q9Y4D8 3996 aa3.08□□□□□ -1.92
NIPBL-201ENST00000282516 LCE2BO14633 110 aa3.06□□□□□ -1.92
NIPBL-201ENST00000282516 DNAH2Q9P225 4427 aa3.05□□□□□ -1.92
NIPBL-201ENST00000282516 LCE3DQ9BYE3 92 aa3.03□□□□□ -1.92
NIPBL-201ENST00000282516 MT1GP13640 62 aa3.01□□□□□ -1.93
NIPBL-201ENST00000282516 VPS13BQ7Z7G8 4022 aa3□□□□□ -1.93
NIPBL-201ENST00000282516 CSMD2Q7Z408 3487 aa2.99□□□□□ -1.93
NIPBL-201ENST00000282516 LCE3EQ5T5B0 92 aa2.99□□□□□ -1.93
NIPBL-201ENST00000282516 DNAH6Q9C0G6 4158 aa2.98□□□□□ -1.93
NIPBL-201ENST00000282516 KRTAP19-8Q3LI54 63 aa2.97□□□□□ -1.93
NIPBL-201ENST00000282516 SVEP1Q4LDE5 3571 aa2.95□□□□□ -1.94
NIPBL-201ENST00000282516 MT1XP80297 61 aa2.93□□□□□ -1.94
NIPBL-201ENST00000282516 DNAH10Q8IVF4 4471 aa2.91□□□□□ -1.94
NIPBL-201ENST00000282516 ANK3Q12955 4377 aaKnown RBP2.91□□□□□ -1.94
NIPBL-201ENST00000282516 LRP1Q07954 4544 aaKnown RBP2.9□□□□□ -1.94
NIPBL-201ENST00000282516 KMT2AQ03164 3969 aa2.9□□□□□ -1.95
NIPBL-201ENST00000282516 SPRR5A0A1B0GTR4 108 aa2.89□□□□□ -1.95
NIPBL-201ENST00000282516 FRAS1Q86XX4 4008 aa2.88□□□□□ -1.95
NIPBL-201ENST00000282516 LCE2CQ5TA81 110 aa2.88□□□□□ -1.95
NIPBL-201ENST00000282516 DNAH11Q96DT5 4516 aa2.87□□□□□ -1.95
NIPBL-201ENST00000282516 KRTAP19-1Q8IUB9 90 aa2.86□□□□□ -1.95
NIPBL-201ENST00000282516 FLGP20930 4061 aaPredicted RBP2.85□□□□□ -1.95
NIPBL-201ENST00000282516 MT3P25713 68 aa2.84□□□□□ -1.96
NIPBL-201ENST00000282516 LCE2DQ5TA82 110 aaPredicted RBP2.8□□□□□ -1.96
NIPBL-201ENST00000282516 KRTAP19-3Q7Z4W3 81 aa2.8□□□□□ -1.96
NIPBL-201ENST00000282516 MT1LQ93083 61 aa2.77□□□□□ -1.97
NIPBL-201ENST00000282516 PRM1P04553 51 aa2.77□□□□□ -1.97
NIPBL-201ENST00000282516 MT1BP07438 61 aa2.76□□□□□ -1.97
NIPBL-201ENST00000282516 DNAH17Q9UFH2 4485 aa2.76□□□□□ -1.97
NIPBL-201ENST00000282516 FAT2Q9NYQ8 4349 aa2.74□□□□□ -1.97
NIPBL-201ENST00000282516 PRKDCP78527 4128 aaKnown RBP2.73□□□□□ -1.97
NIPBL-201ENST00000282516 KRTAP4-8A0A0G2JLE6 195 aa2.71□□□□□ -1.97
NIPBL-201ENST00000282516 KRTAP4-8Q9BYQ9 185 aa2.71□□□□□ -1.97
NIPBL-201ENST00000282516 MT4P47944 62 aa2.7□□□□□ -1.98
NIPBL-201ENST00000282516 DNAH5Q8TE73 4624 aa2.69□□□□□ -1.98
NIPBL-201ENST00000282516 LCE1DQ5T752 114 aa2.69□□□□□ -1.98
NIPBL-201ENST00000282516 LCE1BQ5T7P3 118 aa2.68□□□□□ -1.98
NIPBL-201ENST00000282516 MT1EP04732 61 aa2.68□□□□□ -1.98
NIPBL-201ENST00000282516 KRTAP9-3Q9BYQ3 159 aa2.68□□□□□ -1.98
NIPBL-201ENST00000282516 KRTAP9-8Q9BYQ0 159 aa2.67□□□□□ -1.98
NIPBL-201ENST00000282516 PKHD1P08F94 4074 aa2.65□□□□□ -1.98
NIPBL-201ENST00000282516 DYNC2H1Q8NCM8 4307 aaKnown RBP2.65□□□□□ -1.99
NIPBL-201ENST00000282516 MT1MQ8N339 61 aa2.65□□□□□ -1.99
NIPBL-201ENST00000282516 DYNC1H1Q14204 4646 aaKnown RBP2.64□□□□□ -1.99
NIPBL-201ENST00000282516 VPS13DQ5THJ4 4388 aa2.63□□□□□ -1.99
NIPBL-201ENST00000282516 DNAH8Q96JB1 4490 aa2.61□□□□□ -1.99
NIPBL-201ENST00000282516 PKHD1L1Q86WI1 4243 aa2.61□□□□□ -1.99
NIPBL-201ENST00000282516 PLECQ15149 4684 aaKnown RBP2.6□□□□□ -1.99
NIPBL-201ENST00000282516 HSPG2P98160 4391 aa2.6□□□□□ -1.99
NIPBL-201ENST00000282516 KRTAP4-7Q9BYR0 210 aa2.59□□□□□ -2
NIPBL-201ENST00000282516 DNAH9Q9NYC9 4486 aa2.58□□□□□ -2
NIPBL-201ENST00000282516 FAT3Q8TDW7 4589 aa2.55□□□□□ -2
NIPBL-201ENST00000282516 PKD1P98161 4303 aa2.55□□□□□ -2
NIPBL-201ENST00000282516 APOBP04114 4563 aaKnown RBP2.52□□□□□ -2.01
NIPBL-201ENST00000282516 LCE5AQ5TCM9 118 aa2.51□□□□□ -2.01
NIPBL-201ENST00000282516 LOC100996750A0A140TA64 210 aa2.51□□□□□ -2.01
NIPBL-201ENST00000282516 MT1AP04731 61 aa2.51□□□□□ -2.01
NIPBL-201ENST00000282516 STARD9Q9P2P6 4700 aa2.5□□□□□ -2.01
NIPBL-201ENST00000282516 MYCBP2O75592 4640 aa2.49□□□□□ -2.01
NIPBL-201ENST00000282516 FAT1Q14517 4588 aa2.48□□□□□ -2.01
NIPBL-201ENST00000282516 SACSQ9NZJ4 4579 aa2.48□□□□□ -2.01
NIPBL-201ENST00000282516 KRTAP2-3P0C7H8 128 aa2.47□□□□□ -2.01
NIPBL-201ENST00000282516 KRTAP2-4Q9BYR9 128 aa2.47□□□□□ -2.01
NIPBL-201ENST00000282516 KRTAP2-1Q9BYU5 128 aa2.47□□□□□ -2.01
NIPBL-201ENST00000282516 RYR1P21817 5038 aa2.47□□□□□ -2.01
NIPBL-201ENST00000282516 PCLOQ9Y6V0 5065 aa2.47□□□□□ -2.01
NIPBL-201ENST00000282516 KRTAP19-6Q3LI70 58 aa2.44□□□□□ -2.02
NIPBL-201ENST00000282516 RYR3Q15413 4870 aa2.43□□□□□ -2.02
NIPBL-201ENST00000282516 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
NIPBL-201ENST00000282516 LCE1EQ5T753 118 aa2.41□□□□□ -2.02
NIPBL-201ENST00000282516 LCE1FQ5T754 118 aa2.41□□□□□ -2.02
NIPBL-201ENST00000282516 LCE1AQ5T7P2 110 aa2.41□□□□□ -2.02
NIPBL-201ENST00000282516 KRTAP4-3Q9BYR4 195 aa2.41□□□□□ -2.02
NIPBL-201ENST00000282516 KRTAP20-1Q3LI63 56 aa2.4□□□□□ -2.03
NIPBL-201ENST00000282516 LRP1BQ9NZR2 4599 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms